version 1.0
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167 3265 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2184 54.02 0 2661930..2662601 + 223 158522201 - Dole_2190 - TetR family transcriptional regulator 2185 58.91 0 2662702..2665665 + 987 158522202 - Dole_2191 - formate C-acetyltransferase 2186 54.87 0 2665849..2666772 + 307 158522203 - Dole_2192 - glycyl-radical activating family protein 2187 60.93 0 2666832..2667842 + 336 158522204 - Dole_2193 - NAD-dependent epimerase/dehydratase 2188 59.55 0 2668160..2669002 + 280 158522205 - Dole_2194 - short-chain dehydrogenase/reductase SDR 2189 60.04 0 2669013..2670023 - 336 158522206 - Dole_2195 - glyceraldehyde 3-phosphate dehydrogenase 2190 55.24 0 2670203..2670736 + 177 158522207 - Dole_2196 - hypothetical protein 2191 60.96 0 2670739..2671632 - 297 158522208 - Dole_2197 - methionine aminopeptidase, type I 2192 57.28 0 2671820..2672224 + 134 158522209 - Dole_2198 - GTP cyclohydrolase I 2193 56.15 0 2672264..2673337 + 357 158522210 - Dole_2199 - cyclic nucleotide-binding protein 2194 54.21 0 2673410..2673730 - 106 158522211 - Dole_2200 - hypothetical protein 2195 64.24 +1 2673793..2674122 - 109 158522212 - Dole_2201 - hypothetical protein 2196 57.23 0 2674115..2675968 - 617 158522213 - Dole_2202 - hypothetical protein 2197 60.29 0 2676007..2676822 - 271 158522214 - Dole_2203 - hypothetical protein 2198 55.46 0 2676843..2678243 - 466 158522215 - Dole_2204 - hypothetical protein 2199 60.08 0 2678231..2679262 - 343 158522216 - Dole_2205 - Holliday junction DNA helicase B 2200 61.00 0 2679259..2679876 - 205 158522217 - Dole_2206 - DNA recombination protein RuvA 2201 55.35 0 2679860..2680345 - 161 158522218 - Dole_2207 - crossover junction endodeoxyribonuclease 2202 57.85 0 2680397..2681224 - 275 158522219 - Dole_2208 - Tol-Pal system YbgF 2203 57.33 0 2681374..2681919 - 181 158522220 - Dole_2209 - peptidoglycan-associated lipoprotein 2204 59.61 0 2681946..2683262 - 438 158522221 - Dole_2210 - beta-propeller repeat-containing to-pal system protein TolB 2205 61.09 0 2683291..2684115 - 274 158522222 - Dole_2211 - TonB family protein 2206 58.39 0 2684159..2684581 - 140 158522223 - Dole_2212 - biopolymer transport TolR 2207 57.95 0 2684578..2685300 - 240 158522224 - Dole_2213 - Tol-Pal system TolQ 2208 55.99 0 2685615..2687543 - 642 158522225 - Dole_2214 - heat shock protein 90 2209 62.70 +1 2687919..2689103 - 394 158522226 - Dole_2215 - hypothetical protein 2210 60.96 0 2689113..2690252 - 379 158522227 - Dole_2216 - peptidase T-like protein 2211 55.70 0 2690624..2691298 + 224 158522228 - Dole_2217 - phosphatidylserine decarboxylase 2212 58.57 0 2691295..2692134 + 279 158522229 - Dole_2218 - CDP-diacylglycerol--serine O-phosphatidyltransferase 2213 59.46 0 2692232..2693299 + 355 158522230 - Dole_2219 - 3-isopropylmalate dehydrogenase 2214 57.67 0 2693320..2694342 + 340 158522231 - Dole_2220 - aspartate-semialdehyde dehydrogenase 2215 58.38 0 2694378..2694872 + 164 158522232 - Dole_2221 - transcription elongation factor GreA 2216 60.66 0 2694905..2695270 + 121 158522233 - Dole_2222 - DNA-directed RNA polymerase, omega subunit 2217 57.61 0 2695227..2696021 + 264 158522234 - Dole_2223 - PP-loop domain-containing protein 2218 55.04 0 2696128..2696910 + 260 158522235 - Dole_2224 - hypothetical protein 2219 59.25 0 2696900..2698207 - 435 158522236 - Dole_2225 - peptidase S13 D-Ala-D-Ala carboxypeptidase C 2220 61.34 0 2698194..2699621 - 475 158522237 - Dole_2226 - putative aminopeptidase 1 2221 60.09 0 2699805..2700245 - 146 158522238 - Dole_2227 - D-tyrosyl-tRNA(Tyr) deacylase 2222 59.56 0 2700331..2700780 - 149 158522239 - Dole_2228 - 3-dehydroquinate dehydratase, type II 2223 62.42 +1 2700789..2701448 - 219 158522240 - Dole_2229 - ribulose-phosphate 3-epimerase 2224 59.77 0 2701491..2702462 - 323 158522241 - Dole_2230 - PASTA domain-containing protein 2225 62.33 0 2702455..2703861 - 468 158522242 - Dole_2231 - sun protein 2226 63.80 +1 2703854..2704795 - 313 158522243 - Dole_2232 - methionyl-tRNA formyltransferase 2227 59.58 0 2704780..2705301 - 173 158522244 - Dole_2233 - peptide deformylase 2228 58.60 0 2705345..2706298 - 317 158522245 - Dole_2234 - riboflavin biosynthesis protein RibF 2229 53.78 0 2706627..2706983 - 118 158522246 - Dole_2235 - response regulator receiver protein 2230 58.85 0 2707311..2708897 + 528 158522247 - Dole_2236 - N-6 DNA methylase 2231 50.20 -1 2708897..2710135 + 412 158522248 - Dole_2237 - restriction modification system DNA specificity subunit 2232 53.52 0 2710132..2712246 + 704 158522249 - Dole_2238 - hypothetical protein 2233 57.50 0 2712243..2715383 + 1046 158522250 - Dole_2239 - HsdR family type I site-specific deoxyribonuclease 2234 48.95 -1 2715473..2715997 + 174 158522251 - Dole_2240 - hypothetical protein 2235 43.15 -2 2716097..2716432 + 111 158522252 - Dole_2241 - addiction module killer protein 2236 38.33 -2 2716429..2716728 + 99 158522253 - Dole_2242 - putative transcriptional regulator 2237 61.24 0 2716853..2717995 + 380 158522254 - Dole_2243 - aminotransferase class V 2238 46.53 -1 2718022..2718468 + 148 158522255 - Dole_2244 - hypothetical protein 2239 55.13 0 2718534..2719799 + 421 158522256 - Dole_2245 - CDP-alcohol phosphatidyltransferase 2240 49.32 -1 2720233..2722527 + 764 158522257 - Dole_2246 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 2241 59.19 0 2722631..2723914 - 427 158522258 - Dole_2247 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2242 64.36 +1 2724195..2725019 + 274 158522259 - Dole_2248 - enoyl-CoA hydratase/isomerase 2243 57.94 0 2725054..2726142 + 362 158522260 - Dole_2249 - hypothetical protein 2244 60.05 0 2726733..2728349 + 538 158522261 - Dole_2250 - cytochrome c class III 2245 62.24 0 2728370..2729431 + 353 158522262 - Dole_2251 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2246 60.38 0 2729431..2730639 + 402 158522263 - Dole_2252 - polysulphide reductase NrfD 2247 49.63 -1 2730684..2730818 + 44 158522264 - Dole_2253 - hypothetical protein 2248 57.08 0 2730882..2731559 + 225 158522265 - Dole_2254 - hmc operon protein 5 2249 60.09 0 2731615..2732997 + 460 158522266 - Dole_2255 - hypothetical protein 2250 59.55 0 2733076..2734002 + 308 158522267 - Dole_2256 - UspA domain-containing protein 2251 53.72 0 2734034..2734396 + 120 158522268 - Dole_2257 - response regulator receiver protein 2252 61.50 0 2734386..2735972 + 528 158522269 - Dole_2258 - multi-sensor signal transduction histidine kinase 2253 60.00 0 2736331..2736795 + 154 158522270 - Dole_2259 - BadM/Rrf2 family transcriptional regulator 2254 58.30 0 2736850..2737554 + 234 158522271 - Dole_2260 - beta-lactamase domain-containing protein 2255 58.45 0 2737665..2738504 + 279 158522272 - Dole_2261 - rhodanese domain-containing protein 2256 61.10 0 2738505..2739617 + 370 158522273 - Dole_2262 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2257 57.30 0 2739619..2739981 + 120 158522274 - Dole_2263 - hypothetical protein 2258 58.79 0 2740103..2740813 + 236 158522275 - Dole_2264 - putative GAF sensor protein 2259 58.68 0 2740978..2742279 - 433 158522276 - Dole_2265 - XRE family transcriptional regulator 2260 60.39 0 2742607..2744262 + 551 158522277 - Dole_2266 - ferredoxin-dependent glutamate synthase 2261 32.88 -2 2744658..2745095 + 145 158522278 - Dole_2267 - hypothetical protein 2262 35.02 -2 2745129..2745722 + 197 158522279 - Dole_2268 - hypothetical protein 2263 57.47 0 2746162..2747499 + 445 158522280 - Dole_2269 - sodium:neurotransmitter symporter 2264 48.00 -1 2747763..2747987 + 74 158522281 - Dole_2270 - hypothetical protein 2265 50.52 -1 2747984..2748274 + 96 158522282 - Dole_2271 - hypothetical protein 2266 53.82 0 2748401..2750572 - 723 158522283 - Dole_2272 - glutamine synthetase catalytic region 2267 56.91 0 2751034..2752365 + 443 158522284 - Dole_2273 - glutamine synthetase, type I 2268 57.56 0 2752960..2754090 + 376 158522285 - Dole_2274 - glutamate synthase (NADPH) 2269 61.90 0 2754054..2755688 + 544 158522286 - Dole_2275 - ferredoxin-dependent glutamate synthase 2270 63.71 +1 2755763..2758093 + 776 158522287 - Dole_2276 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2271 47.67 -1 2758339..2758896 + 185 158522288 - Dole_2277 - hypothetical protein 2272 58.77 0 2759173..2761680 - 835 158522289 - Dole_2278 - transport protein, putative 2273 52.12 0 2761680..2762291 - 203 158522290 - Dole_2279 - toluene tolerance family protein 2274 56.65 0 2762295..2763242 - 315 158522291 - Dole_2280 - VacJ family lipoprotein 2275 59.23 0 2763515..2763958 + 147 158522292 - Dole_2281 - hypothetical protein 2276 59.68 0 2763985..2765115 + 376 158522293 - Dole_2282 - sodium ion-translocating decarboxylase, beta subunit 2277 53.76 0 2765269..2765826 + 185 158522294 - Dole_2283 - hypothetical protein 2278 58.91 0 2765871..2767160 + 429 158522295 - Dole_2284 - fructose/tagatose bisphosphate aldolase-like protein 2279 57.17 0 2767320..2767856 + 178 158522296 - Dole_2285 - NUDIX hydrolase 2280 61.91 0 2768045..2772799 - 1584 158522297 - Dole_2286 - YadA domain-containing protein 2281 54.69 0 2772844..2773419 - 191 158522298 - Dole_2287 - hypothetical protein 2282 62.16 0 2773717..2774871 - 384 158522299 - Dole_2288 - iron-containing alcohol dehydrogenase 2283 58.92 0 2774901..2776760 - 619 158522300 - Dole_2289 - aldehyde ferredoxin oxidoreductase 56.47 MEAN 5.93 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0