IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2141	 65.07	+1	2605570..2606256	-	228	158522158	-	Dole_2147	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2142	 53.78	0	2606328..2607638	-	436	158522159	-	Dole_2148	-	hypothetical protein
2143	 55.74	0	2608097..2608828	-	243	158522160	-	Dole_2149	-	hypothetical protein
2144	 62.92	+1	2608856..2609977	-	373	158522161	-	Dole_2150	-	hypothetical protein
2145	 57.33	0	2610400..2612616	-	738	158522162	-	Dole_2151	-	RpoD family RNA polymerase sigma factor
2146	 58.06	0	2612648..2613007	-	119	158522163	-	Dole_2152	-	putative histone H1-like protein
2147	 57.27	0	2613004..2614845	-	613	158522164	-	Dole_2153	-	DNA primase
2148	 61.90	0	2614848..2615603	-	251	158522165	-	Dole_2154	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
2149	 55.10	0	2615621..2616208	-	195	158522166	-	Dole_2155	-	imidazoleglycerol-phosphate dehydratase
2150	 45.05	-1	2616406..2616678	-	90	158522167	-	Dole_2156	-	hypothetical protein
2151	 58.45	0	2616755..2617873	+	372	158522168	-	Dole_2157	-	diguanylate cyclase
2152	 62.65	+1	2617892..2618788	-	298	158522169	-	Dole_2158	-	LysR family transcriptional regulator
2153	 58.42	0	2618915..2619508	+	197	158522170	-	Dole_2159	-	SirA family protein
2154	 61.32	0	2619688..2620941	+	417	158522171	-	Dole_2160	-	acetyl-CoA acetyltransferase
2155	 54.90	0	2621259..2621513	+	84	158522172	-	Dole_2161	-	peroxiredoxin-like protein
2156	 57.89	0	2621583..2621981	+	132	158522173	-	Dole_2162	-	alkyl hydroperoxide reductase
2157	 53.48	0	2622124..2622669	+	181	158522174	-	Dole_2163	-	putative membrane protein with signal peptide
2158	 57.92	0	2622866..2624683	-	605	158522175	-	Dole_2164	-	acyl-CoA dehydrogenase domain-containing protein
2159	 56.39	0	2625048..2626049	+	333	158522176	-	Dole_2165	-	diguanylate cyclase
2160	 58.37	0	2626080..2626742	+	220	158522177	-	Dole_2166	-	DNA-(apurinic or apyrimidinic site) lyase
2161	 58.84	0	2626757..2628085	+	442	158522178	-	Dole_2167	-	UDP-glucose/GDP-mannose dehydrogenase
2162	 59.11	0	2628146..2628820	+	224	158522179	-	Dole_2168	-	nitroreductase
2163	 59.01	0	2628828..2629598	+	256	158522180	-	Dole_2169	-	hypothetical protein
2164	 59.45	0	2629705..2630577	+	290	158522181	-	Dole_2170	-	hypothetical protein
2165	 51.12	0	2630753..2636392	-	1879	158522182	-	Dole_2171	-	hypothetical protein
2166	 44.23	-2	2637053..2638006	-	317	158522183	-	Dole_2172	-	hypothetical protein
2167	 53.58	0	2638218..2639027	-	269	158522184	-	Dole_2173	-	LuxR family transcriptional regulator
2168	 57.68	0	2639570..2640994	+	474	158522185	-	Dole_2174	-	response regulator receiver modulated metal dependent phosphohydrolase
2169	 58.75	0	2641546..2642202	-	218	158522186	-	Dole_2175	-	TetR family transcriptional regulator
2170	 62.14	0	2642259..2644049	-	596	158522187	-	Dole_2176	-	hypothetical protein
2171	 59.90	0	2644053..2644820	-	255	158522188	-	Dole_2177	-	enoyl-CoA hydratase/isomerase
2172	 60.38	0	2644836..2645360	-	174	158522189	-	Dole_2178	-	biotin/lipoyl attachment domain-containing protein
2173	 61.00	0	2645555..2647054	-	499	158522190	-	Dole_2179	-	carbamoyl-phosphate synthase L chain ATP-binding
2174	 61.35	0	2647237..2648853	-	538	158522191	-	Dole_2180	-	propionyl-CoA carboxylase
2175	 61.56	0	2649066..2650181	-	371	158522192	-	Dole_2181	-	acyl-CoA dehydrogenase domain-containing protein
2176	 59.32	0	2650214..2651356	-	380	158522193	-	Dole_2182	-	acyl-CoA dehydrogenase domain-containing protein
2177	 56.94	0	2651774..2652277	-	167	158522194	-	Dole_2183	-	rubrerythrin
2178	 56.63	0	2652520..2653137	+	205	158522195	-	Dole_2184	-	dephospho-CoA kinase
2179	 58.18	0	2653191..2654474	+	427	158522196	-	Dole_2185	-	lytic transglycosylase catalytic
2180	 60.12	0	2654753..2655943	-	396	158522197	-	Dole_2186	-	peptidase M24
2181	 61.83	0	2656266..2657444	-	392	158522198	-	Dole_2187	-	acetyl-CoA acetyltransferase
2182	 59.58	0	2657588..2660848	-	1086	158522199	-	Dole_2188	-	methylmalonyl-CoA mutase, large subunit
2183	 56.80	0	2660852..2661520	-	222	158522200	-	Dole_2189	-	TetR family transcriptional regulator
2184	 54.02	0	2661930..2662601	+	223	158522201	-	Dole_2190	-	TetR family transcriptional regulator
2185	 58.91	0	2662702..2665665	+	987	158522202	-	Dole_2191	-	formate C-acetyltransferase
2186	 54.87	0	2665849..2666772	+	307	158522203	-	Dole_2192	-	glycyl-radical activating family protein
2187	 60.93	0	2666832..2667842	+	336	158522204	-	Dole_2193	-	NAD-dependent epimerase/dehydratase
2188	 59.55	0	2668160..2669002	+	280	158522205	-	Dole_2194	-	short-chain dehydrogenase/reductase SDR
2189	 60.04	0	2669013..2670023	-	336	158522206	-	Dole_2195	-	glyceraldehyde 3-phosphate dehydrogenase
2190	 55.24	0	2670203..2670736	+	177	158522207	-	Dole_2196	-	hypothetical protein
2191	 60.96	0	2670739..2671632	-	297	158522208	-	Dole_2197	-	methionine aminopeptidase, type I
2192	 57.28	0	2671820..2672224	+	134	158522209	-	Dole_2198	-	GTP cyclohydrolase I
2193	 56.15	0	2672264..2673337	+	357	158522210	-	Dole_2199	-	cyclic nucleotide-binding protein
2194	 54.21	0	2673410..2673730	-	106	158522211	-	Dole_2200	-	hypothetical protein
2195	 64.24	+1	2673793..2674122	-	109	158522212	-	Dole_2201	-	hypothetical protein
2196	 57.23	0	2674115..2675968	-	617	158522213	-	Dole_2202	-	hypothetical protein
2197	 60.29	0	2676007..2676822	-	271	158522214	-	Dole_2203	-	hypothetical protein
2198	 55.46	0	2676843..2678243	-	466	158522215	-	Dole_2204	-	hypothetical protein
2199	 60.08	0	2678231..2679262	-	343	158522216	-	Dole_2205	-	Holliday junction DNA helicase B
2200	 61.00	0	2679259..2679876	-	205	158522217	-	Dole_2206	-	DNA recombination protein RuvA
2201	 55.35	0	2679860..2680345	-	161	158522218	-	Dole_2207	-	crossover junction endodeoxyribonuclease
2202	 57.85	0	2680397..2681224	-	275	158522219	-	Dole_2208	-	Tol-Pal system YbgF
2203	 57.33	0	2681374..2681919	-	181	158522220	-	Dole_2209	-	peptidoglycan-associated lipoprotein
2204	 59.61	0	2681946..2683262	-	438	158522221	-	Dole_2210	-	beta-propeller repeat-containing to-pal system protein TolB
2205	 61.09	0	2683291..2684115	-	274	158522222	-	Dole_2211	-	TonB family protein
2206	 58.39	0	2684159..2684581	-	140	158522223	-	Dole_2212	-	biopolymer transport TolR
2207	 57.95	0	2684578..2685300	-	240	158522224	-	Dole_2213	-	Tol-Pal system TolQ
2208	 55.99	0	2685615..2687543	-	642	158522225	-	Dole_2214	-	heat shock protein 90
2209	 62.70	+1	2687919..2689103	-	394	158522226	-	Dole_2215	-	hypothetical protein
2210	 60.96	0	2689113..2690252	-	379	158522227	-	Dole_2216	-	peptidase T-like protein
2211	 55.70	0	2690624..2691298	+	224	158522228	-	Dole_2217	-	phosphatidylserine decarboxylase
2212	 58.57	0	2691295..2692134	+	279	158522229	-	Dole_2218	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
2213	 59.46	0	2692232..2693299	+	355	158522230	-	Dole_2219	-	3-isopropylmalate dehydrogenase
2214	 57.67	0	2693320..2694342	+	340	158522231	-	Dole_2220	-	aspartate-semialdehyde dehydrogenase
2215	 58.38	0	2694378..2694872	+	164	158522232	-	Dole_2221	-	transcription elongation factor GreA
2216	 60.66	0	2694905..2695270	+	121	158522233	-	Dole_2222	-	DNA-directed RNA polymerase, omega subunit
2217	 57.61	0	2695227..2696021	+	264	158522234	-	Dole_2223	-	PP-loop domain-containing protein
2218	 55.04	0	2696128..2696910	+	260	158522235	-	Dole_2224	-	hypothetical protein
2219	 59.25	0	2696900..2698207	-	435	158522236	-	Dole_2225	-	peptidase S13 D-Ala-D-Ala carboxypeptidase C
2220	 61.34	0	2698194..2699621	-	475	158522237	-	Dole_2226	-	putative aminopeptidase 1
2221	 60.09	0	2699805..2700245	-	146	158522238	-	Dole_2227	-	D-tyrosyl-tRNA(Tyr) deacylase
2222	 59.56	0	2700331..2700780	-	149	158522239	-	Dole_2228	-	3-dehydroquinate dehydratase, type II
2223	 62.42	+1	2700789..2701448	-	219	158522240	-	Dole_2229	-	ribulose-phosphate 3-epimerase
2224	 59.77	0	2701491..2702462	-	323	158522241	-	Dole_2230	-	PASTA domain-containing protein
2225	 62.33	0	2702455..2703861	-	468	158522242	-	Dole_2231	-	sun protein
2226	 63.80	+1	2703854..2704795	-	313	158522243	-	Dole_2232	-	methionyl-tRNA formyltransferase
2227	 59.58	0	2704780..2705301	-	173	158522244	-	Dole_2233	-	peptide deformylase
2228	 58.60	0	2705345..2706298	-	317	158522245	-	Dole_2234	-	riboflavin biosynthesis protein RibF
2229	 53.78	0	2706627..2706983	-	118	158522246	-	Dole_2235	-	response regulator receiver protein
2230	 58.85	0	2707311..2708897	+	528	158522247	-	Dole_2236	-	N-6 DNA methylase
2231	 50.20	-1	2708897..2710135	+	412	158522248	-	Dole_2237	-	restriction modification system DNA specificity subunit
2232	 53.52	0	2710132..2712246	+	704	158522249	-	Dole_2238	-	hypothetical protein
2233	 57.50	0	2712243..2715383	+	1046	158522250	-	Dole_2239	-	HsdR family type I site-specific deoxyribonuclease
2234	 48.95	-1	2715473..2715997	+	174	158522251	-	Dole_2240	-	hypothetical protein
2235	 43.15	-2	2716097..2716432	+	111	158522252	-	Dole_2241	-	addiction module killer protein
2236	 38.33	-2	2716429..2716728	+	99	158522253	-	Dole_2242	-	putative transcriptional regulator
2237	 61.24	0	2716853..2717995	+	380	158522254	-	Dole_2243	-	aminotransferase class V
2238	 46.53	-1	2718022..2718468	+	148	158522255	-	Dole_2244	-	hypothetical protein
2239	 55.13	0	2718534..2719799	+	421	158522256	-	Dole_2245	-	CDP-alcohol phosphatidyltransferase
2240	 49.32	-1	2720233..2722527	+	764	158522257	-	Dole_2246	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.