IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2049	 53.91	0	2505311..2506078	+	255	158522066	-	Dole_2055	-	DNA uptake lipoprotein-like protein
2050	 55.73	0	2506165..2506356	+	63	158522067	-	Dole_2056	-	ribosomal protein L28
2051	 56.86	0	2506452..2508602	-	716	158522068	-	Dole_2057	-	(p)ppGpp synthetase I, SpoT/RelA
2052	 60.18	0	2508682..2510208	-	508	158522069	-	Dole_2058	-	prolyl-tRNA synthetase
2053	 59.65	0	2510208..2511305	-	365	158522070	-	Dole_2059	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
2054	 60.54	0	2511579..2512508	+	309	158522071	-	Dole_2060	-	periplasmic binding protein
2055	 61.93	0	2512505..2513518	+	337	158522072	-	Dole_2061	-	transport system permease protein
2056	 60.92	0	2513515..2514315	+	266	158522073	-	Dole_2062	-	ABC transporter-related protein
2057	 56.65	0	2514490..2515647	+	385	158522074	-	Dole_2063	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2058	 58.90	0	2515662..2516729	+	355	158522075	-	Dole_2064	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2059	 61.36	0	2517238..2518368	+	376	158522076	-	Dole_2065	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2060	 54.23	0	2518386..2518586	-	66	158522077	-	Dole_2066	-	hypothetical protein
2061	 58.97	0	2518593..2519528	-	311	158522078	-	Dole_2067	-	hypothetical protein
2062	 60.14	0	2519625..2521814	-	729	158522079	-	Dole_2068	-	ABC-type transport system protein involved in gliding motility auxiliary component-like protein
2063	 59.01	0	2521827..2522531	-	234	158522080	-	Dole_2069	-	ABC-2 type transporter
2064	 62.04	0	2522533..2523483	-	316	158522081	-	Dole_2070	-	ABC transporter-related protein
2065	 59.71	0	2523794..2524684	+	296	158522082	-	Dole_2071	-	hypothetical protein
2066	 56.08	0	2524923..2525555	-	210	158522083	-	Dole_2072	-	beta-lactamase domain-containing protein
2067	 56.70	0	2525586..2525846	-	86	158522084	-	Dole_2073	-	hypothetical protein
2068	 59.40	0	2525989..2527365	-	458	158522085	-	Dole_2074	-	tryptophan synthase subunit beta
2069	 55.48	0	2527369..2527833	-	154	158522086	-	Dole_2075	-	NusB antitermination factor
2070	 60.34	0	2527840..2528313	-	157	158522087	-	Dole_2076	-	6,7-dimethyl-8-ribityllumazine synthase
2071	 59.42	0	2528432..2529646	-	404	158522088	-	Dole_2077	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
2072	 60.22	0	2529708..2530358	-	216	158522089	-	Dole_2078	-	riboflavin synthase, alpha subunit
2073	 61.72	0	2530358..2531449	-	363	158522090	-	Dole_2079	-	riboflavin biosynthesis protein RibD
2074	 55.92	0	2531521..2531976	-	151	158522091	-	Dole_2080	-	ATP-cone domain-containing protein
2075	 60.26	0	2531992..2532459	-	155	158522092	-	Dole_2081	-	CMP/dCMP deaminase zinc-binding
2076	 62.54	+1	2532452..2533711	-	419	158522093	-	Dole_2082	-	glycine hydroxymethyltransferase
2077	 53.68	0	2533770..2534000	-	76	158522094	-	Dole_2083	-	acyl carrier protein
2078	 64.28	+1	2534129..2534881	-	250	158522095	-	Dole_2084	-	3-oxoacyl-(acyl-carrier-protein) reductase
2079	 60.87	0	2534925..2535062	-	45	158522096	-	Dole_2085	-	ribosomal protein L32
2080	 61.14	0	2535280..2535840	-	186	158522097	-	Dole_2086	-	hypothetical protein
2081	 59.37	0	2535879..2537207	-	442	158522098	-	Dole_2087	-	hypothetical protein
2082	 43.04	-2	2537460..2538602	-	380	158522099	-	Dole_2088	-	hypothetical protein
2083	 45.07	-1	2538615..2539040	-	141	158522100	-	Dole_2089	-	hypothetical protein
2084	 46.29	-1	2539037..2540209	-	390	158522101	-	Dole_2090	-	hypothetical protein
2085	 41.40	-2	2540420..2541250	+	276	158522102	-	Dole_2091	-	hypothetical protein
2086	 58.33	0	2541255..2541926	-	223	158522103	-	Dole_2092	-	DNA repair protein RadC
2087	 44.07	-2	2542111..2543544	-	477	158522104	-	Dole_2093	-	restriction modification system DNA specificity subunit
2088	 51.80	0	2543541..2544569	-	342	158522105	-	Dole_2094	-	hypothetical protein
2089	 56.50	0	2544566..2546011	-	481	158522106	-	Dole_2095	-	N-6 DNA methylase
2090	 51.87	0	2546043..2548712	-	889	158522107	-	Dole_2096	-	type III restriction protein res subunit
2091	 44.18	-2	2548855..2549721	-	288	158522108	-	Dole_2097	-	UbiA prenyltransferase
2092	 58.30	0	2550118..2550834	+	238	158522109	-	Dole_2098	-	sugar fermentation stimulation protein
2093	 53.95	0	2550896..2551249	+	117	158522110	-	Dole_2099	-	hypothetical protein
2094	 56.21	0	2551255..2551914	-	219	158522111	-	Dole_2100	-	hypothetical protein
2095	 60.21	0	2552019..2553908	-	629	158522112	-	Dole_2101	-	aldehyde ferredoxin oxidoreductase
2096	 58.88	0	2553966..2554646	-	226	158522113	-	Dole_2102	-	Crp/FNR family transcriptional regulator
2097	 59.05	0	2555051..2555785	+	244	158522114	-	Dole_2103	-	metal dependent phosphohydrolase
2098	 60.82	0	2555801..2556553	+	250	158522115	-	Dole_2104	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2099	 59.93	0	2556736..2558502	-	588	158522116	-	Dole_2105	-	PAS modulated sigma54 specific transcriptional regulator
2100	 63.01	+1	2558731..2560452	+	573	158522117	-	Dole_2106	-	single-stranded-DNA-specific exonuclease RecJ
2101	 53.81	0	2560626..2561045	+	139	158522118	-	Dole_2107	-	hypothetical protein
2102	 58.48	0	2561118..2562119	+	333	158522119	-	Dole_2108	-	ribonuclease Z
2103	 59.66	0	2562116..2562643	+	175	158522120	-	Dole_2109	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
2104	 59.86	0	2562757..2563755	+	332	158522121	-	Dole_2110	-	KpsF/GutQ family protein
2105	 57.98	0	2563963..2565297	+	444	158522122	-	Dole_2111	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
2106	 60.15	0	2565323..2565721	+	132	158522123	-	Dole_2112	-	hypothetical protein
2107	 57.19	0	2566289..2567692	+	467	158522124	-	Dole_2113	-	amidophosphoribosyltransferase
2108	 51.72	0	2567849..2568457	+	202	158522125	-	Dole_2114	-	hypothetical protein
2109	 59.16	0	2568459..2570309	-	616	158522126	-	Dole_2115	-	UvrD/REP helicase
2110	 54.95	0	2570684..2571016	+	110	158522127	-	Dole_2116	-	hypothetical protein
2111	 62.24	0	2571066..2572307	+	413	158522128	-	Dole_2117	-	Na+ dependent nucleoside transporter
2112	 59.17	0	2572650..2574491	-	613	158522129	-	Dole_2118	-	AMP-dependent synthetase and ligase
2113	 47.81	-1	2574519..2574815	-	98	158522130	-	Dole_2119	-	plasmid stabilization system protein
2114	 49.29	-1	2574812..2575093	-	93	158522131	-	Dole_2120	-	prevent-host-death family protein
2115	 59.84	0	2575505..2576485	+	326	158522132	-	Dole_2121	-	radical SAM domain-containing protein
2116	 60.31	0	2576789..2578267	+	492	158522133	-	Dole_2122	-	30S ribosomal protein S1
2117	 56.88	0	2578326..2578805	+	159	158522134	-	Dole_2123	-	CBS domain-containing protein
2118	 62.11	0	2578812..2580368	-	518	158522135	-	Dole_2124	-	hypothetical protein
2119	 63.12	+1	2580507..2581943	+	478	158522136	-	Dole_2125	-	pyruvate kinase
2120	 52.14	0	2582022..2582441	-	139	158522137	-	Dole_2126	-	response regulator receiver protein
2121	 54.20	0	2582680..2584131	-	483	158522138	-	Dole_2127	-	histidine kinase
2122	 60.48	0	2584314..2585639	-	441	158522139	-	Dole_2128	-	hypothetical protein
2123	 56.90	0	2585669..2586190	-	173	158522140	-	Dole_2129	-	hypothetical protein
2124	 57.24	0	2586193..2586807	-	204	158522141	-	Dole_2130	-	hypothetical protein
2125	 58.37	0	2587140..2587766	-	208	158522142	-	Dole_2131	-	hypothetical protein
2126	 58.40	0	2587981..2588718	-	245	158522143	-	Dole_2132	-	ABC transporter-related protein
2127	 61.45	0	2588693..2590072	-	459	158522144	-	Dole_2133	-	recombination factor protein RarA
2128	 57.59	0	2590181..2591557	-	458	158522145	-	Dole_2134	-	small GTP-binding protein
2129	 61.89	0	2591744..2593000	-	418	158522146	-	Dole_2135	-	diaminopimelate decarboxylase
2130	 55.70	0	2593168..2593641	+	157	158522147	-	Dole_2136	-	GCN5-related N-acetyltransferase
2131	 63.95	+1	2593645..2594526	+	293	158522148	-	Dole_2137	-	hypothetical protein
2132	 56.73	0	2594549..2595172	-	207	158522149	-	Dole_2138	-	hypothetical protein
2133	 58.96	0	2595460..2598495	+	1011	158522150	-	Dole_2139	-	hypothetical protein
2134	 54.99	0	2598580..2600394	+	604	158522151	-	Dole_2140	-	radical SAM domain-containing protein
2135	 62.21	0	2600421..2601026	-	201	158522152	-	Dole_2141	-	cation efflux protein
2136	 62.25	0	2601043..2601699	-	218	158522153	-	Dole_2142	-	metallophosphoesterase
2137	 61.69	0	2601748..2603013	-	421	158522154	-	Dole_2143	-	NADH:flavin oxidoreductase/NADH oxidase
2138	 58.11	0	2603032..2603475	-	147	158522155	-	Dole_2144	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
2139	 65.23	+1	2603603..2604088	+	161	158522156	-	Dole_2145	-	Rossmann fold nucleotide-binding protein
2140	 55.78	0	2604124..2605326	-	400	158522157	-	Dole_2146	-	hypothetical protein
2141	 65.07	+1	2605570..2606256	-	228	158522158	-	Dole_2147	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2142	 53.78	0	2606328..2607638	-	436	158522159	-	Dole_2148	-	hypothetical protein
2143	 55.74	0	2608097..2608828	-	243	158522160	-	Dole_2149	-	hypothetical protein
2144	 62.92	+1	2608856..2609977	-	373	158522161	-	Dole_2150	-	hypothetical protein
2145	 57.33	0	2610400..2612616	-	738	158522162	-	Dole_2151	-	RpoD family RNA polymerase sigma factor
2146	 58.06	0	2612648..2613007	-	119	158522163	-	Dole_2152	-	putative histone H1-like protein
2147	 57.27	0	2613004..2614845	-	613	158522164	-	Dole_2153	-	DNA primase
2148	 61.90	0	2614848..2615603	-	251	158522165	-	Dole_2154	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.