version 1.0
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167 3265 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2041 26.77 -2 2489773..2490534 - 253 158522058 - Dole_2047 - hypothetical protein 2042 52.42 0 2490537..2493455 - 972 158522059 - Dole_2048 - YD repeat-containing protein 2043 34.47 -2 2493795..2494235 - 146 158522060 - Dole_2049 - hypothetical protein 2044 54.37 0 2494250..2500057 - 1935 158522061 - Dole_2050 - YD repeat-containing protein 2045 55.29 0 2500589..2501335 - 248 158522062 - Dole_2051 - hypothetical protein 2046 59.00 0 2501690..2502928 - 412 158522063 - Dole_2052 - glycosyl transferase group 1 2047 55.26 0 2503203..2503544 + 113 158522064 - Dole_2053 - hypothetical protein 2048 51.77 0 2504046..2505314 + 422 158522065 - Dole_2054 - hypothetical protein 2049 53.91 0 2505311..2506078 + 255 158522066 - Dole_2055 - DNA uptake lipoprotein-like protein 2050 55.73 0 2506165..2506356 + 63 158522067 - Dole_2056 - ribosomal protein L28 2051 56.86 0 2506452..2508602 - 716 158522068 - Dole_2057 - (p)ppGpp synthetase I, SpoT/RelA 2052 60.18 0 2508682..2510208 - 508 158522069 - Dole_2058 - prolyl-tRNA synthetase 2053 59.65 0 2510208..2511305 - 365 158522070 - Dole_2059 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 2054 60.54 0 2511579..2512508 + 309 158522071 - Dole_2060 - periplasmic binding protein 2055 61.93 0 2512505..2513518 + 337 158522072 - Dole_2061 - transport system permease protein 2056 60.92 0 2513515..2514315 + 266 158522073 - Dole_2062 - ABC transporter-related protein 2057 56.65 0 2514490..2515647 + 385 158522074 - Dole_2063 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2058 58.90 0 2515662..2516729 + 355 158522075 - Dole_2064 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2059 61.36 0 2517238..2518368 + 376 158522076 - Dole_2065 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2060 54.23 0 2518386..2518586 - 66 158522077 - Dole_2066 - hypothetical protein 2061 58.97 0 2518593..2519528 - 311 158522078 - Dole_2067 - hypothetical protein 2062 60.14 0 2519625..2521814 - 729 158522079 - Dole_2068 - ABC-type transport system protein involved in gliding motility auxiliary component-like protein 2063 59.01 0 2521827..2522531 - 234 158522080 - Dole_2069 - ABC-2 type transporter 2064 62.04 0 2522533..2523483 - 316 158522081 - Dole_2070 - ABC transporter-related protein 2065 59.71 0 2523794..2524684 + 296 158522082 - Dole_2071 - hypothetical protein 2066 56.08 0 2524923..2525555 - 210 158522083 - Dole_2072 - beta-lactamase domain-containing protein 2067 56.70 0 2525586..2525846 - 86 158522084 - Dole_2073 - hypothetical protein 2068 59.40 0 2525989..2527365 - 458 158522085 - Dole_2074 - tryptophan synthase subunit beta 2069 55.48 0 2527369..2527833 - 154 158522086 - Dole_2075 - NusB antitermination factor 2070 60.34 0 2527840..2528313 - 157 158522087 - Dole_2076 - 6,7-dimethyl-8-ribityllumazine synthase 2071 59.42 0 2528432..2529646 - 404 158522088 - Dole_2077 - 3,4-dihydroxy-2-butanone 4-phosphate synthase 2072 60.22 0 2529708..2530358 - 216 158522089 - Dole_2078 - riboflavin synthase, alpha subunit 2073 61.72 0 2530358..2531449 - 363 158522090 - Dole_2079 - riboflavin biosynthesis protein RibD 2074 55.92 0 2531521..2531976 - 151 158522091 - Dole_2080 - ATP-cone domain-containing protein 2075 60.26 0 2531992..2532459 - 155 158522092 - Dole_2081 - CMP/dCMP deaminase zinc-binding 2076 62.54 +1 2532452..2533711 - 419 158522093 - Dole_2082 - glycine hydroxymethyltransferase 2077 53.68 0 2533770..2534000 - 76 158522094 - Dole_2083 - acyl carrier protein 2078 64.28 +1 2534129..2534881 - 250 158522095 - Dole_2084 - 3-oxoacyl-(acyl-carrier-protein) reductase 2079 60.87 0 2534925..2535062 - 45 158522096 - Dole_2085 - ribosomal protein L32 2080 61.14 0 2535280..2535840 - 186 158522097 - Dole_2086 - hypothetical protein 2081 59.37 0 2535879..2537207 - 442 158522098 - Dole_2087 - hypothetical protein 2082 43.04 -2 2537460..2538602 - 380 158522099 - Dole_2088 - hypothetical protein 2083 45.07 -1 2538615..2539040 - 141 158522100 - Dole_2089 - hypothetical protein 2084 46.29 -1 2539037..2540209 - 390 158522101 - Dole_2090 - hypothetical protein 2085 41.40 -2 2540420..2541250 + 276 158522102 - Dole_2091 - hypothetical protein 2086 58.33 0 2541255..2541926 - 223 158522103 - Dole_2092 - DNA repair protein RadC 2087 44.07 -2 2542111..2543544 - 477 158522104 - Dole_2093 - restriction modification system DNA specificity subunit 2088 51.80 0 2543541..2544569 - 342 158522105 - Dole_2094 - hypothetical protein 2089 56.50 0 2544566..2546011 - 481 158522106 - Dole_2095 - N-6 DNA methylase 2090 51.87 0 2546043..2548712 - 889 158522107 - Dole_2096 - type III restriction protein res subunit 2091 44.18 -2 2548855..2549721 - 288 158522108 - Dole_2097 - UbiA prenyltransferase 2092 58.30 0 2550118..2550834 + 238 158522109 - Dole_2098 - sugar fermentation stimulation protein 2093 53.95 0 2550896..2551249 + 117 158522110 - Dole_2099 - hypothetical protein 2094 56.21 0 2551255..2551914 - 219 158522111 - Dole_2100 - hypothetical protein 2095 60.21 0 2552019..2553908 - 629 158522112 - Dole_2101 - aldehyde ferredoxin oxidoreductase 2096 58.88 0 2553966..2554646 - 226 158522113 - Dole_2102 - Crp/FNR family transcriptional regulator 2097 59.05 0 2555051..2555785 + 244 158522114 - Dole_2103 - metal dependent phosphohydrolase 2098 60.82 0 2555801..2556553 + 250 158522115 - Dole_2104 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2099 59.93 0 2556736..2558502 - 588 158522116 - Dole_2105 - PAS modulated sigma54 specific transcriptional regulator 2100 63.01 +1 2558731..2560452 + 573 158522117 - Dole_2106 - single-stranded-DNA-specific exonuclease RecJ 2101 53.81 0 2560626..2561045 + 139 158522118 - Dole_2107 - hypothetical protein 2102 58.48 0 2561118..2562119 + 333 158522119 - Dole_2108 - ribonuclease Z 2103 59.66 0 2562116..2562643 + 175 158522120 - Dole_2109 - putative PTS IIA-like nitrogen-regulatory protein PtsN 2104 59.86 0 2562757..2563755 + 332 158522121 - Dole_2110 - KpsF/GutQ family protein 2105 57.98 0 2563963..2565297 + 444 158522122 - Dole_2111 - diphosphate--fructose-6-phosphate 1-phosphotransferase 2106 60.15 0 2565323..2565721 + 132 158522123 - Dole_2112 - hypothetical protein 2107 57.19 0 2566289..2567692 + 467 158522124 - Dole_2113 - amidophosphoribosyltransferase 2108 51.72 0 2567849..2568457 + 202 158522125 - Dole_2114 - hypothetical protein 2109 59.16 0 2568459..2570309 - 616 158522126 - Dole_2115 - UvrD/REP helicase 2110 54.95 0 2570684..2571016 + 110 158522127 - Dole_2116 - hypothetical protein 2111 62.24 0 2571066..2572307 + 413 158522128 - Dole_2117 - Na+ dependent nucleoside transporter 2112 59.17 0 2572650..2574491 - 613 158522129 - Dole_2118 - AMP-dependent synthetase and ligase 2113 47.81 -1 2574519..2574815 - 98 158522130 - Dole_2119 - plasmid stabilization system protein 2114 49.29 -1 2574812..2575093 - 93 158522131 - Dole_2120 - prevent-host-death family protein 2115 59.84 0 2575505..2576485 + 326 158522132 - Dole_2121 - radical SAM domain-containing protein 2116 60.31 0 2576789..2578267 + 492 158522133 - Dole_2122 - 30S ribosomal protein S1 2117 56.88 0 2578326..2578805 + 159 158522134 - Dole_2123 - CBS domain-containing protein 2118 62.11 0 2578812..2580368 - 518 158522135 - Dole_2124 - hypothetical protein 2119 63.12 +1 2580507..2581943 + 478 158522136 - Dole_2125 - pyruvate kinase 2120 52.14 0 2582022..2582441 - 139 158522137 - Dole_2126 - response regulator receiver protein 2121 54.20 0 2582680..2584131 - 483 158522138 - Dole_2127 - histidine kinase 2122 60.48 0 2584314..2585639 - 441 158522139 - Dole_2128 - hypothetical protein 2123 56.90 0 2585669..2586190 - 173 158522140 - Dole_2129 - hypothetical protein 2124 57.24 0 2586193..2586807 - 204 158522141 - Dole_2130 - hypothetical protein 2125 58.37 0 2587140..2587766 - 208 158522142 - Dole_2131 - hypothetical protein 2126 58.40 0 2587981..2588718 - 245 158522143 - Dole_2132 - ABC transporter-related protein 2127 61.45 0 2588693..2590072 - 459 158522144 - Dole_2133 - recombination factor protein RarA 2128 57.59 0 2590181..2591557 - 458 158522145 - Dole_2134 - small GTP-binding protein 2129 61.89 0 2591744..2593000 - 418 158522146 - Dole_2135 - diaminopimelate decarboxylase 2130 55.70 0 2593168..2593641 + 157 158522147 - Dole_2136 - GCN5-related N-acetyltransferase 2131 63.95 +1 2593645..2594526 + 293 158522148 - Dole_2137 - hypothetical protein 2132 56.73 0 2594549..2595172 - 207 158522149 - Dole_2138 - hypothetical protein 2133 58.96 0 2595460..2598495 + 1011 158522150 - Dole_2139 - hypothetical protein 2134 54.99 0 2598580..2600394 + 604 158522151 - Dole_2140 - radical SAM domain-containing protein 2135 62.21 0 2600421..2601026 - 201 158522152 - Dole_2141 - cation efflux protein 2136 62.25 0 2601043..2601699 - 218 158522153 - Dole_2142 - metallophosphoesterase 2137 61.69 0 2601748..2603013 - 421 158522154 - Dole_2143 - NADH:flavin oxidoreductase/NADH oxidase 2138 58.11 0 2603032..2603475 - 147 158522155 - Dole_2144 - pyridoxamine 5'-phosphate oxidase-related FMN-binding 2139 65.23 +1 2603603..2604088 + 161 158522156 - Dole_2145 - Rossmann fold nucleotide-binding protein 2140 55.78 0 2604124..2605326 - 400 158522157 - Dole_2146 - hypothetical protein 56.47 MEAN 5.93 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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