IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2007	 57.83	0	2438746..2439978	+	410	158522024	-	Dole_2013	-	peptidase M29 aminopeptidase II
2008	 59.03	0	2440159..2443143	-	994	158522025	-	Dole_2014	-	peptidase C25 gingipain
2009	 58.29	0	2443288..2444493	-	401	158522026	-	Dole_2015	-	mannose-6-phosphate isomerase, class I
2010	 59.17	0	2444654..2446975	-	773	158522027	-	Dole_2016	-	SH3 type 3 domain-containing protein
2011	 56.25	0	2447031..2447894	-	287	158522028	-	Dole_2017	-	hypothetical protein
2012	 46.77	-1	2448081..2448281	-	66	158522029	-	Dole_2018	-	cold-shock DNA-binding domain-containing protein
2013	 56.24	0	2448470..2449198	-	242	158522030	-	Dole_2019	-	ABC transporter-related protein
2014	 56.39	0	2449191..2449949	-	252	158522031	-	Dole_2020	-	cobalt ABC transporter, inner membrane subunit CbiQ
2015	 60.80	0	2449957..2450655	-	232	158522032	-	Dole_2021	-	hypothetical protein
2016	 58.25	0	2450679..2451272	-	197	158522033	-	Dole_2022	-	cobalamin (vitamin B12) biosynthesis CbiM protein
2017	 55.30	0	2451296..2452069	-	257	158522034	-	Dole_2023	-	hypothetical protein
2018	 62.23	0	2452252..2453580	-	442	158522035	-	Dole_2024	-	phosphoglucosamine mutase
2019	 57.01	0	2453577..2454860	-	427	158522036	-	Dole_2025	-	UDP-N-acetylglucosamine pyrophosphorylase
2020	 55.71	0	2455026..2456732	+	568	158522037	-	Dole_2026	-	metal dependent phosphohydrolase
2021	 57.21	0	2456803..2457204	-	133	158522038	-	Dole_2027	-	hypothetical protein
2022	 55.04	0	2457501..2458274	-	257	158522039	-	Dole_2028	-	hypothetical protein
2023	 60.39	0	2458610..2459899	-	429	158522040	-	Dole_2029	-	adenylosuccinate synthetase
2024	 58.96	0	2459928..2460368	-	146	158522041	-	Dole_2030	-	CMP/dCMP deaminase zinc-binding
2025	 61.24	0	2460389..2461825	-	478	158522042	-	Dole_2031	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
2026	 61.50	0	2461822..2462673	-	283	158522043	-	Dole_2032	-	3'(2'),5'-bisphosphate nucleotidase
2027	 58.55	0	2462998..2463909	-	303	158522044	-	Dole_2033	-	methenyltetrahydrofolate cyclohydrolase
2028	 61.16	0	2463999..2465051	-	350	158522045	-	Dole_2034	-	N-acetyl-gamma-glutamyl-phosphate reductase
2029	 59.18	0	2465857..2467044	+	395	158522046	-	Dole_2035	-	putative RNA methylase
2030	 62.19	0	2467348..2469021	+	557	158522047	-	Dole_2036	-	dihydroxy-acid dehydratase
2031	 59.59	0	2469037..2470731	+	564	158522048	-	Dole_2037	-	acetolactate synthase, large subunit, biosynthetic type
2032	 60.28	0	2470747..2471247	+	166	158522049	-	Dole_2038	-	acetolactate synthase, small subunit
2033	 60.15	0	2471286..2472344	+	352	158522050	-	Dole_2039	-	ketol-acid reductoisomerase
2034	 59.30	0	2472529..2474157	+	542	158522051	-	Dole_2040	-	putative alpha-isopropylmalate/homocitrate synthase family transferase
2035	 60.87	0	2474166..2475701	+	511	158522052	-	Dole_2041	-	2-isopropylmalate synthase
2036	 57.61	0	2475751..2476269	-	172	158522053	-	Dole_2042	-	hypothetical protein
2037	 57.51	0	2476378..2482473	-	2031	158522054	-	Dole_2043	-	parallel beta-helix repeat-containing protein
2038	 26.61	-2	2483012..2483770	-	252	158522055	-	Dole_2044	-	hypothetical protein
2039	 51.42	0	2483895..2486117	-	740	158522056	-	Dole_2045	-	YD repeat-containing protein
2040	 54.73	0	2486741..2489470	-	909	158522057	-	Dole_2046	-	YD repeat-containing protein
2041	 26.77	-2	2489773..2490534	-	253	158522058	-	Dole_2047	-	hypothetical protein
2042	 52.42	0	2490537..2493455	-	972	158522059	-	Dole_2048	-	YD repeat-containing protein
2043	 34.47	-2	2493795..2494235	-	146	158522060	-	Dole_2049	-	hypothetical protein
2044	 54.37	0	2494250..2500057	-	1935	158522061	-	Dole_2050	-	YD repeat-containing protein
2045	 55.29	0	2500589..2501335	-	248	158522062	-	Dole_2051	-	hypothetical protein
2046	 59.00	0	2501690..2502928	-	412	158522063	-	Dole_2052	-	glycosyl transferase group 1
2047	 55.26	0	2503203..2503544	+	113	158522064	-	Dole_2053	-	hypothetical protein
2048	 51.77	0	2504046..2505314	+	422	158522065	-	Dole_2054	-	hypothetical protein
2049	 53.91	0	2505311..2506078	+	255	158522066	-	Dole_2055	-	DNA uptake lipoprotein-like protein
2050	 55.73	0	2506165..2506356	+	63	158522067	-	Dole_2056	-	ribosomal protein L28
2051	 56.86	0	2506452..2508602	-	716	158522068	-	Dole_2057	-	(p)ppGpp synthetase I, SpoT/RelA
2052	 60.18	0	2508682..2510208	-	508	158522069	-	Dole_2058	-	prolyl-tRNA synthetase
2053	 59.65	0	2510208..2511305	-	365	158522070	-	Dole_2059	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
2054	 60.54	0	2511579..2512508	+	309	158522071	-	Dole_2060	-	periplasmic binding protein
2055	 61.93	0	2512505..2513518	+	337	158522072	-	Dole_2061	-	transport system permease protein
2056	 60.92	0	2513515..2514315	+	266	158522073	-	Dole_2062	-	ABC transporter-related protein
2057	 56.65	0	2514490..2515647	+	385	158522074	-	Dole_2063	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2058	 58.90	0	2515662..2516729	+	355	158522075	-	Dole_2064	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2059	 61.36	0	2517238..2518368	+	376	158522076	-	Dole_2065	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2060	 54.23	0	2518386..2518586	-	66	158522077	-	Dole_2066	-	hypothetical protein
2061	 58.97	0	2518593..2519528	-	311	158522078	-	Dole_2067	-	hypothetical protein
2062	 60.14	0	2519625..2521814	-	729	158522079	-	Dole_2068	-	ABC-type transport system protein involved in gliding motility auxiliary component-like protein
2063	 59.01	0	2521827..2522531	-	234	158522080	-	Dole_2069	-	ABC-2 type transporter
2064	 62.04	0	2522533..2523483	-	316	158522081	-	Dole_2070	-	ABC transporter-related protein
2065	 59.71	0	2523794..2524684	+	296	158522082	-	Dole_2071	-	hypothetical protein
2066	 56.08	0	2524923..2525555	-	210	158522083	-	Dole_2072	-	beta-lactamase domain-containing protein
2067	 56.70	0	2525586..2525846	-	86	158522084	-	Dole_2073	-	hypothetical protein
2068	 59.40	0	2525989..2527365	-	458	158522085	-	Dole_2074	-	tryptophan synthase subunit beta
2069	 55.48	0	2527369..2527833	-	154	158522086	-	Dole_2075	-	NusB antitermination factor
2070	 60.34	0	2527840..2528313	-	157	158522087	-	Dole_2076	-	6,7-dimethyl-8-ribityllumazine synthase
2071	 59.42	0	2528432..2529646	-	404	158522088	-	Dole_2077	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
2072	 60.22	0	2529708..2530358	-	216	158522089	-	Dole_2078	-	riboflavin synthase, alpha subunit
2073	 61.72	0	2530358..2531449	-	363	158522090	-	Dole_2079	-	riboflavin biosynthesis protein RibD
2074	 55.92	0	2531521..2531976	-	151	158522091	-	Dole_2080	-	ATP-cone domain-containing protein
2075	 60.26	0	2531992..2532459	-	155	158522092	-	Dole_2081	-	CMP/dCMP deaminase zinc-binding
2076	 62.54	+1	2532452..2533711	-	419	158522093	-	Dole_2082	-	glycine hydroxymethyltransferase
2077	 53.68	0	2533770..2534000	-	76	158522094	-	Dole_2083	-	acyl carrier protein
2078	 64.28	+1	2534129..2534881	-	250	158522095	-	Dole_2084	-	3-oxoacyl-(acyl-carrier-protein) reductase
2079	 60.87	0	2534925..2535062	-	45	158522096	-	Dole_2085	-	ribosomal protein L32
2080	 61.14	0	2535280..2535840	-	186	158522097	-	Dole_2086	-	hypothetical protein
2081	 59.37	0	2535879..2537207	-	442	158522098	-	Dole_2087	-	hypothetical protein
2082	 43.04	-2	2537460..2538602	-	380	158522099	-	Dole_2088	-	hypothetical protein
2083	 45.07	-1	2538615..2539040	-	141	158522100	-	Dole_2089	-	hypothetical protein
2084	 46.29	-1	2539037..2540209	-	390	158522101	-	Dole_2090	-	hypothetical protein
2085	 41.40	-2	2540420..2541250	+	276	158522102	-	Dole_2091	-	hypothetical protein
2086	 58.33	0	2541255..2541926	-	223	158522103	-	Dole_2092	-	DNA repair protein RadC
2087	 44.07	-2	2542111..2543544	-	477	158522104	-	Dole_2093	-	restriction modification system DNA specificity subunit
2088	 51.80	0	2543541..2544569	-	342	158522105	-	Dole_2094	-	hypothetical protein
2089	 56.50	0	2544566..2546011	-	481	158522106	-	Dole_2095	-	N-6 DNA methylase
2090	 51.87	0	2546043..2548712	-	889	158522107	-	Dole_2096	-	type III restriction protein res subunit
2091	 44.18	-2	2548855..2549721	-	288	158522108	-	Dole_2097	-	UbiA prenyltransferase
2092	 58.30	0	2550118..2550834	+	238	158522109	-	Dole_2098	-	sugar fermentation stimulation protein
2093	 53.95	0	2550896..2551249	+	117	158522110	-	Dole_2099	-	hypothetical protein
2094	 56.21	0	2551255..2551914	-	219	158522111	-	Dole_2100	-	hypothetical protein
2095	 60.21	0	2552019..2553908	-	629	158522112	-	Dole_2101	-	aldehyde ferredoxin oxidoreductase
2096	 58.88	0	2553966..2554646	-	226	158522113	-	Dole_2102	-	Crp/FNR family transcriptional regulator
2097	 59.05	0	2555051..2555785	+	244	158522114	-	Dole_2103	-	metal dependent phosphohydrolase
2098	 60.82	0	2555801..2556553	+	250	158522115	-	Dole_2104	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2099	 59.93	0	2556736..2558502	-	588	158522116	-	Dole_2105	-	PAS modulated sigma54 specific transcriptional regulator
2100	 63.01	+1	2558731..2560452	+	573	158522117	-	Dole_2106	-	single-stranded-DNA-specific exonuclease RecJ
2101	 53.81	0	2560626..2561045	+	139	158522118	-	Dole_2107	-	hypothetical protein
2102	 58.48	0	2561118..2562119	+	333	158522119	-	Dole_2108	-	ribonuclease Z
2103	 59.66	0	2562116..2562643	+	175	158522120	-	Dole_2109	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
2104	 59.86	0	2562757..2563755	+	332	158522121	-	Dole_2110	-	KpsF/GutQ family protein
2105	 57.98	0	2563963..2565297	+	444	158522122	-	Dole_2111	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
2106	 60.15	0	2565323..2565721	+	132	158522123	-	Dole_2112	-	hypothetical protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.