version 1.0
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167 3265 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1992 52.38 0 2419640..2420080 + 146 158522009 - Dole_1998 - hypothetical protein 1993 55.61 0 2420156..2421421 + 421 158522010 - Dole_1999 - hypothetical protein 1994 60.06 0 2421552..2423231 + 559 158522011 - Dole_2000 - methyl-accepting chemotaxis sensory transducer 1995 59.29 0 2423382..2424683 - 433 158522012 - Dole_2001 - TRAP dicarboxylate transporter, DctM subunit 1996 59.30 0 2424680..2425168 - 162 158522013 - Dole_2002 - tripartite ATP-independent periplasmic transporter DctQ 1997 60.13 0 2425210..2426280 - 356 158522014 - Dole_2003 - TRAP dicarboxylate transporter- DctP subunit 1998 56.59 0 2426708..2428612 + 634 158522015 - Dole_2004 - multi-sensor signal transduction histidine kinase 1999 48.68 -1 2428854..2430287 - 477 158522016 - Dole_2005 - peptidase C14 caspase catalytic subunit p20 2000 56.96 0 2430943..2432034 + 363 158522017 - Dole_2006 - hypothetical protein 2001 61.24 0 2432089..2433102 + 337 158522018 - Dole_2007 - hypothetical protein 2002 62.75 +1 2433196..2434242 + 348 158522019 - Dole_2008 - 3-oxoacyl-(acyl carrier protein) synthase III 2003 57.00 0 2434242..2435141 + 299 158522020 - Dole_2009 - alpha/beta hydrolase fold 2004 60.06 0 2435170..2436864 + 564 158522021 - Dole_2010 - peptide synthase 2005 61.03 0 2436867..2437859 + 330 158522022 - Dole_2011 - 3-beta hydroxysteroid dehydrogenase/isomerase 2006 58.58 0 2437967..2438572 - 201 158522023 - Dole_2012 - peptidoglycan-binding LysM 2007 57.83 0 2438746..2439978 + 410 158522024 - Dole_2013 - peptidase M29 aminopeptidase II 2008 59.03 0 2440159..2443143 - 994 158522025 - Dole_2014 - peptidase C25 gingipain 2009 58.29 0 2443288..2444493 - 401 158522026 - Dole_2015 - mannose-6-phosphate isomerase, class I 2010 59.17 0 2444654..2446975 - 773 158522027 - Dole_2016 - SH3 type 3 domain-containing protein 2011 56.25 0 2447031..2447894 - 287 158522028 - Dole_2017 - hypothetical protein 2012 46.77 -1 2448081..2448281 - 66 158522029 - Dole_2018 - cold-shock DNA-binding domain-containing protein 2013 56.24 0 2448470..2449198 - 242 158522030 - Dole_2019 - ABC transporter-related protein 2014 56.39 0 2449191..2449949 - 252 158522031 - Dole_2020 - cobalt ABC transporter, inner membrane subunit CbiQ 2015 60.80 0 2449957..2450655 - 232 158522032 - Dole_2021 - hypothetical protein 2016 58.25 0 2450679..2451272 - 197 158522033 - Dole_2022 - cobalamin (vitamin B12) biosynthesis CbiM protein 2017 55.30 0 2451296..2452069 - 257 158522034 - Dole_2023 - hypothetical protein 2018 62.23 0 2452252..2453580 - 442 158522035 - Dole_2024 - phosphoglucosamine mutase 2019 57.01 0 2453577..2454860 - 427 158522036 - Dole_2025 - UDP-N-acetylglucosamine pyrophosphorylase 2020 55.71 0 2455026..2456732 + 568 158522037 - Dole_2026 - metal dependent phosphohydrolase 2021 57.21 0 2456803..2457204 - 133 158522038 - Dole_2027 - hypothetical protein 2022 55.04 0 2457501..2458274 - 257 158522039 - Dole_2028 - hypothetical protein 2023 60.39 0 2458610..2459899 - 429 158522040 - Dole_2029 - adenylosuccinate synthetase 2024 58.96 0 2459928..2460368 - 146 158522041 - Dole_2030 - CMP/dCMP deaminase zinc-binding 2025 61.24 0 2460389..2461825 - 478 158522042 - Dole_2031 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2026 61.50 0 2461822..2462673 - 283 158522043 - Dole_2032 - 3'(2'),5'-bisphosphate nucleotidase 2027 58.55 0 2462998..2463909 - 303 158522044 - Dole_2033 - methenyltetrahydrofolate cyclohydrolase 2028 61.16 0 2463999..2465051 - 350 158522045 - Dole_2034 - N-acetyl-gamma-glutamyl-phosphate reductase 2029 59.18 0 2465857..2467044 + 395 158522046 - Dole_2035 - putative RNA methylase 2030 62.19 0 2467348..2469021 + 557 158522047 - Dole_2036 - dihydroxy-acid dehydratase 2031 59.59 0 2469037..2470731 + 564 158522048 - Dole_2037 - acetolactate synthase, large subunit, biosynthetic type 2032 60.28 0 2470747..2471247 + 166 158522049 - Dole_2038 - acetolactate synthase, small subunit 2033 60.15 0 2471286..2472344 + 352 158522050 - Dole_2039 - ketol-acid reductoisomerase 2034 59.30 0 2472529..2474157 + 542 158522051 - Dole_2040 - putative alpha-isopropylmalate/homocitrate synthase family transferase 2035 60.87 0 2474166..2475701 + 511 158522052 - Dole_2041 - 2-isopropylmalate synthase 2036 57.61 0 2475751..2476269 - 172 158522053 - Dole_2042 - hypothetical protein 2037 57.51 0 2476378..2482473 - 2031 158522054 - Dole_2043 - parallel beta-helix repeat-containing protein 2038 26.61 -2 2483012..2483770 - 252 158522055 - Dole_2044 - hypothetical protein 2039 51.42 0 2483895..2486117 - 740 158522056 - Dole_2045 - YD repeat-containing protein 2040 54.73 0 2486741..2489470 - 909 158522057 - Dole_2046 - YD repeat-containing protein 2041 26.77 -2 2489773..2490534 - 253 158522058 - Dole_2047 - hypothetical protein 2042 52.42 0 2490537..2493455 - 972 158522059 - Dole_2048 - YD repeat-containing protein 2043 34.47 -2 2493795..2494235 - 146 158522060 - Dole_2049 - hypothetical protein 2044 54.37 0 2494250..2500057 - 1935 158522061 - Dole_2050 - YD repeat-containing protein 2045 55.29 0 2500589..2501335 - 248 158522062 - Dole_2051 - hypothetical protein 2046 59.00 0 2501690..2502928 - 412 158522063 - Dole_2052 - glycosyl transferase group 1 2047 55.26 0 2503203..2503544 + 113 158522064 - Dole_2053 - hypothetical protein 2048 51.77 0 2504046..2505314 + 422 158522065 - Dole_2054 - hypothetical protein 2049 53.91 0 2505311..2506078 + 255 158522066 - Dole_2055 - DNA uptake lipoprotein-like protein 2050 55.73 0 2506165..2506356 + 63 158522067 - Dole_2056 - ribosomal protein L28 2051 56.86 0 2506452..2508602 - 716 158522068 - Dole_2057 - (p)ppGpp synthetase I, SpoT/RelA 2052 60.18 0 2508682..2510208 - 508 158522069 - Dole_2058 - prolyl-tRNA synthetase 2053 59.65 0 2510208..2511305 - 365 158522070 - Dole_2059 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 2054 60.54 0 2511579..2512508 + 309 158522071 - Dole_2060 - periplasmic binding protein 2055 61.93 0 2512505..2513518 + 337 158522072 - Dole_2061 - transport system permease protein 2056 60.92 0 2513515..2514315 + 266 158522073 - Dole_2062 - ABC transporter-related protein 2057 56.65 0 2514490..2515647 + 385 158522074 - Dole_2063 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2058 58.90 0 2515662..2516729 + 355 158522075 - Dole_2064 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2059 61.36 0 2517238..2518368 + 376 158522076 - Dole_2065 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2060 54.23 0 2518386..2518586 - 66 158522077 - Dole_2066 - hypothetical protein 2061 58.97 0 2518593..2519528 - 311 158522078 - Dole_2067 - hypothetical protein 2062 60.14 0 2519625..2521814 - 729 158522079 - Dole_2068 - ABC-type transport system protein involved in gliding motility auxiliary component-like protein 2063 59.01 0 2521827..2522531 - 234 158522080 - Dole_2069 - ABC-2 type transporter 2064 62.04 0 2522533..2523483 - 316 158522081 - Dole_2070 - ABC transporter-related protein 2065 59.71 0 2523794..2524684 + 296 158522082 - Dole_2071 - hypothetical protein 2066 56.08 0 2524923..2525555 - 210 158522083 - Dole_2072 - beta-lactamase domain-containing protein 2067 56.70 0 2525586..2525846 - 86 158522084 - Dole_2073 - hypothetical protein 2068 59.40 0 2525989..2527365 - 458 158522085 - Dole_2074 - tryptophan synthase subunit beta 2069 55.48 0 2527369..2527833 - 154 158522086 - Dole_2075 - NusB antitermination factor 2070 60.34 0 2527840..2528313 - 157 158522087 - Dole_2076 - 6,7-dimethyl-8-ribityllumazine synthase 2071 59.42 0 2528432..2529646 - 404 158522088 - Dole_2077 - 3,4-dihydroxy-2-butanone 4-phosphate synthase 2072 60.22 0 2529708..2530358 - 216 158522089 - Dole_2078 - riboflavin synthase, alpha subunit 2073 61.72 0 2530358..2531449 - 363 158522090 - Dole_2079 - riboflavin biosynthesis protein RibD 2074 55.92 0 2531521..2531976 - 151 158522091 - Dole_2080 - ATP-cone domain-containing protein 2075 60.26 0 2531992..2532459 - 155 158522092 - Dole_2081 - CMP/dCMP deaminase zinc-binding 2076 62.54 +1 2532452..2533711 - 419 158522093 - Dole_2082 - glycine hydroxymethyltransferase 2077 53.68 0 2533770..2534000 - 76 158522094 - Dole_2083 - acyl carrier protein 2078 64.28 +1 2534129..2534881 - 250 158522095 - Dole_2084 - 3-oxoacyl-(acyl-carrier-protein) reductase 2079 60.87 0 2534925..2535062 - 45 158522096 - Dole_2085 - ribosomal protein L32 2080 61.14 0 2535280..2535840 - 186 158522097 - Dole_2086 - hypothetical protein 2081 59.37 0 2535879..2537207 - 442 158522098 - Dole_2087 - hypothetical protein 2082 43.04 -2 2537460..2538602 - 380 158522099 - Dole_2088 - hypothetical protein 2083 45.07 -1 2538615..2539040 - 141 158522100 - Dole_2089 - hypothetical protein 2084 46.29 -1 2539037..2540209 - 390 158522101 - Dole_2090 - hypothetical protein 2085 41.40 -2 2540420..2541250 + 276 158522102 - Dole_2091 - hypothetical protein 2086 58.33 0 2541255..2541926 - 223 158522103 - Dole_2092 - DNA repair protein RadC 2087 44.07 -2 2542111..2543544 - 477 158522104 - Dole_2093 - restriction modification system DNA specificity subunit 2088 51.80 0 2543541..2544569 - 342 158522105 - Dole_2094 - hypothetical protein 2089 56.50 0 2544566..2546011 - 481 158522106 - Dole_2095 - N-6 DNA methylase 2090 51.87 0 2546043..2548712 - 889 158522107 - Dole_2096 - type III restriction protein res subunit 2091 44.18 -2 2548855..2549721 - 288 158522108 - Dole_2097 - UbiA prenyltransferase 56.47 MEAN 5.93 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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