IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
152	 54.17	0	166507..166794	-	95	158520169	-	Dole_0152	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
153	 59.33	0	166953..168641	+	562	158520170	-	Dole_0153	-	hypothetical protein
154	 55.08	0	168653..169213	-	186	158520171	-	Dole_0154	-	hypothetical protein
155	 58.48	0	169729..172134	+	801	158520172	-	Dole_0155	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
156	 61.60	0	172147..173331	+	394	158520173	-	Dole_0156	-	acetyl-CoA acetyltransferase
157	 61.77	0	173580..174560	+	326	158520174	-	Dole_0157	-	NAD-dependent epimerase/dehydratase
158	 54.08	0	174557..175009	+	150	158520175	-	Dole_0158	-	hypothetical protein
159	 50.21	-1	175179..175652	+	157	158520176	-	Dole_0159	-	UspA domain-containing protein
160	 54.81	0	175844..176248	+	134	158520177	-	Dole_0160	-	UspA domain-containing protein
161	 57.88	0	176276..177982	-	568	158520178	-	Dole_0161	-	TrkA domain-containing protein
162	 58.16	0	178152..179702	+	516	158520179	-	Dole_0162	-	CoA-binding domain-containing protein
163	 61.10	0	179699..181978	+	759	158520180	-	Dole_0163	-	RNA-binding S1 domain-containing protein
164	 45.98	-1	182182..184158	+	658	158520181	-	Dole_0164	-	AMP-dependent synthetase and ligase
165	 58.56	0	184295..184627	+	110	158520182	-	Dole_0165	-	TfoX domain-containing protein
166	 54.03	0	184693..186132	+	479	158520183	-	Dole_0166	-	amidase
167	 40.19	-2	186392..187033	-	213	158520184	-	Dole_0167	-	TetR family transcriptional regulator
168	 44.96	-1	187230..188261	+	343	158520185	-	Dole_0168	-	enoyl-CoA hydratase/isomerase
169	 53.79	0	188285..189154	+	289	158520186	-	Dole_0169	-	short-chain dehydrogenase/reductase SDR
170	 49.24	-1	189216..189542	+	108	158520187	-	Dole_0170	-	DNA-binding protein
171	 59.32	0	189575..191494	-	639	158520188	-	Dole_0171	-	ABC transporter-related protein
172	 60.74	0	191515..192492	-	325	158520189	-	Dole_0172	-	alpha/beta hydrolase fold
173	 57.45	0	192500..193378	-	292	158520190	-	Dole_0173	-	radical SAM domain-containing protein
174	 57.09	0	193732..194274	+	180	158520191	-	Dole_0174	-	peptidylprolyl isomerase FKBP-type
175	 53.51	0	194367..195065	-	232	158520192	-	Dole_0175	-	TetR family transcriptional regulator
176	 57.48	0	195263..196111	+	282	158520193	-	Dole_0176	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
177	 60.76	0	196133..197182	+	349	158520194	-	Dole_0177	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
178	 56.68	0	197194..198024	+	276	158520195	-	Dole_0178	-	hypothetical protein
179	 55.17	0	198054..198575	+	173	158520196	-	Dole_0179	-	hypothetical protein
180	 48.23	-1	198631..199026	+	131	158520197	-	Dole_0180	-	endoribonuclease L-PSP
181	 56.18	0	199141..200208	+	355	158520198	-	Dole_0181	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
182	 55.32	0	200407..201270	+	287	158520199	-	Dole_0182	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
183	 46.86	-1	201532..202692	+	386	158520200	-	Dole_0183	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
184	 47.22	-1	202839..203846	+	335	158520201	-	Dole_0184	-	TetR family transcriptional regulator
185	 57.80	0	203920..204675	+	251	158520202	-	Dole_0185	-	hypothetical protein
186	 53.25	0	204860..205612	-	250	158520203	-	Dole_0186	-	MerR family transcriptional regulator
187	 58.11	0	205948..206940	+	330	158520204	-	Dole_0187	-	molybdenum cofactor biosynthesis protein A
188	 54.90	0	207128..207331	+	67	158520205	-	Dole_0188	-	twin arginine-targeting protein translocase
189	 51.85	0	207371..208126	-	251	158520206	-	Dole_0189	-	MerR family transcriptional regulator
190	 58.07	0	208138..208707	-	189	158520207	-	Dole_0190	-	formylmethanofuran dehydrogenase subunit E region
191	 54.90	0	208961..209368	+	135	158520208	-	Dole_0191	-	hypothetical protein
192	 57.73	0	209441..210022	+	193	158520209	-	Dole_0192	-	Rieske (2Fe-2S) domain-containing protein
193	 61.48	0	210022..210387	+	121	158520210	-	Dole_0193	-	hypothetical protein
194	 58.28	0	210524..213505	+	993	158520211	-	Dole_0194	-	molybdopterin oxidoreductase
195	 55.26	0	213550..214215	+	221	158520212	-	Dole_0195	-	gamma-subunit of ethylbenzene dehydrogenase
196	 59.91	0	214273..215442	+	389	158520213	-	Dole_0196	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
197	 56.13	0	215484..216233	+	249	158520214	-	Dole_0197	-	delta-subunit of ethylbenzene dehydrogenase
198	 59.13	0	216247..217002	+	251	158520215	-	Dole_0198	-	cytochrome b/b6 domain-containing protein
199	 55.78	0	217025..217768	+	247	158520216	-	Dole_0199	-	hypothetical protein
200	 56.90	0	217765..219996	+	743	158520217	-	Dole_0200	-	cytochrome c class I
201	 58.64	0	220159..222813	+	884	158520218	-	Dole_0201	-	carbohydrate-binding and sugar hydrolysis
202	 63.65	+1	222953..224179	+	408	158520219	-	Dole_0202	-	molybdenum cofactor synthesis domain-containing protein
203	 57.34	0	224226..225737	+	503	158520220	-	Dole_0203	-	acyl-CoA dehydrogenase domain-containing protein
204	 61.81	0	225801..226913	+	370	158520221	-	Dole_0204	-	acyl-CoA dehydrogenase domain-containing protein
205	 60.65	0	227044..228987	+	647	158520222	-	Dole_0205	-	methyl-accepting chemotaxis sensory transducer
206	 60.42	0	229297..229776	+	159	158520223	-	Dole_0206	-	molybdopterin-guanine dinucleotide biosynthesis protein B
207	 56.20	0	229858..230220	+	120	158520224	-	Dole_0207	-	ModE family transcriptional regulator
208	 50.00	-1	230312..231187	+	291	158520225	-	Dole_0208	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
209	 49.29	-1	231184..231960	+	258	158520226	-	Dole_0209	-	binding-protein-dependent transport systems inner membrane component
210	 51.47	0	231957..233048	+	363	158520227	-	Dole_0210	-	ABC transporter-related protein
211	 44.44	-2	233101..233361	-	86	158520228	-	Dole_0211	-	hypothetical protein
212	 60.69	0	233500..234420	+	306	158520229	-	Dole_0212	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
213	 60.61	0	234410..235168	+	252	158520230	-	Dole_0213	-	binding-protein-dependent transport systems inner membrane component
214	 57.88	0	235165..236256	+	363	158520231	-	Dole_0214	-	ABC transporter-related protein
215	 60.49	0	236378..237106	+	242	158520232	-	Dole_0215	-	hypothetical protein
216	 50.41	-1	237312..237557	+	81	158520233	-	Dole_0216	-	hypothetical protein
217	 56.55	0	237669..238706	-	345	158520234	-	Dole_0217	-	lipid-binding START domain-containing protein
218	 59.73	0	238924..239370	+	148	158520235	-	Dole_0218	-	hypothetical protein
219	 57.18	0	239438..241240	+	600	158520236	-	Dole_0219	-	radical SAM domain-containing protein
220	 51.79	0	241252..241419	+	55	158520237	-	Dole_0220	-	hypothetical protein
221	 59.52	0	241716..245924	+	1402	158520238	-	Dole_0221	-	pyruvate phosphate dikinase PEP/pyruvate-binding
222	 60.13	0	246005..247258	+	417	158520239	-	Dole_0222	-	glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
223	 58.59	0	247351..247746	+	131	158520240	-	Dole_0223	-	response regulator receiver protein
224	 60.97	0	247845..249020	-	391	158520241	-	Dole_0224	-	acetyl-CoA acetyltransferase
225	 56.89	0	249046..250896	-	616	158520242	-	Dole_0225	-	AMP-dependent synthetase and ligase
226	 53.83	0	251032..251592	-	186	158520243	-	Dole_0226	-	sterol-binding domain-containing protein
227	 42.17	-2	251659..251907	+	82	158520244	-	Dole_0227	-	hypothetical protein
228	 48.54	-1	251955..252572	+	205	158520245	-	Dole_0228	-	TetR family transcriptional regulator
229	 61.73	0	252624..253778	-	384	158520246	-	Dole_0229	-	DNA-directed DNA polymerase
230	 62.04	0	253885..254403	-	172	158520247	-	Dole_0230	-	hypothetical protein
231	 61.70	0	254396..255181	-	261	158520248	-	Dole_0231	-	hypothetical protein
232	 58.23	0	255885..256868	+	327	158520249	-	Dole_0232	-	hypothetical protein
233	 50.79	0	256865..257626	+	253	158520250	-	Dole_0233	-	hypothetical protein
234	 56.08	0	258242..258874	+	210	158520251	-	Dole_0234	-	LexA family transcriptional regulator
235	 60.17	0	258905..259720	+	271	158520252	-	Dole_0235	-	hypothetical protein
236	 64.26	+1	259717..260922	+	401	158520253	-	Dole_0236	-	DNA-directed DNA polymerase
237	 60.86	0	260928..263939	+	1003	158520254	-	Dole_0237	-	DNA polymerase III, alpha subunit
238	 36.38	-2	264050..265327	+	425	158520255	-	Dole_0238	-	hypothetical protein
239	 55.89	0	265545..266537	-	330	158520256	-	Dole_0239	-	transcriptional regulator-like protein
240	 52.30	0	266668..268929	+	753	158520257	-	Dole_0240	-	ATPase central domain-containing protein
241	 57.48	0	269095..270585	+	496	158520258	-	Dole_0241	-	hypothetical protein
242	 35.82	-2	270853..271938	-	361	158520259	-	Dole_0242	-	hypothetical protein
243	 49.44	-1	272158..273219	-	353	158520260	-	Dole_0243	-	hypothetical protein
244	 52.23	0	273252..274013	-	253	158520261	-	Dole_0244	-	hypothetical protein
245	 55.18	0	274010..277126	-	1038	158520262	-	Dole_0245	-	HsdR family type I site-specific deoxyribonuclease
246	 56.33	0	277119..279092	-	657	158520263	-	Dole_0246	-	hypothetical protein
247	 42.38	-2	279465..281609	-	714	158520264	-	Dole_0247	-	hypothetical protein
248	 43.56	-2	281606..283453	-	615	158520265	-	Dole_0248	-	hypothetical protein
249	 49.41	-1	283450..284631	-	393	158520266	-	Dole_0249	-	restriction modification system DNA specificity subunit
250	 54.17	0	284628..285779	-	383	158520267	-	Dole_0250	-	putative transcriptional regulator
251	 56.28	0	285776..288202	-	808	158520268	-	Dole_0251	-	type I restriction-modification system, M subunit
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.