IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1941	 63.00	+1	2356890..2357954	-	354	158521958	-	Dole_1947	-	chorismate synthase
1942	 61.77	0	2358243..2358671	-	142	158521959	-	Dole_1948	-	hypothetical protein
1943	 61.64	0	2358751..2360022	-	423	158521960	-	Dole_1949	-	3-phosphoshikimate 1-carboxyvinyltransferase
1944	 60.67	0	2360036..2361136	-	366	158521961	-	Dole_1950	-	prephenate dehydratase
1945	 60.83	0	2361150..2362142	-	330	158521962	-	Dole_1951	-	3-dehydroquinate synthase
1946	 60.52	0	2362160..2362972	-	270	158521963	-	Dole_1952	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1947	 61.74	0	2363496..2366375	-	959	158521964	-	Dole_1953	-	DEAD/DEAH box helicase domain-containing protein
1948	 57.28	0	2366482..2366694	+	70	158521965	-	Dole_1954	-	hypothetical protein
1949	 55.61	0	2366891..2367496	+	201	158521966	-	Dole_1955	-	hypothetical protein
1950	 57.72	0	2367740..2368600	-	286	158521967	-	Dole_1956	-	hypothetical protein
1951	 61.87	0	2368631..2369047	-	138	158521968	-	Dole_1957	-	hypothetical protein
1952	 60.36	0	2369216..2369929	-	237	158521969	-	Dole_1958	-	enoyl-CoA hydratase/isomerase
1953	 49.94	-1	2370322..2371098	+	258	158521970	-	Dole_1959	-	glucose-1-phosphate cytidylyltransferase
1954	 58.49	0	2371095..2372183	+	362	158521971	-	Dole_1960	-	CDP-glucose 4,6-dehydratase
1955	 57.12	0	2372171..2372746	+	191	158521972	-	Dole_1961	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1956	 56.05	0	2372743..2373966	+	407	158521973	-	Dole_1962	-	C-methyltransferase
1957	 52.35	0	2373963..2374814	+	283	158521974	-	Dole_1963	-	NAD-dependent epimerase/dehydratase
1958	 49.76	-1	2374804..2375862	+	352	158521975	-	Dole_1964	-	methyltransferase type 11
1959	 52.62	0	2375910..2376692	+	260	158521976	-	Dole_1965	-	cephalosporin hydroxylase
1960	 54.86	0	2376697..2378220	+	507	158521977	-	Dole_1966	-	polysaccharide biosynthesis protein
1961	 47.73	-1	2378263..2379165	+	300	158521978	-	Dole_1967	-	glycosyl transferase family protein
1962	 52.73	0	2379419..2380372	+	317	158521979	-	Dole_1968	-	NAD-dependent epimerase/dehydratase
1963	 48.44	-1	2380431..2381549	-	372	158521980	-	Dole_1969	-	glycosyl transferase group 1
1964	 52.04	0	2381597..2382574	-	325	158521981	-	Dole_1970	-	glycosyl transferase family protein
1965	 56.42	0	2382589..2383632	-	347	158521982	-	Dole_1971	-	glycosyl transferase family protein
1966	 54.78	0	2384026..2385489	-	487	158521983	-	Dole_1972	-	hypothetical protein
1967	 61.58	0	2385796..2387526	-	576	158521984	-	Dole_1973	-	AMP-dependent synthetase and ligase
1968	 62.62	+1	2387523..2388560	-	345	158521985	-	Dole_1974	-	histone deacetylase superfamily protein
1969	 59.64	0	2388720..2390684	-	654	158521986	-	Dole_1975	-	acetate--CoA ligase
1970	 60.09	0	2390703..2392604	-	633	158521987	-	Dole_1976	-	acetyl-CoA hydrolase/transferase
1971	 57.39	0	2392862..2393659	+	265	158521988	-	Dole_1977	-	response regulator receiver protein
1972	 59.03	0	2393733..2394740	-	335	158521989	-	Dole_1978	-	hypothetical protein
1973	 60.30	0	2394859..2395800	-	313	158521990	-	Dole_1979	-	2-dehydropantoate 2-reductase
1974	 54.78	0	2395843..2396742	-	299	158521991	-	Dole_1980	-	signal peptide peptidase SppA, 36K type
1975	 56.09	0	2396865..2398679	-	604	158521992	-	Dole_1981	-	ribosomal protein S1
1976	 62.18	0	2398785..2399453	-	222	158521993	-	Dole_1982	-	cytidylate kinase
1977	 56.57	0	2399450..2400538	-	362	158521994	-	Dole_1983	-	histidinol-phosphate aminotransferase
1978	 59.85	0	2400673..2401845	+	390	158521995	-	Dole_1984	-	hypothetical protein
1979	 57.58	0	2401874..2402566	+	230	158521996	-	Dole_1985	-	ribonuclease H
1980	 51.85	0	2402627..2402896	-	89	158521997	-	Dole_1986	-	hypothetical protein
1981	 59.36	0	2403171..2404019	+	282	158521998	-	Dole_1987	-	hypothetical protein
1982	 60.14	0	2404484..2405449	-	321	158521999	-	Dole_1988	-	low molecular weight phosphotyrosine protein phosphatase
1983	 59.21	0	2405570..2406226	-	218	158522000	-	Dole_1989	-	methyltransferase type 11
1984	 60.69	0	2406213..2406848	-	211	158522001	-	Dole_1990	-	hypothetical protein
1985	 53.40	0	2406997..2409642	+	881	158522002	-	Dole_1991	-	glycerol-3-phosphate O-acyltransferase
1986	 55.27	0	2409639..2411384	+	581	158522003	-	Dole_1992	-	aminoglycoside phosphotransferase
1987	 52.70	0	2411498..2411905	+	135	158522004	-	Dole_1993	-	TM2 domain-containing protein
1988	 59.38	0	2411978..2415943	-	1321	158522005	-	Dole_1994	-	hypothetical protein
1989	 58.44	0	2416217..2417383	+	388	158522006	-	Dole_1995	-	OmpA/MotB domain-containing protein
1990	 51.02	0	2417784..2418224	+	146	158522007	-	Dole_1996	-	hypothetical protein
1991	 55.35	0	2418287..2419567	+	426	158522008	-	Dole_1997	-	hypothetical protein
1992	 52.38	0	2419640..2420080	+	146	158522009	-	Dole_1998	-	hypothetical protein
1993	 55.61	0	2420156..2421421	+	421	158522010	-	Dole_1999	-	hypothetical protein
1994	 60.06	0	2421552..2423231	+	559	158522011	-	Dole_2000	-	methyl-accepting chemotaxis sensory transducer
1995	 59.29	0	2423382..2424683	-	433	158522012	-	Dole_2001	-	TRAP dicarboxylate transporter, DctM subunit
1996	 59.30	0	2424680..2425168	-	162	158522013	-	Dole_2002	-	tripartite ATP-independent periplasmic transporter DctQ
1997	 60.13	0	2425210..2426280	-	356	158522014	-	Dole_2003	-	TRAP dicarboxylate transporter- DctP subunit
1998	 56.59	0	2426708..2428612	+	634	158522015	-	Dole_2004	-	multi-sensor signal transduction histidine kinase
1999	 48.68	-1	2428854..2430287	-	477	158522016	-	Dole_2005	-	peptidase C14 caspase catalytic subunit p20
2000	 56.96	0	2430943..2432034	+	363	158522017	-	Dole_2006	-	hypothetical protein
2001	 61.24	0	2432089..2433102	+	337	158522018	-	Dole_2007	-	hypothetical protein
2002	 62.75	+1	2433196..2434242	+	348	158522019	-	Dole_2008	-	3-oxoacyl-(acyl carrier protein) synthase III
2003	 57.00	0	2434242..2435141	+	299	158522020	-	Dole_2009	-	alpha/beta hydrolase fold
2004	 60.06	0	2435170..2436864	+	564	158522021	-	Dole_2010	-	peptide synthase
2005	 61.03	0	2436867..2437859	+	330	158522022	-	Dole_2011	-	3-beta hydroxysteroid dehydrogenase/isomerase
2006	 58.58	0	2437967..2438572	-	201	158522023	-	Dole_2012	-	peptidoglycan-binding LysM
2007	 57.83	0	2438746..2439978	+	410	158522024	-	Dole_2013	-	peptidase M29 aminopeptidase II
2008	 59.03	0	2440159..2443143	-	994	158522025	-	Dole_2014	-	peptidase C25 gingipain
2009	 58.29	0	2443288..2444493	-	401	158522026	-	Dole_2015	-	mannose-6-phosphate isomerase, class I
2010	 59.17	0	2444654..2446975	-	773	158522027	-	Dole_2016	-	SH3 type 3 domain-containing protein
2011	 56.25	0	2447031..2447894	-	287	158522028	-	Dole_2017	-	hypothetical protein
2012	 46.77	-1	2448081..2448281	-	66	158522029	-	Dole_2018	-	cold-shock DNA-binding domain-containing protein
2013	 56.24	0	2448470..2449198	-	242	158522030	-	Dole_2019	-	ABC transporter-related protein
2014	 56.39	0	2449191..2449949	-	252	158522031	-	Dole_2020	-	cobalt ABC transporter, inner membrane subunit CbiQ
2015	 60.80	0	2449957..2450655	-	232	158522032	-	Dole_2021	-	hypothetical protein
2016	 58.25	0	2450679..2451272	-	197	158522033	-	Dole_2022	-	cobalamin (vitamin B12) biosynthesis CbiM protein
2017	 55.30	0	2451296..2452069	-	257	158522034	-	Dole_2023	-	hypothetical protein
2018	 62.23	0	2452252..2453580	-	442	158522035	-	Dole_2024	-	phosphoglucosamine mutase
2019	 57.01	0	2453577..2454860	-	427	158522036	-	Dole_2025	-	UDP-N-acetylglucosamine pyrophosphorylase
2020	 55.71	0	2455026..2456732	+	568	158522037	-	Dole_2026	-	metal dependent phosphohydrolase
2021	 57.21	0	2456803..2457204	-	133	158522038	-	Dole_2027	-	hypothetical protein
2022	 55.04	0	2457501..2458274	-	257	158522039	-	Dole_2028	-	hypothetical protein
2023	 60.39	0	2458610..2459899	-	429	158522040	-	Dole_2029	-	adenylosuccinate synthetase
2024	 58.96	0	2459928..2460368	-	146	158522041	-	Dole_2030	-	CMP/dCMP deaminase zinc-binding
2025	 61.24	0	2460389..2461825	-	478	158522042	-	Dole_2031	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
2026	 61.50	0	2461822..2462673	-	283	158522043	-	Dole_2032	-	3'(2'),5'-bisphosphate nucleotidase
2027	 58.55	0	2462998..2463909	-	303	158522044	-	Dole_2033	-	methenyltetrahydrofolate cyclohydrolase
2028	 61.16	0	2463999..2465051	-	350	158522045	-	Dole_2034	-	N-acetyl-gamma-glutamyl-phosphate reductase
2029	 59.18	0	2465857..2467044	+	395	158522046	-	Dole_2035	-	putative RNA methylase
2030	 62.19	0	2467348..2469021	+	557	158522047	-	Dole_2036	-	dihydroxy-acid dehydratase
2031	 59.59	0	2469037..2470731	+	564	158522048	-	Dole_2037	-	acetolactate synthase, large subunit, biosynthetic type
2032	 60.28	0	2470747..2471247	+	166	158522049	-	Dole_2038	-	acetolactate synthase, small subunit
2033	 60.15	0	2471286..2472344	+	352	158522050	-	Dole_2039	-	ketol-acid reductoisomerase
2034	 59.30	0	2472529..2474157	+	542	158522051	-	Dole_2040	-	putative alpha-isopropylmalate/homocitrate synthase family transferase
2035	 60.87	0	2474166..2475701	+	511	158522052	-	Dole_2041	-	2-isopropylmalate synthase
2036	 57.61	0	2475751..2476269	-	172	158522053	-	Dole_2042	-	hypothetical protein
2037	 57.51	0	2476378..2482473	-	2031	158522054	-	Dole_2043	-	parallel beta-helix repeat-containing protein
2038	 26.61	-2	2483012..2483770	-	252	158522055	-	Dole_2044	-	hypothetical protein
2039	 51.42	0	2483895..2486117	-	740	158522056	-	Dole_2045	-	YD repeat-containing protein
2040	 54.73	0	2486741..2489470	-	909	158522057	-	Dole_2046	-	YD repeat-containing protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.