IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1857	 54.58	0	2255039..2255311	-	90	158521874	-	Dole_1863	-	hypothetical protein
1858	 55.34	0	2255312..2255620	-	102	158521875	-	Dole_1864	-	hypothetical protein
1859	 59.09	0	2255651..2258251	-	866	158521876	-	Dole_1865	-	pyruvate phosphate dikinase PEP/pyruvate-binding
1860	 60.34	0	2258270..2259202	-	310	158521877	-	Dole_1866	-	UspA domain-containing protein
1861	 58.33	0	2259399..2259650	+	83	158521878	-	Dole_1867	-	hypothetical protein
1862	 53.26	0	2259662..2261824	+	720	158521879	-	Dole_1868	-	glycosyl transferase family protein
1863	 49.32	-1	2261964..2263439	+	491	158521880	-	Dole_1869	-	hypothetical protein
1864	 59.74	0	2263492..2265267	+	591	158521881	-	Dole_1870	-	beta-lactamase domain-containing protein
1865	 45.30	-1	2265396..2266139	-	247	158521882	-	Dole_1871	-	hypothetical protein
1866	 47.12	-1	2266280..2267113	-	277	158521883	-	Dole_1872	-	hypothetical protein
1867	 56.69	0	2267442..2269535	-	697	158521884	-	Dole_1873	-	radical SAM domain-containing protein
1868	 58.77	0	2269958..2271046	+	362	158521885	-	Dole_1874	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1869	 48.82	-1	2271324..2272847	-	507	158521886	-	Dole_1875	-	polymorphic membrane protein Chlamydia
1870	 62.13	0	2273248..2275494	-	748	158521887	-	Dole_1876	-	heavy metal translocating P-type ATPase
1871	 57.84	0	2275523..2275726	-	67	158521888	-	Dole_1877	-	heavy metal transport/detoxification protein
1872	 54.95	0	2276222..2277049	+	275	158521889	-	Dole_1878	-	cyclic nucleotide-binding protein
1873	 56.44	0	2277060..2278751	-	563	158521890	-	Dole_1879	-	hypothetical protein
1874	 58.80	0	2278858..2279709	-	283	158521891	-	Dole_1880	-	apurinic endonuclease Apn1
1875	 54.93	0	2279890..2280630	+	246	158521892	-	Dole_1881	-	1-acylglycerol-3-phosphate O-acyltransferase
1876	 55.39	0	2280650..2281057	-	135	158521893	-	Dole_1882	-	type IV pilus assembly PilZ
1877	 60.27	0	2281320..2282210	+	296	158521894	-	Dole_1883	-	6-phosphogluconate dehydrogenase NAD-binding
1878	 58.79	0	2282575..2283717	-	380	158521895	-	Dole_1884	-	DegT/DnrJ/EryC1/StrS aminotransferase
1879	 59.85	0	2283714..2287262	-	1182	158521896	-	Dole_1885	-	DNA polymerase III, alpha subunit
1880	 60.01	0	2287472..2288929	-	485	158521897	-	Dole_1886	-	inosine-5'-monophosphate dehydrogenase
1881	 39.29	-2	2288963..2289214	-	83	158521898	-	Dole_1887	-	hypothetical protein
1882	 55.17	0	2289261..2289869	+	202	158521899	-	Dole_1888	-	Sua5/YciO/YrdC/YwlC family protein
1883	 62.88	+1	2289945..2291504	+	519	158521900	-	Dole_1889	-	propionyl-CoA carboxylase
1884	 62.81	+1	2291737..2293059	+	440	158521901	-	Dole_1890	-	radical SAM domain-containing protein
1885	 63.07	+1	2293207..2294790	-	527	158521902	-	Dole_1891	-	GCN5-related N-acetyltransferase
1886	 63.33	+1	2294815..2295324	-	169	158521903	-	Dole_1892	-	hypothetical protein
1887	 62.71	+1	2295327..2296691	-	454	158521904	-	Dole_1893	-	lysine 2,3-aminomutase YodO family protein
1888	 62.75	+1	2296907..2297596	-	229	158521905	-	Dole_1894	-	hypothetical protein
1889	 63.57	+1	2297964..2300060	+	698	158521906	-	Dole_1895	-	short chain dehydrogenase
1890	 50.78	0	2300069..2300452	+	127	158521907	-	Dole_1896	-	glyoxalase/bleomycin resistance protein/dioxygenase
1891	 60.34	0	2300467..2301351	+	294	158521908	-	Dole_1897	-	aldolase
1892	 47.85	-1	2301752..2301937	+	61	158521909	-	Dole_1898	-	hypothetical protein
1893	 52.83	0	2302880..2304151	-	423	158521910	-	Dole_1899	-	YD repeat-containing protein
1894	 59.04	0	2304331..2306100	-	589	158521911	-	Dole_1900	-	D-aminoacylase domain-containing protein
1895	 42.19	-2	2306382..2306618	+	78	158521912	-	Dole_1901	-	prevent-host-death family protein
1896	 41.55	-2	2306602..2307015	+	137	158521913	-	Dole_1902	-	hypothetical protein
1897	 56.89	0	2307144..2307992	+	282	158521914	-	Dole_1903	-	methyltransferase type 11
1898	 57.52	0	2308147..2308452	+	101	158521915	-	Dole_1904	-	hypothetical protein
1899	 59.07	0	2308491..2309030	-	179	158521916	-	Dole_1905	-	NUDIX hydrolase
1900	 62.36	0	2309027..2309839	-	270	158521917	-	Dole_1906	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1901	 63.33	+1	2309943..2310782	-	279	158521918	-	Dole_1907	-	phosphoribosyltransferase
1902	 62.64	+1	2310787..2312028	-	413	158521919	-	Dole_1908	-	isocitrate dehydrogenase, NADP-dependent
1903	 64.07	+1	2312343..2313113	-	256	158521920	-	Dole_1909	-	RNA methyltransferase
1904	 61.14	0	2313110..2313742	-	210	158521921	-	Dole_1910	-	guanylate kinase
1905	 54.76	0	2313755..2314048	-	97	158521922	-	Dole_1911	-	hypothetical protein
1906	 59.55	0	2314223..2315107	-	294	158521923	-	Dole_1912	-	hypothetical protein
1907	 56.85	0	2315263..2315802	-	179	158521924	-	Dole_1913	-	GTP-binding protein
1908	 47.46	-1	2315811..2315987	-	58	158521925	-	Dole_1914	-	hypothetical protein
1909	 57.20	0	2316229..2317041	-	270	158521926	-	Dole_1915	-	Fe-S cluster domain-containing protein
1910	 59.94	0	2317324..2318394	-	356	158521927	-	Dole_1916	-	hypothetical protein
1911	 60.27	0	2318421..2319248	-	275	158521928	-	Dole_1917	-	short chain dehydrogenase
1912	 60.08	0	2319245..2320003	-	252	158521929	-	Dole_1918	-	short chain dehydrogenase
1913	 58.48	0	2320189..2321067	-	292	158521930	-	Dole_1919	-	amidohydrolase 2
1914	 53.43	0	2321203..2321844	-	213	158521931	-	Dole_1920	-	TetR family transcriptional regulator
1915	 59.43	0	2321973..2323175	-	400	158521932	-	Dole_1921	-	acyl-CoA dehydrogenase domain-containing protein
1916	 56.82	0	2323381..2324091	-	236	158521933	-	Dole_1922	-	phosphoglycerate mutase
1917	 61.90	0	2324372..2325148	+	258	158521934	-	Dole_1923	-	electron transfer flavoprotein alpha/beta-subunit
1918	 62.80	+1	2325157..2326140	+	327	158521935	-	Dole_1924	-	electron transfer flavoprotein alpha subunit
1919	 57.95	0	2326522..2327358	+	278	158521936	-	Dole_1925	-	phosphate binding protein
1920	 58.60	0	2327470..2328399	+	309	158521937	-	Dole_1926	-	phosphate ABC transporter, inner membrane subunit PstC
1921	 58.31	0	2328409..2329293	+	294	158521938	-	Dole_1927	-	phosphate ABC transporter, inner membrane subunit PstA
1922	 55.56	0	2329307..2330062	+	251	158521939	-	Dole_1928	-	phosphate ABC transporter, ATPase subunit
1923	 53.60	0	2330249..2330929	+	226	158521940	-	Dole_1929	-	phosphate uptake regulator, PhoU
1924	 56.55	0	2330942..2331643	+	233	158521941	-	Dole_1930	-	two component transcriptional regulator
1925	 55.80	0	2331844..2333619	+	591	158521942	-	Dole_1931	-	PAS/PAC sensor signal transduction histidine kinase
1926	 56.99	0	2333835..2336036	+	733	158521943	-	Dole_1932	-	esterase/lipase-like protein
1927	 56.40	0	2336052..2336762	-	236	158521944	-	Dole_1933	-	hypothetical protein
1928	 59.65	0	2336764..2338845	-	693	158521945	-	Dole_1934	-	elongation factor G
1929	 61.54	0	2339034..2339462	-	142	158521946	-	Dole_1935	-	NUDIX hydrolase
1930	 56.90	0	2339465..2340580	-	371	158521947	-	Dole_1936	-	DNA repair photolyase-like protein
1931	 60.41	0	2340666..2341304	+	212	158521948	-	Dole_1937	-	beta-lactamase domain-containing protein
1932	 52.38	0	2341462..2342196	+	244	158521949	-	Dole_1938	-	response regulator receiver protein
1933	 48.32	-1	2342548..2343321	-	257	158521950	-	Dole_1939	-	TetR family transcriptional regulator
1934	 58.25	0	2343735..2345303	+	522	158521951	-	Dole_1940	-	SH3 type 3 domain-containing protein
1935	 55.60	0	2345450..2347726	+	758	158521952	-	Dole_1941	-	hypothetical protein
1936	 51.84	0	2347844..2348605	-	253	158521953	-	Dole_1942	-	TetR family transcriptional regulator
1937	 54.50	0	2349075..2353184	+	1369	158521954	-	Dole_1943	-	hypothetical protein
1938	 54.99	0	2353270..2354613	+	447	158521955	-	Dole_1944	-	membrane protein involved in aromatic hydrocarbon degradation
1939	 38.01	-2	2355165..2355698	+	177	158521956	-	Dole_1945	-	hypothetical protein
1940	 59.76	0	2356063..2356902	-	279	158521957	-	Dole_1946	-	prephenate dehydrogenase
1941	 63.00	+1	2356890..2357954	-	354	158521958	-	Dole_1947	-	chorismate synthase
1942	 61.77	0	2358243..2358671	-	142	158521959	-	Dole_1948	-	hypothetical protein
1943	 61.64	0	2358751..2360022	-	423	158521960	-	Dole_1949	-	3-phosphoshikimate 1-carboxyvinyltransferase
1944	 60.67	0	2360036..2361136	-	366	158521961	-	Dole_1950	-	prephenate dehydratase
1945	 60.83	0	2361150..2362142	-	330	158521962	-	Dole_1951	-	3-dehydroquinate synthase
1946	 60.52	0	2362160..2362972	-	270	158521963	-	Dole_1952	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1947	 61.74	0	2363496..2366375	-	959	158521964	-	Dole_1953	-	DEAD/DEAH box helicase domain-containing protein
1948	 57.28	0	2366482..2366694	+	70	158521965	-	Dole_1954	-	hypothetical protein
1949	 55.61	0	2366891..2367496	+	201	158521966	-	Dole_1955	-	hypothetical protein
1950	 57.72	0	2367740..2368600	-	286	158521967	-	Dole_1956	-	hypothetical protein
1951	 61.87	0	2368631..2369047	-	138	158521968	-	Dole_1957	-	hypothetical protein
1952	 60.36	0	2369216..2369929	-	237	158521969	-	Dole_1958	-	enoyl-CoA hydratase/isomerase
1953	 49.94	-1	2370322..2371098	+	258	158521970	-	Dole_1959	-	glucose-1-phosphate cytidylyltransferase
1954	 58.49	0	2371095..2372183	+	362	158521971	-	Dole_1960	-	CDP-glucose 4,6-dehydratase
1955	 57.12	0	2372171..2372746	+	191	158521972	-	Dole_1961	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1956	 56.05	0	2372743..2373966	+	407	158521973	-	Dole_1962	-	C-methyltransferase
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.