IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1822	 54.26	0	2211175..2212302	-	375	158521839	-	Dole_1828	-	UDP-N-acetylglucosamine 2-epimerase
1823	 41.65	-2	2212338..2213504	-	388	158521840	-	Dole_1829	-	hypothetical protein
1824	 47.08	-1	2213497..2214456	-	319	158521841	-	Dole_1830	-	hypothetical protein
1825	 42.55	-2	2214464..2215483	-	339	158521842	-	Dole_1831	-	hypothetical protein
1826	 46.62	-1	2215497..2216339	-	280	158521843	-	Dole_1832	-	hypothetical protein
1827	 43.36	-2	2216326..2217432	-	368	158521844	-	Dole_1833	-	glycosyl transferase group 1
1828	 32.97	-2	2217437..2218534	-	365	158521845	-	Dole_1834	-	hypothetical protein
1829	 33.33	-2	2218808..2219734	-	308	158521846	-	Dole_1835	-	hypothetical protein
1830	 39.00	-2	2219798..2221138	-	446	158521847	-	Dole_1836	-	polysaccharide biosynthesis protein
1831	 54.37	0	2221192..2222313	-	373	158521848	-	Dole_1837	-	DegT/DnrJ/EryC1/StrS aminotransferase
1832	 55.47	0	2222633..2224990	-	785	158521849	-	Dole_1838	-	O-antigen polymerase
1833	 51.63	0	2226211..2226456	+	81	158521850	-	Dole_1839	-	hypothetical protein
1834	 52.94	0	2226453..2226860	+	135	158521851	-	Dole_1840	-	PilT domain-containing protein
1835	 54.95	0	2227181..2228383	+	400	158521852	-	Dole_1841	-	ATPase
1836	 50.48	-1	2228563..2229816	-	417	158521853	-	Dole_1842	-	filamentation induced by cAMP protein Fic
1837	 54.08	0	2230268..2231626	-	452	158521854	-	Dole_1843	-	hypothetical protein
1838	 45.88	-1	2231955..2232209	+	84	158521855	-	Dole_1844	-	prevent-host-death family protein
1839	 54.00	0	2232212..2232661	+	149	158521856	-	Dole_1845	-	hypothetical protein
1840	 55.30	0	2232868..2233131	+	87	158521857	-	Dole_1846	-	hypothetical protein
1841	 51.90	0	2233128..2233811	+	227	158521858	-	Dole_1847	-	hypothetical protein
1842	 62.23	0	2234150..2235163	+	337	158521859	-	Dole_1848	-	UDP-glucose 4-epimerase
1843	 58.81	0	2235341..2236981	+	546	158521860	-	Dole_1849	-	glucose-6-phosphate isomerase
1844	 59.66	0	2237185..2238198	-	337	158521861	-	Dole_1850	-	3-oxoacyl-(acyl-carrier-protein) synthase III
1845	 53.14	0	2238344..2239282	-	312	158521862	-	Dole_1851	-	hypothetical protein
1846	 56.89	0	2239745..2240593	-	282	158521863	-	Dole_1852	-	hypothetical protein
1847	 56.99	0	2240621..2242129	-	502	158521864	-	Dole_1853	-	TPR repeat-containing protein
1848	 57.66	0	2242146..2243510	-	454	158521865	-	Dole_1854	-	adenylosuccinate lyase
1849	 55.90	0	2243527..2244306	-	259	158521866	-	Dole_1855	-	peptidase A24A domain-containing protein
1850	 58.22	0	2244812..2247274	+	820	158521867	-	Dole_1856	-	ATP-dependent protease La
1851	 65.06	+1	2247271..2247954	+	227	158521868	-	Dole_1857	-	peptidase M22 glycoprotease
1852	 53.26	0	2248752..2249012	+	86	158521869	-	Dole_1858	-	hypothetical protein
1853	 61.48	0	2249026..2251086	+	686	158521870	-	Dole_1859	-	TonB-dependent receptor plug
1854	 60.61	0	2251400..2252671	+	423	158521871	-	Dole_1860	-	acyl-CoA dehydrogenase domain-containing protein
1855	 44.88	-1	2252856..2253851	+	331	158521872	-	Dole_1861	-	hypothetical protein
1856	 55.83	0	2254410..2255027	+	205	158521873	-	Dole_1862	-	TetR family transcriptional regulator
1857	 54.58	0	2255039..2255311	-	90	158521874	-	Dole_1863	-	hypothetical protein
1858	 55.34	0	2255312..2255620	-	102	158521875	-	Dole_1864	-	hypothetical protein
1859	 59.09	0	2255651..2258251	-	866	158521876	-	Dole_1865	-	pyruvate phosphate dikinase PEP/pyruvate-binding
1860	 60.34	0	2258270..2259202	-	310	158521877	-	Dole_1866	-	UspA domain-containing protein
1861	 58.33	0	2259399..2259650	+	83	158521878	-	Dole_1867	-	hypothetical protein
1862	 53.26	0	2259662..2261824	+	720	158521879	-	Dole_1868	-	glycosyl transferase family protein
1863	 49.32	-1	2261964..2263439	+	491	158521880	-	Dole_1869	-	hypothetical protein
1864	 59.74	0	2263492..2265267	+	591	158521881	-	Dole_1870	-	beta-lactamase domain-containing protein
1865	 45.30	-1	2265396..2266139	-	247	158521882	-	Dole_1871	-	hypothetical protein
1866	 47.12	-1	2266280..2267113	-	277	158521883	-	Dole_1872	-	hypothetical protein
1867	 56.69	0	2267442..2269535	-	697	158521884	-	Dole_1873	-	radical SAM domain-containing protein
1868	 58.77	0	2269958..2271046	+	362	158521885	-	Dole_1874	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1869	 48.82	-1	2271324..2272847	-	507	158521886	-	Dole_1875	-	polymorphic membrane protein Chlamydia
1870	 62.13	0	2273248..2275494	-	748	158521887	-	Dole_1876	-	heavy metal translocating P-type ATPase
1871	 57.84	0	2275523..2275726	-	67	158521888	-	Dole_1877	-	heavy metal transport/detoxification protein
1872	 54.95	0	2276222..2277049	+	275	158521889	-	Dole_1878	-	cyclic nucleotide-binding protein
1873	 56.44	0	2277060..2278751	-	563	158521890	-	Dole_1879	-	hypothetical protein
1874	 58.80	0	2278858..2279709	-	283	158521891	-	Dole_1880	-	apurinic endonuclease Apn1
1875	 54.93	0	2279890..2280630	+	246	158521892	-	Dole_1881	-	1-acylglycerol-3-phosphate O-acyltransferase
1876	 55.39	0	2280650..2281057	-	135	158521893	-	Dole_1882	-	type IV pilus assembly PilZ
1877	 60.27	0	2281320..2282210	+	296	158521894	-	Dole_1883	-	6-phosphogluconate dehydrogenase NAD-binding
1878	 58.79	0	2282575..2283717	-	380	158521895	-	Dole_1884	-	DegT/DnrJ/EryC1/StrS aminotransferase
1879	 59.85	0	2283714..2287262	-	1182	158521896	-	Dole_1885	-	DNA polymerase III, alpha subunit
1880	 60.01	0	2287472..2288929	-	485	158521897	-	Dole_1886	-	inosine-5'-monophosphate dehydrogenase
1881	 39.29	-2	2288963..2289214	-	83	158521898	-	Dole_1887	-	hypothetical protein
1882	 55.17	0	2289261..2289869	+	202	158521899	-	Dole_1888	-	Sua5/YciO/YrdC/YwlC family protein
1883	 62.88	+1	2289945..2291504	+	519	158521900	-	Dole_1889	-	propionyl-CoA carboxylase
1884	 62.81	+1	2291737..2293059	+	440	158521901	-	Dole_1890	-	radical SAM domain-containing protein
1885	 63.07	+1	2293207..2294790	-	527	158521902	-	Dole_1891	-	GCN5-related N-acetyltransferase
1886	 63.33	+1	2294815..2295324	-	169	158521903	-	Dole_1892	-	hypothetical protein
1887	 62.71	+1	2295327..2296691	-	454	158521904	-	Dole_1893	-	lysine 2,3-aminomutase YodO family protein
1888	 62.75	+1	2296907..2297596	-	229	158521905	-	Dole_1894	-	hypothetical protein
1889	 63.57	+1	2297964..2300060	+	698	158521906	-	Dole_1895	-	short chain dehydrogenase
1890	 50.78	0	2300069..2300452	+	127	158521907	-	Dole_1896	-	glyoxalase/bleomycin resistance protein/dioxygenase
1891	 60.34	0	2300467..2301351	+	294	158521908	-	Dole_1897	-	aldolase
1892	 47.85	-1	2301752..2301937	+	61	158521909	-	Dole_1898	-	hypothetical protein
1893	 52.83	0	2302880..2304151	-	423	158521910	-	Dole_1899	-	YD repeat-containing protein
1894	 59.04	0	2304331..2306100	-	589	158521911	-	Dole_1900	-	D-aminoacylase domain-containing protein
1895	 42.19	-2	2306382..2306618	+	78	158521912	-	Dole_1901	-	prevent-host-death family protein
1896	 41.55	-2	2306602..2307015	+	137	158521913	-	Dole_1902	-	hypothetical protein
1897	 56.89	0	2307144..2307992	+	282	158521914	-	Dole_1903	-	methyltransferase type 11
1898	 57.52	0	2308147..2308452	+	101	158521915	-	Dole_1904	-	hypothetical protein
1899	 59.07	0	2308491..2309030	-	179	158521916	-	Dole_1905	-	NUDIX hydrolase
1900	 62.36	0	2309027..2309839	-	270	158521917	-	Dole_1906	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1901	 63.33	+1	2309943..2310782	-	279	158521918	-	Dole_1907	-	phosphoribosyltransferase
1902	 62.64	+1	2310787..2312028	-	413	158521919	-	Dole_1908	-	isocitrate dehydrogenase, NADP-dependent
1903	 64.07	+1	2312343..2313113	-	256	158521920	-	Dole_1909	-	RNA methyltransferase
1904	 61.14	0	2313110..2313742	-	210	158521921	-	Dole_1910	-	guanylate kinase
1905	 54.76	0	2313755..2314048	-	97	158521922	-	Dole_1911	-	hypothetical protein
1906	 59.55	0	2314223..2315107	-	294	158521923	-	Dole_1912	-	hypothetical protein
1907	 56.85	0	2315263..2315802	-	179	158521924	-	Dole_1913	-	GTP-binding protein
1908	 47.46	-1	2315811..2315987	-	58	158521925	-	Dole_1914	-	hypothetical protein
1909	 57.20	0	2316229..2317041	-	270	158521926	-	Dole_1915	-	Fe-S cluster domain-containing protein
1910	 59.94	0	2317324..2318394	-	356	158521927	-	Dole_1916	-	hypothetical protein
1911	 60.27	0	2318421..2319248	-	275	158521928	-	Dole_1917	-	short chain dehydrogenase
1912	 60.08	0	2319245..2320003	-	252	158521929	-	Dole_1918	-	short chain dehydrogenase
1913	 58.48	0	2320189..2321067	-	292	158521930	-	Dole_1919	-	amidohydrolase 2
1914	 53.43	0	2321203..2321844	-	213	158521931	-	Dole_1920	-	TetR family transcriptional regulator
1915	 59.43	0	2321973..2323175	-	400	158521932	-	Dole_1921	-	acyl-CoA dehydrogenase domain-containing protein
1916	 56.82	0	2323381..2324091	-	236	158521933	-	Dole_1922	-	phosphoglycerate mutase
1917	 61.90	0	2324372..2325148	+	258	158521934	-	Dole_1923	-	electron transfer flavoprotein alpha/beta-subunit
1918	 62.80	+1	2325157..2326140	+	327	158521935	-	Dole_1924	-	electron transfer flavoprotein alpha subunit
1919	 57.95	0	2326522..2327358	+	278	158521936	-	Dole_1925	-	phosphate binding protein
1920	 58.60	0	2327470..2328399	+	309	158521937	-	Dole_1926	-	phosphate ABC transporter, inner membrane subunit PstC
1921	 58.31	0	2328409..2329293	+	294	158521938	-	Dole_1927	-	phosphate ABC transporter, inner membrane subunit PstA
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.