IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1716	 54.61	0	2068304..2069356	-	350	158521733	-	Dole_1722	-	radical SAM domain-containing protein
1717	 53.90	0	2069384..2069665	-	93	158521734	-	Dole_1723	-	hypothetical protein
1718	 53.81	0	2069832..2070539	+	235	158521735	-	Dole_1724	-	hypothetical protein
1719	 60.99	0	2070605..2071027	-	140	158521736	-	Dole_1725	-	class I peptide chain release factor
1720	 58.38	0	2071062..2072858	-	598	158521737	-	Dole_1726	-	GTP-binding protein LepA
1721	 57.64	0	2072973..2073947	-	324	158521738	-	Dole_1727	-	rhomboid family protein
1722	 60.93	0	2073982..2074818	-	278	158521739	-	Dole_1728	-	nicotinate-nucleotide pyrophosphorylase
1723	 60.56	0	2074946..2077600	-	884	158521740	-	Dole_1729	-	valyl-tRNA synthetase
1724	 46.50	-1	2077648..2077890	-	80	158521741	-	Dole_1730	-	hypothetical protein
1725	 53.68	0	2077905..2079890	-	661	158521742	-	Dole_1731	-	ATPase
1726	 60.03	0	2080097..2080834	+	245	158521743	-	Dole_1732	-	hypothetical protein
1727	 56.09	0	2081143..2083383	+	746	158521744	-	Dole_1733	-	hypothetical protein
1728	 60.05	0	2083588..2085084	-	498	158521745	-	Dole_1734	-	cobyric acid synthase CobQ
1729	 62.01	0	2085081..2085767	-	228	158521746	-	Dole_1735	-	TonB family protein
1730	 61.19	0	2085784..2086203	-	139	158521747	-	Dole_1736	-	biopolymer transport protein ExbD/TolR
1731	 64.69	+1	2086219..2086824	-	201	158521748	-	Dole_1737	-	MotA/TolQ/ExbB proton channel
1732	 60.77	0	2086821..2088551	-	576	158521749	-	Dole_1738	-	MotA/TolQ/ExbB proton channel
1733	 60.62	0	2089047..2090006	+	319	158521750	-	Dole_1739	-	signal peptide peptidase SppA, 36K type
1734	 60.05	0	2090020..2090865	-	281	158521751	-	Dole_1740	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1735	 57.33	0	2090964..2092088	-	374	158521752	-	Dole_1741	-	diguanylate cyclase
1736	 59.45	0	2092188..2093753	-	521	158521753	-	Dole_1742	-	radical SAM domain-containing protein
1737	 60.47	0	2094391..2095035	-	214	158521754	-	Dole_1743	-	metallophosphoesterase
1738	 53.49	0	2095103..2095474	-	123	158521755	-	Dole_1744	-	hypothetical protein
1739	 57.83	0	2095532..2096323	-	263	158521756	-	Dole_1745	-	thymidylate synthase-like protein
1740	 58.04	0	2096400..2097998	+	532	158521757	-	Dole_1746	-	metallophosphoesterase
1741	 58.20	0	2098060..2098815	+	251	158521758	-	Dole_1747	-	heat shock protein DnaJ domain-containing protein
1742	 57.35	0	2098812..2099627	-	271	158521759	-	Dole_1748	-	beta-lactamase domain-containing protein
1743	 63.50	+1	2099624..2100979	-	451	158521760	-	Dole_1749	-	MiaB-like tRNA modifying enzyme
1744	 59.80	0	2101153..2102229	-	358	158521761	-	Dole_1750	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1745	 61.80	0	2102649..2104868	-	739	158521762	-	Dole_1751	-	methyl-accepting chemotaxis sensory transducer
1746	 56.62	0	2105028..2105933	+	301	158521763	-	Dole_1752	-	diguanylate cyclase
1747	 56.57	0	2106130..2108436	+	768	158521764	-	Dole_1753	-	FG-GAP repeat-containing protein
1748	 56.67	0	2108481..2110811	+	776	158521765	-	Dole_1754	-	FG-GAP repeat-containing protein
1749	 59.80	0	2111080..2113161	+	693	158521766	-	Dole_1755	-	GCN5-related N-acetyltransferase
1750	 55.48	0	2113603..2115729	+	708	158521767	-	Dole_1756	-	FG-GAP repeat-containing protein
1751	 56.91	0	2115767..2117959	+	730	158521768	-	Dole_1757	-	FG-GAP repeat-containing protein
1752	 60.00	0	2118065..2118964	+	299	158521769	-	Dole_1758	-	ApbE family lipoprotein
1753	 49.77	-1	2119260..2119478	-	72	158521770	-	Dole_1759	-	prevent-host-death family protein
1754	 48.85	-1	2119480..2119872	-	130	158521771	-	Dole_1760	-	PilT domain-containing protein
1755	 59.21	0	2120165..2122069	+	634	158521772	-	Dole_1761	-	small GTP-binding protein
1756	 62.11	0	2122049..2123365	-	438	158521773	-	Dole_1762	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
1757	 58.06	0	2123370..2125403	-	677	158521774	-	Dole_1763	-	ABC-type branched-chain amino acid transport systems periplasmic component-like protein
1758	 60.85	0	2125422..2126366	-	314	158521775	-	Dole_1764	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1759	 60.68	0	2126385..2128004	-	539	158521776	-	Dole_1765	-	thiamine-phosphate pyrophosphorylase
1760	 59.97	0	2128082..2128663	-	193	158521777	-	Dole_1766	-	metal dependent phophohydrolase
1761	 58.68	0	2128721..2129734	-	337	158521778	-	Dole_1767	-	peptide chain release factor 2
1762	 59.48	0	2129873..2131501	-	542	158521779	-	Dole_1768	-	apolipoprotein N-acyltransferase
1763	 62.90	+1	2131498..2132373	-	291	158521780	-	Dole_1769	-	hypothetical protein
1764	 54.94	0	2132668..2133639	-	323	158521781	-	Dole_1770	-	alpha/beta hydrolase fold
1765	 60.50	0	2133707..2135572	-	621	158521782	-	Dole_1771	-	aldehyde ferredoxin oxidoreductase
1766	 52.38	0	2135655..2136263	-	202	158521783	-	Dole_1772	-	TetR family transcriptional regulator
1767	 52.14	0	2136574..2137530	-	318	158521784	-	Dole_1773	-	TPR repeat-containing protein
1768	 56.00	0	2137536..2139983	-	815	158521785	-	Dole_1774	-	Patched family protein
1769	 56.67	0	2140306..2140515	+	69	158521786	-	Dole_1775	-	FmdB family regulatory protein
1770	 60.51	0	2140694..2142253	+	519	158521787	-	Dole_1776	-	histidine kinase
1771	 59.87	0	2142240..2143637	+	465	158521788	-	Dole_1777	-	two component, sigma54 specific, Fis family transcriptional regulator
1772	 62.73	+1	2143638..2144855	+	405	158521789	-	Dole_1778	-	acetyl-CoA acetyltransferase
1773	 55.60	0	2145153..2145938	+	261	158521790	-	Dole_1779	-	endonuclease/exonuclease/phosphatase
1774	 57.99	0	2146113..2146907	+	264	158521791	-	Dole_1780	-	hypothetical protein
1775	 58.66	0	2146928..2147614	+	228	158521792	-	Dole_1781	-	glycerophosphoryl diester phosphodiesterase
1776	 57.38	0	2148031..2148267	+	78	158521793	-	Dole_1782	-	prevent-host-death family protein
1777	 50.80	0	2148267..2148701	+	144	158521794	-	Dole_1783	-	PilT domain-containing protein
1778	 45.96	-1	2149005..2149598	-	197	158521795	-	Dole_1784	-	hypothetical protein
1779	 58.14	0	2150224..2151747	-	507	158521796	-	Dole_1785	-	NifA subfamily transcriptional regulator
1780	 50.21	-1	2153402..2153887	+	161	158521797	-	Dole_1786	-	MarR family transcriptional regulator
1781	 56.59	0	2153988..2157986	+	1332	158521798	-	Dole_1787	-	polymorphic outer membrane protein
1782	 54.41	0	2158421..2161699	+	1092	158521799	-	Dole_1788	-	polymorphic membrane protein Chlamydia
1783	 51.75	0	2161724..2165095	+	1123	158521800	-	Dole_1789	-	hypothetical protein
1784	 51.92	0	2165108..2167507	+	799	158521801	-	Dole_1790	-	polymorphic membrane protein Chlamydia
1785	 55.57	0	2167666..2169675	+	669	158521802	-	Dole_1791	-	hypothetical protein
1786	 54.48	0	2170069..2172867	+	932	158521803	-	Dole_1792	-	hypothetical protein
1787	 60.00	0	2173072..2173746	+	224	158521804	-	Dole_1793	-	fibronectin type III domain-containing protein
1788	 42.07	-2	2173788..2174714	+	308	158521805	-	Dole_1794	-	sulfotransferase
1789	 45.40	-1	2174822..2175658	+	278	158521806	-	Dole_1795	-	hypothetical protein
1790	 50.15	-1	2175686..2177047	+	453	158521807	-	Dole_1796	-	polysaccharide biosynthesis protein
1791	 44.35	-2	2177044..2178096	+	350	158521808	-	Dole_1797	-	putative poly-gamma-glutamate biosynthesis (capsule formation)-like protein
1792	 43.58	-2	2178093..2178980	+	295	158521809	-	Dole_1798	-	hypothetical protein
1793	 45.66	-1	2178981..2179937	+	318	158521810	-	Dole_1799	-	hypothetical protein
1794	 47.44	-1	2179939..2181285	+	448	158521811	-	Dole_1800	-	putative polysaccharide biosynthesis protein
1795	 46.08	-1	2181285..2182727	+	480	158521812	-	Dole_1801	-	hypothetical protein
1796	 54.57	0	2182717..2183832	+	371	158521813	-	Dole_1802	-	glycosyl transferase group 1
1797	 49.43	-1	2183834..2184964	+	376	158521814	-	Dole_1803	-	glycosyl transferase group 1
1798	 50.32	-1	2185013..2186260	+	415	158521815	-	Dole_1804	-	glycosyl transferase group 1
1799	 40.41	-2	2186288..2187304	+	338	158521816	-	Dole_1805	-	hypothetical protein
1800	 47.59	-1	2187340..2188272	+	310	158521817	-	Dole_1806	-	methyltransferase type 11
1801	 53.66	0	2188347..2189438	+	363	158521818	-	Dole_1807	-	radical SAM domain-containing protein
1802	 53.03	0	2189446..2190567	+	373	158521819	-	Dole_1808	-	glycosyl transferase group 1
1803	 44.88	-1	2191131..2192126	-	331	158521820	-	Dole_1809	-	hypothetical protein
1804	 53.88	0	2192308..2193840	+	510	158521821	-	Dole_1810	-	undecaprenyl-phosphate galactose phosphotransferase
1805	 48.28	-1	2193973..2194233	+	86	158521822	-	Dole_1811	-	hypothetical protein
1806	 44.36	-2	2194230..2194628	+	132	158521823	-	Dole_1812	-	PilT domain-containing protein
1807	 49.26	-1	2194794..2195942	+	382	158521824	-	Dole_1813	-	AAA+ superfamily protein
1808	 51.57	0	2196430..2196588	+	52	158521825	-	Dole_1814	-	hypothetical protein
1809	 49.74	-1	2196585..2196962	+	125	158521826	-	Dole_1815	-	hypothetical protein
1810	 39.19	-2	2197336..2197608	+	90	158521827	-	Dole_1816	-	hypothetical protein
1811	 45.49	-1	2197608..2197862	+	84	158521828	-	Dole_1817	-	addiction module antitoxin
1812	 54.32	0	2198796..2200115	+	439	158521829	-	Dole_1818	-	UDP-glucose/GDP-mannose dehydrogenase
1813	 51.49	0	2200142..2201083	+	313	158521830	-	Dole_1819	-	oxidoreductase domain-containing protein
1814	 55.14	0	2201098..2201661	+	187	158521831	-	Dole_1820	-	hexapaptide repeat-containing transferase
1815	 56.01	0	2201688..2203685	-	665	158521832	-	Dole_1821	-	sugar transferase
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.