IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1647	 58.91	0	1964000..1965160	-	386	158521664	-	Dole_1653	-	periplasmic binding protein
1648	 60.18	0	1965543..1967807	-	754	158521665	-	Dole_1654	-	O-antigen polymerase
1649	 44.44	-2	1968243..1968539	-	98	158521666	-	Dole_1655	-	excinuclease ABC subunit C
1650	 58.37	0	1968731..1969417	-	228	158521667	-	Dole_1656	-	protein-tyrosine-phosphatase
1651	 54.66	0	1969414..1971579	-	721	158521668	-	Dole_1657	-	non-specific protein-tyrosine kinase
1652	 54.80	0	1971698..1972531	-	277	158521669	-	Dole_1658	-	polysaccharide export protein
1653	 52.46	0	1972700..1973959	-	419	158521670	-	Dole_1659	-	hypothetical protein
1654	 57.80	0	1974273..1976348	-	691	158521671	-	Dole_1660	-	translation elongation factor G
1655	 63.64	+1	1976451..1977209	-	252	158521672	-	Dole_1661	-	hemolysin A
1656	 61.19	0	1977295..1979175	-	626	158521673	-	Dole_1662	-	deoxyxylulose-5-phosphate synthase
1657	 60.02	0	1979186..1980073	-	295	158521674	-	Dole_1663	-	polyprenyl synthetase
1658	 53.25	0	1980060..1980305	-	81	158521675	-	Dole_1664	-	exodeoxyribonuclease VII, small subunit
1659	 60.36	0	1980486..1981832	-	448	158521676	-	Dole_1665	-	exodeoxyribonuclease VII, large subunit
1660	 63.31	+1	1982046..1982552	+	168	158521677	-	Dole_1666	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1661	 56.94	0	1982616..1984055	+	479	158521678	-	Dole_1667	-	cysteinyl-tRNA synthetase
1662	 63.33	+1	1984359..1985138	+	259	158521679	-	Dole_1668	-	hypothetical protein
1663	 55.01	0	1985493..1986101	+	202	158521680	-	Dole_1669	-	putative GAF sensor protein
1664	 53.91	0	1986299..1986745	+	148	158521681	-	Dole_1670	-	BLUF domain-containing protein
1665	 51.15	0	1987119..1987769	+	216	158521682	-	Dole_1671	-	hypothetical protein
1666	 58.35	0	1987807..1989633	-	608	158521683	-	Dole_1672	-	AMP-dependent synthetase and ligase
1667	 61.34	0	1990000..1991145	+	381	158521684	-	Dole_1673	-	peptidase M24
1668	 59.62	0	1991142..1992035	+	297	158521685	-	Dole_1674	-	tyrosine recombinase XerD
1669	 61.83	0	1992248..1993921	+	557	158521686	-	Dole_1675	-	PfaD family protein
1670	 61.11	0	1994060..2000629	+	2189	158521687	-	Dole_1676	-	polyketide-type polyunsaturated fatty acid synthase, PfaA
1671	 61.53	0	2000749..2007879	+	2376	158521688	-	Dole_1677	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
1672	 52.77	0	2007903..2009780	-	625	158521689	-	Dole_1678	-	putative PAS/PAC sensor protein
1673	 64.47	+1	2010011..2010238	+	75	158521690	-	Dole_1679	-	FmdB family regulatory protein
1674	 51.75	0	2010290..2010517	+	75	158521691	-	Dole_1680	-	hypothetical protein
1675	 62.96	+1	2010533..2010964	-	143	158521692	-	Dole_1681	-	hypothetical protein
1676	 53.20	0	2010986..2013235	-	749	158521693	-	Dole_1682	-	methyl-accepting chemotaxis sensory transducer
1677	 56.39	0	2013319..2014233	-	304	158521694	-	Dole_1683	-	3-hydroxybutyryl-CoA dehydrogenase
1678	 55.38	0	2014625..2014996	+	123	158521695	-	Dole_1684	-	hypothetical protein
1679	 56.94	0	2015072..2016346	-	424	158521696	-	Dole_1685	-	2-hydroxyglutaryl-CoA dehydratase D-component
1680	 53.82	0	2016406..2017518	-	370	158521697	-	Dole_1686	-	2-hydroxyglutaryl-CoA dehydratase D-component
1681	 51.83	0	2018081..2018626	+	181	158521698	-	Dole_1687	-	hypothetical protein
1682	 60.71	0	2018722..2019543	-	273	158521699	-	Dole_1688	-	nitroreductase
1683	 53.33	0	2019589..2021853	-	754	158521700	-	Dole_1689	-	hypothetical protein
1684	 50.49	-1	2021876..2024137	-	753	158521701	-	Dole_1690	-	hypothetical protein
1685	 58.06	0	2024295..2024573	+	92	158521702	-	Dole_1691	-	hypothetical protein
1686	 53.97	0	2024634..2025011	+	125	158521703	-	Dole_1692	-	hypothetical protein
1687	 61.11	0	2025021..2025452	-	143	158521704	-	Dole_1693	-	hypothetical protein
1688	 55.86	0	2025756..2027864	+	702	158521705	-	Dole_1694	-	phosphofructokinase
1689	 57.89	0	2027894..2028976	+	360	158521706	-	Dole_1695	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1690	 57.48	0	2029076..2030218	+	380	158521707	-	Dole_1696	-	histidine kinase
1691	 58.63	0	2030458..2030706	+	82	158521708	-	Dole_1697	-	AbrB family transcriptional regulator
1692	 51.00	0	2030703..2031104	+	133	158521709	-	Dole_1698	-	PilT domain-containing protein
1693	 45.59	-1	2031469..2031672	+	67	158521710	-	Dole_1699	-	hypothetical protein
1694	 47.94	-1	2031644..2031910	+	88	158521711	-	Dole_1700	-	addiction module antitoxin
1695	 51.05	0	2032334..2032858	-	174	158521712	-	Dole_1701	-	hypothetical protein
1696	 31.73	-2	2032953..2033513	-	186	158521713	-	Dole_1702	-	hypothetical protein
1697	 55.32	0	2033679..2039963	-	2094	158521714	-	Dole_1703	-	YD repeat-/RHS repeat-containing protein
1698	 49.18	-1	2040043..2045310	-	1755	158521715	-	Dole_1704	-	polymorphic outer membrane protein
1699	 60.11	0	2045873..2049397	+	1174	158521716	-	Dole_1705	-	transcription-repair coupling factor
1700	 53.93	0	2049426..2050124	+	232	158521717	-	Dole_1706	-	SurA domain-containing protein
1701	 54.78	0	2050187..2051137	+	316	158521718	-	Dole_1707	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1702	 55.73	0	2051187..2051945	+	252	158521719	-	Dole_1708	-	hypothetical protein
1703	 57.85	0	2052012..2052794	+	260	158521720	-	Dole_1709	-	DNA repair protein RecO
1704	 60.21	0	2052873..2053925	+	350	158521721	-	Dole_1710	-	GHMP kinase
1705	 56.81	0	2054073..2054975	+	300	158521722	-	Dole_1711	-	glycyl-tRNA synthetase subunit alpha
1706	 59.60	0	2054972..2057080	+	702	158521723	-	Dole_1712	-	glycyl-tRNA synthetase, beta subunit
1707	 56.08	0	2057130..2057384	+	84	158521724	-	Dole_1713	-	hypothetical protein
1708	 61.68	0	2057438..2058199	+	253	158521725	-	Dole_1714	-	purine phosphorylase family 1
1709	 61.01	0	2058184..2060232	+	682	158521726	-	Dole_1715	-	DNA ligase, NAD-dependent
1710	 61.35	0	2060248..2060529	+	93	158521727	-	Dole_1716	-	acylphosphatase
1711	 49.08	-1	2060636..2060908	-	90	158521728	-	Dole_1717	-	histone family protein DNA-binding protein
1712	 59.95	0	2061247..2062392	-	381	158521729	-	Dole_1718	-	signal recognition particle-docking protein FtsY
1713	 57.46	0	2062433..2066047	-	1204	158521730	-	Dole_1719	-	chromosome segregation protein SMC
1714	 51.43	0	2066736..2067503	+	255	158521731	-	Dole_1720	-	N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase
1715	 50.00	-1	2067503..2068288	+	261	158521732	-	Dole_1721	-	glycosyl transferase family protein
1716	 54.61	0	2068304..2069356	-	350	158521733	-	Dole_1722	-	radical SAM domain-containing protein
1717	 53.90	0	2069384..2069665	-	93	158521734	-	Dole_1723	-	hypothetical protein
1718	 53.81	0	2069832..2070539	+	235	158521735	-	Dole_1724	-	hypothetical protein
1719	 60.99	0	2070605..2071027	-	140	158521736	-	Dole_1725	-	class I peptide chain release factor
1720	 58.38	0	2071062..2072858	-	598	158521737	-	Dole_1726	-	GTP-binding protein LepA
1721	 57.64	0	2072973..2073947	-	324	158521738	-	Dole_1727	-	rhomboid family protein
1722	 60.93	0	2073982..2074818	-	278	158521739	-	Dole_1728	-	nicotinate-nucleotide pyrophosphorylase
1723	 60.56	0	2074946..2077600	-	884	158521740	-	Dole_1729	-	valyl-tRNA synthetase
1724	 46.50	-1	2077648..2077890	-	80	158521741	-	Dole_1730	-	hypothetical protein
1725	 53.68	0	2077905..2079890	-	661	158521742	-	Dole_1731	-	ATPase
1726	 60.03	0	2080097..2080834	+	245	158521743	-	Dole_1732	-	hypothetical protein
1727	 56.09	0	2081143..2083383	+	746	158521744	-	Dole_1733	-	hypothetical protein
1728	 60.05	0	2083588..2085084	-	498	158521745	-	Dole_1734	-	cobyric acid synthase CobQ
1729	 62.01	0	2085081..2085767	-	228	158521746	-	Dole_1735	-	TonB family protein
1730	 61.19	0	2085784..2086203	-	139	158521747	-	Dole_1736	-	biopolymer transport protein ExbD/TolR
1731	 64.69	+1	2086219..2086824	-	201	158521748	-	Dole_1737	-	MotA/TolQ/ExbB proton channel
1732	 60.77	0	2086821..2088551	-	576	158521749	-	Dole_1738	-	MotA/TolQ/ExbB proton channel
1733	 60.62	0	2089047..2090006	+	319	158521750	-	Dole_1739	-	signal peptide peptidase SppA, 36K type
1734	 60.05	0	2090020..2090865	-	281	158521751	-	Dole_1740	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1735	 57.33	0	2090964..2092088	-	374	158521752	-	Dole_1741	-	diguanylate cyclase
1736	 59.45	0	2092188..2093753	-	521	158521753	-	Dole_1742	-	radical SAM domain-containing protein
1737	 60.47	0	2094391..2095035	-	214	158521754	-	Dole_1743	-	metallophosphoesterase
1738	 53.49	0	2095103..2095474	-	123	158521755	-	Dole_1744	-	hypothetical protein
1739	 57.83	0	2095532..2096323	-	263	158521756	-	Dole_1745	-	thymidylate synthase-like protein
1740	 58.04	0	2096400..2097998	+	532	158521757	-	Dole_1746	-	metallophosphoesterase
1741	 58.20	0	2098060..2098815	+	251	158521758	-	Dole_1747	-	heat shock protein DnaJ domain-containing protein
1742	 57.35	0	2098812..2099627	-	271	158521759	-	Dole_1748	-	beta-lactamase domain-containing protein
1743	 63.50	+1	2099624..2100979	-	451	158521760	-	Dole_1749	-	MiaB-like tRNA modifying enzyme
1744	 59.80	0	2101153..2102229	-	358	158521761	-	Dole_1750	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1745	 61.80	0	2102649..2104868	-	739	158521762	-	Dole_1751	-	methyl-accepting chemotaxis sensory transducer
1746	 56.62	0	2105028..2105933	+	301	158521763	-	Dole_1752	-	diguanylate cyclase
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.