version 1.0
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167 3265 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 121 61.52 0 132858..136085 + 1075 158520138 - Dole_0121 - carbamoyl-phosphate synthase, large subunit 122 61.82 0 136082..137485 + 467 158520139 - Dole_0122 - amidophosphoribosyltransferase 123 39.16 -2 137939..138916 - 325 158520140 - Dole_0123 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 124 34.45 -2 139017..139463 - 148 158520141 - Dole_0124 - MarR family transcriptional regulator 125 58.24 0 139717..140736 + 339 158520142 - Dole_0125 - hypothetical protein 126 61.76 0 140761..142818 + 685 158520143 - Dole_0126 - formate dehydrogenase 127 50.92 0 143290..143562 + 90 158520144 - Dole_0127 - hypothetical protein 128 58.23 0 143604..144326 + 240 158520145 - Dole_0128 - 1-acylglycerol-3-phosphate O-acyltransferase 129 61.92 0 144424..145266 + 280 158520146 - Dole_0129 - pyrroline-5-carboxylate reductase 130 60.41 0 145259..145945 + 228 158520147 - Dole_0130 - cytochrome c biogenesis protein transmembrane region 131 56.89 0 146077..146526 + 149 158520148 - Dole_0131 - thioredoxin domain-containing protein 132 58.84 0 146529..147116 + 195 158520149 - Dole_0132 - NUDIX hydrolase 133 63.54 +1 147111..147398 - 95 158520150 - Dole_0133 - hypothetical protein 134 55.77 0 147419..147877 - 152 158520151 - Dole_0134 - GCN5-related N-acetyltransferase 135 62.44 +1 148111..150051 - 646 158520152 - Dole_0135 - 1A family penicillin-binding protein 136 57.24 0 150159..150455 + 98 158520153 - Dole_0136 - hypothetical protein 137 61.94 0 150540..151301 + 253 158520154 - Dole_0137 - ATP-grasp domain-containing protein 138 61.19 0 151327..152805 + 492 158520155 - Dole_0138 - CoA-binding domain-containing protein 139 57.36 0 152951..153283 + 110 158520156 - Dole_0139 - Hpt protein 140 57.35 0 153335..154450 + 371 158520157 - Dole_0140 - response regulator receiver protein 141 60.87 0 154594..155076 + 160 158520158 - Dole_0141 - putative anti-sigma regulatory factor, serine/threonine protein kinase 142 60.45 0 155249..156262 + 337 158520159 - Dole_0142 - hypothetical protein 143 60.14 0 156282..157124 + 280 158520160 - Dole_0143 - amidohydrolase 2 144 56.92 0 157358..158896 - 512 158520161 - Dole_0144 - hypothetical protein 145 60.27 0 159138..159731 - 197 158520162 - Dole_0145 - hypothetical protein 146 36.01 -2 159793..160650 - 285 158520163 - Dole_0146 - hypothetical protein 147 48.61 -1 160632..161135 - 167 158520164 - Dole_0147 - hypothetical protein 148 59.74 0 161253..162740 - 495 158520165 - Dole_0148 - transglutaminase domain-containing protein 149 64.47 +1 162933..164750 - 605 158520166 - Dole_0149 - DNA mismatch repair protein MutL 150 59.26 0 164810..164998 - 62 158520167 - Dole_0150 - hypothetical protein 151 63.18 +1 165014..166474 - 486 158520168 - Dole_0151 - glutamyl-tRNA(Gln) amidotransferase, A subunit 152 54.17 0 166507..166794 - 95 158520169 - Dole_0152 - glutamyl-tRNA(Gln) amidotransferase, C subunit 153 59.33 0 166953..168641 + 562 158520170 - Dole_0153 - hypothetical protein 154 55.08 0 168653..169213 - 186 158520171 - Dole_0154 - hypothetical protein 155 58.48 0 169729..172134 + 801 158520172 - Dole_0155 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding 156 61.60 0 172147..173331 + 394 158520173 - Dole_0156 - acetyl-CoA acetyltransferase 157 61.77 0 173580..174560 + 326 158520174 - Dole_0157 - NAD-dependent epimerase/dehydratase 158 54.08 0 174557..175009 + 150 158520175 - Dole_0158 - hypothetical protein 159 50.21 -1 175179..175652 + 157 158520176 - Dole_0159 - UspA domain-containing protein 160 54.81 0 175844..176248 + 134 158520177 - Dole_0160 - UspA domain-containing protein 161 57.88 0 176276..177982 - 568 158520178 - Dole_0161 - TrkA domain-containing protein 162 58.16 0 178152..179702 + 516 158520179 - Dole_0162 - CoA-binding domain-containing protein 163 61.10 0 179699..181978 + 759 158520180 - Dole_0163 - RNA-binding S1 domain-containing protein 164 45.98 -1 182182..184158 + 658 158520181 - Dole_0164 - AMP-dependent synthetase and ligase 165 58.56 0 184295..184627 + 110 158520182 - Dole_0165 - TfoX domain-containing protein 166 54.03 0 184693..186132 + 479 158520183 - Dole_0166 - amidase 167 40.19 -2 186392..187033 - 213 158520184 - Dole_0167 - TetR family transcriptional regulator 168 44.96 -1 187230..188261 + 343 158520185 - Dole_0168 - enoyl-CoA hydratase/isomerase 169 53.79 0 188285..189154 + 289 158520186 - Dole_0169 - short-chain dehydrogenase/reductase SDR 170 49.24 -1 189216..189542 + 108 158520187 - Dole_0170 - DNA-binding protein 171 59.32 0 189575..191494 - 639 158520188 - Dole_0171 - ABC transporter-related protein 172 60.74 0 191515..192492 - 325 158520189 - Dole_0172 - alpha/beta hydrolase fold 173 57.45 0 192500..193378 - 292 158520190 - Dole_0173 - radical SAM domain-containing protein 174 57.09 0 193732..194274 + 180 158520191 - Dole_0174 - peptidylprolyl isomerase FKBP-type 175 53.51 0 194367..195065 - 232 158520192 - Dole_0175 - TetR family transcriptional regulator 176 57.48 0 195263..196111 + 282 158520193 - Dole_0176 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 177 60.76 0 196133..197182 + 349 158520194 - Dole_0177 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 178 56.68 0 197194..198024 + 276 158520195 - Dole_0178 - hypothetical protein 179 55.17 0 198054..198575 + 173 158520196 - Dole_0179 - hypothetical protein 180 48.23 -1 198631..199026 + 131 158520197 - Dole_0180 - endoribonuclease L-PSP 181 56.18 0 199141..200208 + 355 158520198 - Dole_0181 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 182 55.32 0 200407..201270 + 287 158520199 - Dole_0182 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 183 46.86 -1 201532..202692 + 386 158520200 - Dole_0183 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 184 47.22 -1 202839..203846 + 335 158520201 - Dole_0184 - TetR family transcriptional regulator 185 57.80 0 203920..204675 + 251 158520202 - Dole_0185 - hypothetical protein 186 53.25 0 204860..205612 - 250 158520203 - Dole_0186 - MerR family transcriptional regulator 187 58.11 0 205948..206940 + 330 158520204 - Dole_0187 - molybdenum cofactor biosynthesis protein A 188 54.90 0 207128..207331 + 67 158520205 - Dole_0188 - twin arginine-targeting protein translocase 189 51.85 0 207371..208126 - 251 158520206 - Dole_0189 - MerR family transcriptional regulator 190 58.07 0 208138..208707 - 189 158520207 - Dole_0190 - formylmethanofuran dehydrogenase subunit E region 191 54.90 0 208961..209368 + 135 158520208 - Dole_0191 - hypothetical protein 192 57.73 0 209441..210022 + 193 158520209 - Dole_0192 - Rieske (2Fe-2S) domain-containing protein 193 61.48 0 210022..210387 + 121 158520210 - Dole_0193 - hypothetical protein 194 58.28 0 210524..213505 + 993 158520211 - Dole_0194 - molybdopterin oxidoreductase 195 55.26 0 213550..214215 + 221 158520212 - Dole_0195 - gamma-subunit of ethylbenzene dehydrogenase 196 59.91 0 214273..215442 + 389 158520213 - Dole_0196 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 197 56.13 0 215484..216233 + 249 158520214 - Dole_0197 - delta-subunit of ethylbenzene dehydrogenase 198 59.13 0 216247..217002 + 251 158520215 - Dole_0198 - cytochrome b/b6 domain-containing protein 199 55.78 0 217025..217768 + 247 158520216 - Dole_0199 - hypothetical protein 200 56.90 0 217765..219996 + 743 158520217 - Dole_0200 - cytochrome c class I 201 58.64 0 220159..222813 + 884 158520218 - Dole_0201 - carbohydrate-binding and sugar hydrolysis 202 63.65 +1 222953..224179 + 408 158520219 - Dole_0202 - molybdenum cofactor synthesis domain-containing protein 203 57.34 0 224226..225737 + 503 158520220 - Dole_0203 - acyl-CoA dehydrogenase domain-containing protein 204 61.81 0 225801..226913 + 370 158520221 - Dole_0204 - acyl-CoA dehydrogenase domain-containing protein 205 60.65 0 227044..228987 + 647 158520222 - Dole_0205 - methyl-accepting chemotaxis sensory transducer 206 60.42 0 229297..229776 + 159 158520223 - Dole_0206 - molybdopterin-guanine dinucleotide biosynthesis protein B 207 56.20 0 229858..230220 + 120 158520224 - Dole_0207 - ModE family transcriptional regulator 208 50.00 -1 230312..231187 + 291 158520225 - Dole_0208 - molybdenum ABC transporter, periplasmic molybdate-binding protein 209 49.29 -1 231184..231960 + 258 158520226 - Dole_0209 - binding-protein-dependent transport systems inner membrane component 210 51.47 0 231957..233048 + 363 158520227 - Dole_0210 - ABC transporter-related protein 211 44.44 -2 233101..233361 - 86 158520228 - Dole_0211 - hypothetical protein 212 60.69 0 233500..234420 + 306 158520229 - Dole_0212 - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein 213 60.61 0 234410..235168 + 252 158520230 - Dole_0213 - binding-protein-dependent transport systems inner membrane component 214 57.88 0 235165..236256 + 363 158520231 - Dole_0214 - ABC transporter-related protein 215 60.49 0 236378..237106 + 242 158520232 - Dole_0215 - hypothetical protein 216 50.41 -1 237312..237557 + 81 158520233 - Dole_0216 - hypothetical protein 217 56.55 0 237669..238706 - 345 158520234 - Dole_0217 - lipid-binding START domain-containing protein 218 59.73 0 238924..239370 + 148 158520235 - Dole_0218 - hypothetical protein 219 57.18 0 239438..241240 + 600 158520236 - Dole_0219 - radical SAM domain-containing protein 220 51.79 0 241252..241419 + 55 158520237 - Dole_0220 - hypothetical protein 56.47 MEAN 5.93 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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