version 1.0
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167 3265 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1636 56.55 0 1950313..1951350 + 345 158521653 - Dole_1642 - enoyl-CoA hydratase/isomerase 1637 60.75 0 1951350..1952498 + 382 158521654 - Dole_1643 - saccharopine dehydrogenase 1638 58.93 0 1952509..1953141 + 210 158521655 - Dole_1644 - metal dependent phosphohydrolase 1639 58.37 0 1953179..1953937 + 252 158521656 - Dole_1645 - phosphoribosylglycinamide formyltransferase 1640 59.85 0 1954134..1956332 + 732 158521657 - Dole_1646 - catalase/peroxidase HPI 1641 58.48 0 1956431..1957786 - 451 158521658 - Dole_1647 - glutamate dehydrogenase 1642 52.23 0 1957891..1958472 - 193 158521659 - Dole_1648 - hypothetical protein 1643 62.57 +1 1958747..1960186 - 479 158521660 - Dole_1649 - two component, sigma54 specific, Fis family transcriptional regulator 1644 59.71 0 1960192..1962030 - 612 158521661 - Dole_1650 - histidine kinase 1645 61.61 0 1962085..1962915 - 276 158521662 - Dole_1651 - ABC transporter-related protein 1646 64.43 +1 1962912..1963985 - 357 158521663 - Dole_1652 - transport system permease protein 1647 58.91 0 1964000..1965160 - 386 158521664 - Dole_1653 - periplasmic binding protein 1648 60.18 0 1965543..1967807 - 754 158521665 - Dole_1654 - O-antigen polymerase 1649 44.44 -2 1968243..1968539 - 98 158521666 - Dole_1655 - excinuclease ABC subunit C 1650 58.37 0 1968731..1969417 - 228 158521667 - Dole_1656 - protein-tyrosine-phosphatase 1651 54.66 0 1969414..1971579 - 721 158521668 - Dole_1657 - non-specific protein-tyrosine kinase 1652 54.80 0 1971698..1972531 - 277 158521669 - Dole_1658 - polysaccharide export protein 1653 52.46 0 1972700..1973959 - 419 158521670 - Dole_1659 - hypothetical protein 1654 57.80 0 1974273..1976348 - 691 158521671 - Dole_1660 - translation elongation factor G 1655 63.64 +1 1976451..1977209 - 252 158521672 - Dole_1661 - hemolysin A 1656 61.19 0 1977295..1979175 - 626 158521673 - Dole_1662 - deoxyxylulose-5-phosphate synthase 1657 60.02 0 1979186..1980073 - 295 158521674 - Dole_1663 - polyprenyl synthetase 1658 53.25 0 1980060..1980305 - 81 158521675 - Dole_1664 - exodeoxyribonuclease VII, small subunit 1659 60.36 0 1980486..1981832 - 448 158521676 - Dole_1665 - exodeoxyribonuclease VII, large subunit 1660 63.31 +1 1982046..1982552 + 168 158521677 - Dole_1666 - 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1661 56.94 0 1982616..1984055 + 479 158521678 - Dole_1667 - cysteinyl-tRNA synthetase 1662 63.33 +1 1984359..1985138 + 259 158521679 - Dole_1668 - hypothetical protein 1663 55.01 0 1985493..1986101 + 202 158521680 - Dole_1669 - putative GAF sensor protein 1664 53.91 0 1986299..1986745 + 148 158521681 - Dole_1670 - BLUF domain-containing protein 1665 51.15 0 1987119..1987769 + 216 158521682 - Dole_1671 - hypothetical protein 1666 58.35 0 1987807..1989633 - 608 158521683 - Dole_1672 - AMP-dependent synthetase and ligase 1667 61.34 0 1990000..1991145 + 381 158521684 - Dole_1673 - peptidase M24 1668 59.62 0 1991142..1992035 + 297 158521685 - Dole_1674 - tyrosine recombinase XerD 1669 61.83 0 1992248..1993921 + 557 158521686 - Dole_1675 - PfaD family protein 1670 61.11 0 1994060..2000629 + 2189 158521687 - Dole_1676 - polyketide-type polyunsaturated fatty acid synthase, PfaA 1671 61.53 0 2000749..2007879 + 2376 158521688 - Dole_1677 - Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 1672 52.77 0 2007903..2009780 - 625 158521689 - Dole_1678 - putative PAS/PAC sensor protein 1673 64.47 +1 2010011..2010238 + 75 158521690 - Dole_1679 - FmdB family regulatory protein 1674 51.75 0 2010290..2010517 + 75 158521691 - Dole_1680 - hypothetical protein 1675 62.96 +1 2010533..2010964 - 143 158521692 - Dole_1681 - hypothetical protein 1676 53.20 0 2010986..2013235 - 749 158521693 - Dole_1682 - methyl-accepting chemotaxis sensory transducer 1677 56.39 0 2013319..2014233 - 304 158521694 - Dole_1683 - 3-hydroxybutyryl-CoA dehydrogenase 1678 55.38 0 2014625..2014996 + 123 158521695 - Dole_1684 - hypothetical protein 1679 56.94 0 2015072..2016346 - 424 158521696 - Dole_1685 - 2-hydroxyglutaryl-CoA dehydratase D-component 1680 53.82 0 2016406..2017518 - 370 158521697 - Dole_1686 - 2-hydroxyglutaryl-CoA dehydratase D-component 1681 51.83 0 2018081..2018626 + 181 158521698 - Dole_1687 - hypothetical protein 1682 60.71 0 2018722..2019543 - 273 158521699 - Dole_1688 - nitroreductase 1683 53.33 0 2019589..2021853 - 754 158521700 - Dole_1689 - hypothetical protein 1684 50.49 -1 2021876..2024137 - 753 158521701 - Dole_1690 - hypothetical protein 1685 58.06 0 2024295..2024573 + 92 158521702 - Dole_1691 - hypothetical protein 1686 53.97 0 2024634..2025011 + 125 158521703 - Dole_1692 - hypothetical protein 1687 61.11 0 2025021..2025452 - 143 158521704 - Dole_1693 - hypothetical protein 1688 55.86 0 2025756..2027864 + 702 158521705 - Dole_1694 - phosphofructokinase 1689 57.89 0 2027894..2028976 + 360 158521706 - Dole_1695 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1690 57.48 0 2029076..2030218 + 380 158521707 - Dole_1696 - histidine kinase 1691 58.63 0 2030458..2030706 + 82 158521708 - Dole_1697 - AbrB family transcriptional regulator 1692 51.00 0 2030703..2031104 + 133 158521709 - Dole_1698 - PilT domain-containing protein 1693 45.59 -1 2031469..2031672 + 67 158521710 - Dole_1699 - hypothetical protein 1694 47.94 -1 2031644..2031910 + 88 158521711 - Dole_1700 - addiction module antitoxin 1695 51.05 0 2032334..2032858 - 174 158521712 - Dole_1701 - hypothetical protein 1696 31.73 -2 2032953..2033513 - 186 158521713 - Dole_1702 - hypothetical protein 1697 55.32 0 2033679..2039963 - 2094 158521714 - Dole_1703 - YD repeat-/RHS repeat-containing protein 1698 49.18 -1 2040043..2045310 - 1755 158521715 - Dole_1704 - polymorphic outer membrane protein 1699 60.11 0 2045873..2049397 + 1174 158521716 - Dole_1705 - transcription-repair coupling factor 1700 53.93 0 2049426..2050124 + 232 158521717 - Dole_1706 - SurA domain-containing protein 1701 54.78 0 2050187..2051137 + 316 158521718 - Dole_1707 - PpiC-type peptidyl-prolyl cis-trans isomerase 1702 55.73 0 2051187..2051945 + 252 158521719 - Dole_1708 - hypothetical protein 1703 57.85 0 2052012..2052794 + 260 158521720 - Dole_1709 - DNA repair protein RecO 1704 60.21 0 2052873..2053925 + 350 158521721 - Dole_1710 - GHMP kinase 1705 56.81 0 2054073..2054975 + 300 158521722 - Dole_1711 - glycyl-tRNA synthetase subunit alpha 1706 59.60 0 2054972..2057080 + 702 158521723 - Dole_1712 - glycyl-tRNA synthetase, beta subunit 1707 56.08 0 2057130..2057384 + 84 158521724 - Dole_1713 - hypothetical protein 1708 61.68 0 2057438..2058199 + 253 158521725 - Dole_1714 - purine phosphorylase family 1 1709 61.01 0 2058184..2060232 + 682 158521726 - Dole_1715 - DNA ligase, NAD-dependent 1710 61.35 0 2060248..2060529 + 93 158521727 - Dole_1716 - acylphosphatase 1711 49.08 -1 2060636..2060908 - 90 158521728 - Dole_1717 - histone family protein DNA-binding protein 1712 59.95 0 2061247..2062392 - 381 158521729 - Dole_1718 - signal recognition particle-docking protein FtsY 1713 57.46 0 2062433..2066047 - 1204 158521730 - Dole_1719 - chromosome segregation protein SMC 1714 51.43 0 2066736..2067503 + 255 158521731 - Dole_1720 - N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase 1715 50.00 -1 2067503..2068288 + 261 158521732 - Dole_1721 - glycosyl transferase family protein 1716 54.61 0 2068304..2069356 - 350 158521733 - Dole_1722 - radical SAM domain-containing protein 1717 53.90 0 2069384..2069665 - 93 158521734 - Dole_1723 - hypothetical protein 1718 53.81 0 2069832..2070539 + 235 158521735 - Dole_1724 - hypothetical protein 1719 60.99 0 2070605..2071027 - 140 158521736 - Dole_1725 - class I peptide chain release factor 1720 58.38 0 2071062..2072858 - 598 158521737 - Dole_1726 - GTP-binding protein LepA 1721 57.64 0 2072973..2073947 - 324 158521738 - Dole_1727 - rhomboid family protein 1722 60.93 0 2073982..2074818 - 278 158521739 - Dole_1728 - nicotinate-nucleotide pyrophosphorylase 1723 60.56 0 2074946..2077600 - 884 158521740 - Dole_1729 - valyl-tRNA synthetase 1724 46.50 -1 2077648..2077890 - 80 158521741 - Dole_1730 - hypothetical protein 1725 53.68 0 2077905..2079890 - 661 158521742 - Dole_1731 - ATPase 1726 60.03 0 2080097..2080834 + 245 158521743 - Dole_1732 - hypothetical protein 1727 56.09 0 2081143..2083383 + 746 158521744 - Dole_1733 - hypothetical protein 1728 60.05 0 2083588..2085084 - 498 158521745 - Dole_1734 - cobyric acid synthase CobQ 1729 62.01 0 2085081..2085767 - 228 158521746 - Dole_1735 - TonB family protein 1730 61.19 0 2085784..2086203 - 139 158521747 - Dole_1736 - biopolymer transport protein ExbD/TolR 1731 64.69 +1 2086219..2086824 - 201 158521748 - Dole_1737 - MotA/TolQ/ExbB proton channel 1732 60.77 0 2086821..2088551 - 576 158521749 - Dole_1738 - MotA/TolQ/ExbB proton channel 1733 60.62 0 2089047..2090006 + 319 158521750 - Dole_1739 - signal peptide peptidase SppA, 36K type 1734 60.05 0 2090020..2090865 - 281 158521751 - Dole_1740 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1735 57.33 0 2090964..2092088 - 374 158521752 - Dole_1741 - diguanylate cyclase 56.47 MEAN 5.93 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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