IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1571	 58.70	0	1877971..1878723	-	250	158521588	-	Dole_1577	-	peptidylprolyl isomerase FKBP-type
1572	 60.03	0	1878829..1880637	-	602	158521589	-	Dole_1578	-	TPR repeat-containing serine/threonin protein kinase
1573	 59.08	0	1880793..1881596	+	267	158521590	-	Dole_1579	-	hypothetical protein
1574	 55.14	0	1881723..1882598	+	291	158521591	-	Dole_1580	-	hypothetical protein
1575	 58.22	0	1882601..1883038	+	145	158521592	-	Dole_1581	-	hypothetical protein
1576	 57.34	0	1883079..1885382	+	767	158521593	-	Dole_1582	-	TPR repeat-containing protein
1577	 55.15	0	1885419..1886564	+	381	158521594	-	Dole_1583	-	hypothetical protein
1578	 56.93	0	1886735..1887874	+	379	158521595	-	Dole_1584	-	aspartate aminotransferase
1579	 61.72	0	1887861..1889276	+	471	158521596	-	Dole_1585	-	RNA methyltransferase
1580	 58.23	0	1889325..1889810	-	161	158521597	-	Dole_1586	-	hypothetical protein
1581	 58.40	0	1890252..1890626	+	124	158521598	-	Dole_1587	-	hypothetical protein
1582	 55.51	0	1890684..1891409	+	241	158521599	-	Dole_1588	-	type IV pilus assembly PilZ
1583	 59.96	0	1891475..1892368	+	297	158521600	-	Dole_1589	-	alpha/beta hydrolase fold
1584	 58.45	0	1892435..1893298	+	287	158521601	-	Dole_1590	-	nitroreductase
1585	 55.41	0	1893428..1893889	+	153	158521602	-	Dole_1591	-	putative lipoprotein
1586	 62.43	+1	1893912..1895114	+	400	158521603	-	Dole_1592	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1587	 55.70	0	1895186..1895878	-	230	158521604	-	Dole_1593	-	hypothetical protein
1588	 51.60	0	1896064..1896375	+	103	158521605	-	Dole_1594	-	hypothetical protein
1589	 60.33	0	1896391..1898079	-	562	158521606	-	Dole_1595	-	glutaminyl-tRNA synthetase
1590	 61.15	0	1898449..1899246	-	265	158521607	-	Dole_1596	-	hypothetical protein
1591	 57.41	0	1899462..1900304	+	280	158521608	-	Dole_1597	-	hypothetical protein
1592	 62.69	+1	1900647..1902179	+	510	158521609	-	Dole_1598	-	mercuric reductase
1593	 50.96	0	1902258..1902779	-	173	158521610	-	Dole_1599	-	acetyltransferase/acyltransferase
1594	 49.94	-1	1902785..1903651	-	288	158521611	-	Dole_1600	-	TetR family transcriptional regulator
1595	 57.19	0	1903942..1905123	+	393	158521612	-	Dole_1601	-	Acetyl-CoA acetyltransferase-like protein
1596	 49.31	-1	1905124..1905555	+	143	158521613	-	Dole_1602	-	hypothetical protein
1597	 56.64	0	1905565..1906332	+	255	158521614	-	Dole_1603	-	enoyl-CoA hydratase/isomerase
1598	 54.98	0	1906346..1907509	+	387	158521615	-	Dole_1604	-	acyl-CoA dehydrogenase domain-containing protein
1599	 55.34	0	1907526..1909106	+	526	158521616	-	Dole_1605	-	AMP-dependent synthetase and ligase
1600	 53.27	0	1909220..1910578	+	452	158521617	-	Dole_1606	-	NADH:flavin oxidoreductase/NADH oxidase
1601	 55.86	0	1910680..1911678	+	332	158521618	-	Dole_1607	-	amidohydrolase 2
1602	 57.13	0	1911691..1912518	+	275	158521619	-	Dole_1608	-	short-chain dehydrogenase/reductase SDR
1603	 51.37	0	1912542..1913234	+	230	158521620	-	Dole_1609	-	hypothetical protein
1604	 53.53	0	1913305..1915260	+	651	158521621	-	Dole_1610	-	acetoacetyl-CoA synthase
1605	 53.95	0	1915566..1916312	+	248	158521622	-	Dole_1611	-	hypothetical protein
1606	 63.50	+1	1916317..1917642	+	441	158521623	-	Dole_1612	-	glycosyl transferase family protein
1607	 52.01	0	1917887..1918459	+	190	158521624	-	Dole_1613	-	hypothetical protein
1608	 50.19	-1	1918597..1918857	+	86	158521625	-	Dole_1614	-	hypothetical protein
1609	 57.64	0	1918916..1919602	-	228	158521626	-	Dole_1615	-	response regulator receiver protein
1610	 62.26	0	1919775..1920341	+	188	158521627	-	Dole_1616	-	hypothetical protein
1611	 60.99	0	1920338..1922380	+	680	158521628	-	Dole_1617	-	translation elongation factor G
1612	 56.46	0	1922539..1923459	+	306	158521629	-	Dole_1618	-	alpha/beta hydrolase domain-containing protein
1613	 60.27	0	1923473..1925581	-	702	158521630	-	Dole_1619	-	hypothetical protein
1614	 55.32	0	1925903..1926325	+	140	158521631	-	Dole_1620	-	MarR family transcriptional regulator
1615	 62.12	0	1926385..1928625	+	746	158521632	-	Dole_1621	-	nitrate reductase
1616	 48.97	-1	1928900..1929238	+	112	158521633	-	Dole_1622	-	type IV pilus assembly PilZ
1617	 50.89	0	1929341..1929904	+	187	158521634	-	Dole_1623	-	hypothetical protein
1618	 42.17	-2	1930387..1931868	+	493	158521635	-	Dole_1624	-	DnaJ central domain-containing protein
1619	 37.46	-2	1931979..1932851	+	290	158521636	-	Dole_1625	-	hypothetical protein
1620	 38.92	-2	1932916..1933470	+	184	158521637	-	Dole_1626	-	hypothetical protein
1621	 63.48	+1	1933714..1935690	-	658	158521638	-	Dole_1627	-	ABC transporter-related protein
1622	 61.06	0	1935841..1936821	-	326	158521639	-	Dole_1628	-	RND family efflux transporter MFP subunit
1623	 63.55	+1	1936802..1938118	-	438	158521640	-	Dole_1629	-	outer membrane efflux protein
1624	 57.40	0	1938386..1939810	-	474	158521641	-	Dole_1630	-	peptidase M48 Ste24p
1625	 59.09	0	1939930..1940721	+	263	158521642	-	Dole_1631	-	cobyrinic acid ac-diamide synthase
1626	 62.20	0	1940724..1941641	+	305	158521643	-	Dole_1632	-	parB-like partition protein
1627	 60.04	0	1941931..1942458	+	175	158521644	-	Dole_1633	-	hypothetical protein
1628	 59.70	0	1942689..1944080	-	463	158521645	-	Dole_1634	-	hypothetical protein
1629	 55.25	0	1944101..1944643	-	180	158521646	-	Dole_1635	-	NapC/NirT cytochrome c domain-containing protein
1630	 58.62	0	1945027..1945896	+	289	158521647	-	Dole_1636	-	dimethyladenosine transferase
1631	 58.82	0	1945899..1946306	+	135	158521648	-	Dole_1637	-	hypothetical protein
1632	 59.55	0	1946303..1947244	+	313	158521649	-	Dole_1638	-	radical SAM domain-containing protein
1633	 62.06	0	1947265..1948197	+	310	158521650	-	Dole_1639	-	TPR repeat-containing protein
1634	 57.25	0	1948266..1949486	+	406	158521651	-	Dole_1640	-	MscS mechanosensitive ion channel
1635	 61.70	0	1949517..1950281	+	254	158521652	-	Dole_1641	-	cyclase family protein
1636	 56.55	0	1950313..1951350	+	345	158521653	-	Dole_1642	-	enoyl-CoA hydratase/isomerase
1637	 60.75	0	1951350..1952498	+	382	158521654	-	Dole_1643	-	saccharopine dehydrogenase
1638	 58.93	0	1952509..1953141	+	210	158521655	-	Dole_1644	-	metal dependent phosphohydrolase
1639	 58.37	0	1953179..1953937	+	252	158521656	-	Dole_1645	-	phosphoribosylglycinamide formyltransferase
1640	 59.85	0	1954134..1956332	+	732	158521657	-	Dole_1646	-	catalase/peroxidase HPI
1641	 58.48	0	1956431..1957786	-	451	158521658	-	Dole_1647	-	glutamate dehydrogenase
1642	 52.23	0	1957891..1958472	-	193	158521659	-	Dole_1648	-	hypothetical protein
1643	 62.57	+1	1958747..1960186	-	479	158521660	-	Dole_1649	-	two component, sigma54 specific, Fis family transcriptional regulator
1644	 59.71	0	1960192..1962030	-	612	158521661	-	Dole_1650	-	histidine kinase
1645	 61.61	0	1962085..1962915	-	276	158521662	-	Dole_1651	-	ABC transporter-related protein
1646	 64.43	+1	1962912..1963985	-	357	158521663	-	Dole_1652	-	transport system permease protein
1647	 58.91	0	1964000..1965160	-	386	158521664	-	Dole_1653	-	periplasmic binding protein
1648	 60.18	0	1965543..1967807	-	754	158521665	-	Dole_1654	-	O-antigen polymerase
1649	 44.44	-2	1968243..1968539	-	98	158521666	-	Dole_1655	-	excinuclease ABC subunit C
1650	 58.37	0	1968731..1969417	-	228	158521667	-	Dole_1656	-	protein-tyrosine-phosphatase
1651	 54.66	0	1969414..1971579	-	721	158521668	-	Dole_1657	-	non-specific protein-tyrosine kinase
1652	 54.80	0	1971698..1972531	-	277	158521669	-	Dole_1658	-	polysaccharide export protein
1653	 52.46	0	1972700..1973959	-	419	158521670	-	Dole_1659	-	hypothetical protein
1654	 57.80	0	1974273..1976348	-	691	158521671	-	Dole_1660	-	translation elongation factor G
1655	 63.64	+1	1976451..1977209	-	252	158521672	-	Dole_1661	-	hemolysin A
1656	 61.19	0	1977295..1979175	-	626	158521673	-	Dole_1662	-	deoxyxylulose-5-phosphate synthase
1657	 60.02	0	1979186..1980073	-	295	158521674	-	Dole_1663	-	polyprenyl synthetase
1658	 53.25	0	1980060..1980305	-	81	158521675	-	Dole_1664	-	exodeoxyribonuclease VII, small subunit
1659	 60.36	0	1980486..1981832	-	448	158521676	-	Dole_1665	-	exodeoxyribonuclease VII, large subunit
1660	 63.31	+1	1982046..1982552	+	168	158521677	-	Dole_1666	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1661	 56.94	0	1982616..1984055	+	479	158521678	-	Dole_1667	-	cysteinyl-tRNA synthetase
1662	 63.33	+1	1984359..1985138	+	259	158521679	-	Dole_1668	-	hypothetical protein
1663	 55.01	0	1985493..1986101	+	202	158521680	-	Dole_1669	-	putative GAF sensor protein
1664	 53.91	0	1986299..1986745	+	148	158521681	-	Dole_1670	-	BLUF domain-containing protein
1665	 51.15	0	1987119..1987769	+	216	158521682	-	Dole_1671	-	hypothetical protein
1666	 58.35	0	1987807..1989633	-	608	158521683	-	Dole_1672	-	AMP-dependent synthetase and ligase
1667	 61.34	0	1990000..1991145	+	381	158521684	-	Dole_1673	-	peptidase M24
1668	 59.62	0	1991142..1992035	+	297	158521685	-	Dole_1674	-	tyrosine recombinase XerD
1669	 61.83	0	1992248..1993921	+	557	158521686	-	Dole_1675	-	PfaD family protein
1670	 61.11	0	1994060..2000629	+	2189	158521687	-	Dole_1676	-	polyketide-type polyunsaturated fatty acid synthase, PfaA
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.