IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1504	 57.57	0	1802261..1803865	+	534	158521521	-	Dole_1510	-	WD40 domain-containing protein
1505	 57.56	0	1804001..1804933	+	310	158521522	-	Dole_1511	-	diacylglycerol kinase catalytic region
1506	 61.61	0	1805179..1806108	-	309	158521523	-	Dole_1512	-	thioredoxin reductase
1507	 55.45	0	1806113..1806442	-	109	158521524	-	Dole_1513	-	thioredoxin
1508	 55.25	0	1806890..1808203	+	437	158521525	-	Dole_1514	-	diguanylate phosphodiesterase
1509	 57.67	0	1808490..1809167	+	225	158521526	-	Dole_1515	-	phosphoribosylaminoimidazolecarboxamide formyltransferase
1510	 58.91	0	1809202..1810452	+	416	158521527	-	Dole_1516	-	phosphoribosylaminoimidazolecarboxamide formyltransferase
1511	 56.03	0	1810503..1810850	+	115	158521528	-	Dole_1517	-	hydrogenase nickel insertion protein HypA
1512	 58.07	0	1810975..1812021	+	348	158521529	-	Dole_1518	-	hypothetical protein
1513	 60.94	0	1812018..1813100	+	360	158521530	-	Dole_1519	-	A/G-specific adenine glycosylase
1514	 58.95	0	1813134..1815467	-	777	158521531	-	Dole_1520	-	PAS/PAC sensor hybrid histidine kinase
1515	 51.55	0	1815500..1816015	-	171	158521532	-	Dole_1521	-	hypothetical protein
1516	 57.22	0	1816064..1816846	-	260	158521533	-	Dole_1522	-	TPR repeat-containing protein
1517	 58.95	0	1816956..1817810	-	284	158521534	-	Dole_1523	-	NADPH-dependent FMN reductase
1518	 57.00	0	1817952..1818965	-	337	158521535	-	Dole_1524	-	radical SAM domain-containing protein
1519	 60.22	0	1818946..1819767	-	273	158521536	-	Dole_1525	-	methyltransferase type 11
1520	 61.61	0	1819976..1821043	+	355	158521537	-	Dole_1526	-	2-nitropropane dioxygenase NPD
1521	 58.96	0	1821046..1822887	-	613	158521538	-	Dole_1527	-	peptidase M48 Ste24p
1522	 57.19	0	1822979..1823569	-	196	158521539	-	Dole_1528	-	LemA family protein
1523	 60.63	0	1823614..1824243	-	209	158521540	-	Dole_1529	-	rubredoxin-type Fe(Cys)4 protein
1524	 52.38	0	1824294..1824503	-	69	158521541	-	Dole_1530	-	hypothetical protein
1525	 59.30	0	1824615..1825184	-	189	158521542	-	Dole_1531	-	hypothetical protein
1526	 59.40	0	1825181..1827106	-	641	158521543	-	Dole_1532	-	hypothetical protein
1527	 58.43	0	1827103..1828461	-	452	158521544	-	Dole_1533	-	cyclic nucleotide-binding protein
1528	 58.04	0	1828579..1829436	-	285	158521545	-	Dole_1534	-	alpha/beta hydrolase fold
1529	 57.16	0	1829463..1830293	-	276	158521546	-	Dole_1535	-	Fe-S cluster domain-containing protein
1530	 53.73	0	1830474..1830929	-	151	158521547	-	Dole_1536	-	rubrerythrin
1531	 63.95	+1	1830959..1831732	-	257	158521548	-	Dole_1537	-	formate dehydrogenase family accessory protein FdhD
1532	 56.76	0	1831760..1832314	-	184	158521549	-	Dole_1538	-	hypothetical protein
1533	 55.99	0	1832327..1832710	-	127	158521550	-	Dole_1539	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1534	 56.33	0	1832738..1833946	-	402	158521551	-	Dole_1540	-	methyltransferase type 11
1535	 57.63	0	1834167..1835228	+	353	158521552	-	Dole_1541	-	methionine-R-sulfoxide reductase
1536	 60.56	0	1835242..1836846	-	534	158521553	-	Dole_1542	-	TPR repeat-containing protein
1537	 59.11	0	1836882..1838402	-	506	158521554	-	Dole_1543	-	hypothetical protein
1538	 62.73	+1	1838491..1839252	-	253	158521555	-	Dole_1544	-	phosphotransferase KptA/Tpt1
1539	 63.40	+1	1839342..1840625	+	427	158521556	-	Dole_1545	-	glutamate-1-semialdehyde-2,1-aminomutase
1540	 59.71	0	1840668..1842305	-	545	158521557	-	Dole_1546	-	histidine kinase
1541	 58.81	0	1842302..1843306	-	334	158521558	-	Dole_1547	-	hypothetical protein
1542	 53.62	0	1843619..1844239	+	206	158521559	-	Dole_1548	-	TetR family transcriptional regulator
1543	 57.06	0	1844331..1846463	+	710	158521560	-	Dole_1549	-	short-chain dehydrogenase/reductase SDR
1544	 55.62	0	1846529..1849270	+	913	158521561	-	Dole_1550	-	short-chain dehydrogenase/reductase SDR
1545	 57.70	0	1849283..1850497	+	404	158521562	-	Dole_1551	-	acetyl-CoA acetyltransferase
1546	 59.13	0	1850573..1851727	+	384	158521563	-	Dole_1552	-	acyl-CoA dehydrogenase domain-containing protein
1547	 60.03	0	1851747..1852892	+	381	158521564	-	Dole_1553	-	acyl-CoA dehydrogenase domain-containing protein
1548	 58.05	0	1853024..1854172	+	382	158521565	-	Dole_1554	-	L-carnitine dehydratase/bile acid-inducible protein F
1549	 60.25	0	1854172..1854810	+	212	158521566	-	Dole_1555	-	succinate dehydrogenase/fumarate reductase cytochrome b subunit
1550	 60.71	0	1854832..1856745	+	637	158521567	-	Dole_1556	-	succinate dehydrogenase flavoprotein subunit
1551	 60.19	0	1856745..1857500	+	251	158521568	-	Dole_1557	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
1552	 62.62	+1	1857497..1858114	+	205	158521569	-	Dole_1558	-	hypothetical protein
1553	 59.65	0	1858359..1858985	+	208	158521570	-	Dole_1559	-	hypothetical protein
1554	 52.16	0	1859189..1859836	+	215	158521571	-	Dole_1560	-	hypothetical protein
1555	 60.03	0	1860062..1860799	+	245	158521572	-	Dole_1561	-	ABC transporter-related protein
1556	 57.22	0	1860783..1861703	+	306	158521573	-	Dole_1562	-	SufBD protein
1557	 59.40	0	1861786..1862583	-	265	158521574	-	Dole_1563	-	tryptophan synthase, alpha subunit
1558	 63.55	+1	1862587..1863807	-	406	158521575	-	Dole_1564	-	tryptophan synthase subunit beta
1559	 59.36	0	1863807..1864490	-	227	158521576	-	Dole_1565	-	phosphoribosylanthranilate isomerase
1560	 57.32	0	1864591..1865382	-	263	158521577	-	Dole_1566	-	indole-3-glycerol-phosphate synthase
1561	 59.31	0	1865387..1866406	-	339	158521578	-	Dole_1567	-	anthranilate phosphoribosyltransferase
1562	 59.04	0	1866430..1866993	-	187	158521579	-	Dole_1568	-	glutamine amidotransferase of anthranilate synthase
1563	 60.08	0	1867098..1868585	-	495	158521580	-	Dole_1569	-	anthranilate synthase
1564	 62.00	0	1869079..1870320	+	413	158521581	-	Dole_1570	-	competence/damage-inducible protein CinA
1565	 61.49	0	1870400..1871578	+	392	158521582	-	Dole_1571	-	amidohydrolase
1566	 56.14	0	1871791..1872018	+	75	158521583	-	Dole_1572	-	hypothetical protein
1567	 59.82	0	1872027..1873385	-	452	158521584	-	Dole_1573	-	hydroxypyruvate reductase
1568	 59.82	0	1873651..1874205	+	184	158521585	-	Dole_1574	-	hypothetical protein
1569	 56.20	0	1874541..1876814	+	757	158521586	-	Dole_1575	-	hypothetical protein
1570	 59.30	0	1876884..1877657	+	257	158521587	-	Dole_1576	-	cobyrinic acid ac-diamide synthase
1571	 58.70	0	1877971..1878723	-	250	158521588	-	Dole_1577	-	peptidylprolyl isomerase FKBP-type
1572	 60.03	0	1878829..1880637	-	602	158521589	-	Dole_1578	-	TPR repeat-containing serine/threonin protein kinase
1573	 59.08	0	1880793..1881596	+	267	158521590	-	Dole_1579	-	hypothetical protein
1574	 55.14	0	1881723..1882598	+	291	158521591	-	Dole_1580	-	hypothetical protein
1575	 58.22	0	1882601..1883038	+	145	158521592	-	Dole_1581	-	hypothetical protein
1576	 57.34	0	1883079..1885382	+	767	158521593	-	Dole_1582	-	TPR repeat-containing protein
1577	 55.15	0	1885419..1886564	+	381	158521594	-	Dole_1583	-	hypothetical protein
1578	 56.93	0	1886735..1887874	+	379	158521595	-	Dole_1584	-	aspartate aminotransferase
1579	 61.72	0	1887861..1889276	+	471	158521596	-	Dole_1585	-	RNA methyltransferase
1580	 58.23	0	1889325..1889810	-	161	158521597	-	Dole_1586	-	hypothetical protein
1581	 58.40	0	1890252..1890626	+	124	158521598	-	Dole_1587	-	hypothetical protein
1582	 55.51	0	1890684..1891409	+	241	158521599	-	Dole_1588	-	type IV pilus assembly PilZ
1583	 59.96	0	1891475..1892368	+	297	158521600	-	Dole_1589	-	alpha/beta hydrolase fold
1584	 58.45	0	1892435..1893298	+	287	158521601	-	Dole_1590	-	nitroreductase
1585	 55.41	0	1893428..1893889	+	153	158521602	-	Dole_1591	-	putative lipoprotein
1586	 62.43	+1	1893912..1895114	+	400	158521603	-	Dole_1592	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1587	 55.70	0	1895186..1895878	-	230	158521604	-	Dole_1593	-	hypothetical protein
1588	 51.60	0	1896064..1896375	+	103	158521605	-	Dole_1594	-	hypothetical protein
1589	 60.33	0	1896391..1898079	-	562	158521606	-	Dole_1595	-	glutaminyl-tRNA synthetase
1590	 61.15	0	1898449..1899246	-	265	158521607	-	Dole_1596	-	hypothetical protein
1591	 57.41	0	1899462..1900304	+	280	158521608	-	Dole_1597	-	hypothetical protein
1592	 62.69	+1	1900647..1902179	+	510	158521609	-	Dole_1598	-	mercuric reductase
1593	 50.96	0	1902258..1902779	-	173	158521610	-	Dole_1599	-	acetyltransferase/acyltransferase
1594	 49.94	-1	1902785..1903651	-	288	158521611	-	Dole_1600	-	TetR family transcriptional regulator
1595	 57.19	0	1903942..1905123	+	393	158521612	-	Dole_1601	-	Acetyl-CoA acetyltransferase-like protein
1596	 49.31	-1	1905124..1905555	+	143	158521613	-	Dole_1602	-	hypothetical protein
1597	 56.64	0	1905565..1906332	+	255	158521614	-	Dole_1603	-	enoyl-CoA hydratase/isomerase
1598	 54.98	0	1906346..1907509	+	387	158521615	-	Dole_1604	-	acyl-CoA dehydrogenase domain-containing protein
1599	 55.34	0	1907526..1909106	+	526	158521616	-	Dole_1605	-	AMP-dependent synthetase and ligase
1600	 53.27	0	1909220..1910578	+	452	158521617	-	Dole_1606	-	NADH:flavin oxidoreductase/NADH oxidase
1601	 55.86	0	1910680..1911678	+	332	158521618	-	Dole_1607	-	amidohydrolase 2
1602	 57.13	0	1911691..1912518	+	275	158521619	-	Dole_1608	-	short-chain dehydrogenase/reductase SDR
1603	 51.37	0	1912542..1913234	+	230	158521620	-	Dole_1609	-	hypothetical protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.