IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1445	 46.87	-1	1730103..1731860	+	585	158521462	-	Dole_1451	-	TPR repeat-containing protein
1446	 61.27	0	1731916..1733343	-	475	158521463	-	Dole_1452	-	major facilitator transporter
1447	 59.62	0	1733383..1736916	-	1177	158521464	-	Dole_1453	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1448	 60.08	0	1737161..1737661	+	166	158521465	-	Dole_1454	-	MarR family transcriptional regulator
1449	 61.84	0	1737717..1739624	+	635	158521466	-	Dole_1455	-	NADH:flavin oxidoreductase/NADH oxidase
1450	 66.28	+1	1739661..1740434	+	257	158521467	-	Dole_1456	-	enoyl-CoA hydratase
1451	 56.57	0	1740449..1740646	+	65	158521468	-	Dole_1457	-	hypothetical protein
1452	 62.18	0	1740711..1741223	-	170	158521469	-	Dole_1458	-	thioesterase superfamily protein
1453	 60.19	0	1741258..1742322	-	354	158521470	-	Dole_1459	-	aminoglycoside phosphotransferase
1454	 53.29	0	1742629..1743129	+	166	158521471	-	Dole_1460	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1455	 54.44	0	1743547..1745517	+	656	158521472	-	Dole_1461	-	carbon-monoxide dehydrogenase, catalytic subunit
1456	 59.43	0	1745703..1747595	+	630	158521473	-	Dole_1462	-	asparagine synthase (glutamine-hydrolyzing)
1457	 57.37	0	1747845..1748780	+	311	158521474	-	Dole_1463	-	glutamate--cysteine ligase GCS2
1458	 54.02	0	1748777..1749037	+	86	158521475	-	Dole_1464	-	glutaredoxin 3
1459	 58.95	0	1749215..1751158	+	647	158521476	-	Dole_1465	-	ferredoxin
1460	 53.94	0	1751286..1753100	+	604	158521477	-	Dole_1466	-	hypothetical protein
1461	 61.86	0	1753113..1754006	-	297	158521478	-	Dole_1467	-	NAD-dependent epimerase/dehydratase
1462	 56.62	0	1754179..1754994	-	271	158521479	-	Dole_1468	-	beta-lactamase domain-containing protein
1463	 59.73	0	1755076..1756041	-	321	158521480	-	Dole_1469	-	beta-lactamase domain-containing protein
1464	 62.21	0	1756083..1758863	-	926	158521481	-	Dole_1470	-	NifA subfamily transcriptional regulator
1465	 53.61	0	1758964..1759323	+	119	158521482	-	Dole_1471	-	hypothetical protein
1466	 61.48	0	1759517..1760770	+	417	158521483	-	Dole_1472	-	Propanoyl-CoA C-acyltransferase
1467	 59.03	0	1760904..1762514	+	536	158521484	-	Dole_1473	-	AMP-dependent synthetase and ligase
1468	 59.30	0	1762579..1763583	+	334	158521485	-	Dole_1474	-	nitroreductase
1469	 56.05	0	1763730..1764539	+	269	158521486	-	Dole_1475	-	short-chain dehydrogenase/reductase SDR
1470	 61.28	0	1764688..1766208	+	506	158521487	-	Dole_1476	-	acetyl-CoA acetyltransferase
1471	 42.54	-2	1766238..1766552	-	104	158521488	-	Dole_1477	-	hypothetical protein
1472	 44.44	-2	1766566..1766826	-	86	158521489	-	Dole_1478	-	hypothetical protein
1473	 39.49	-2	1766992..1767186	-	64	158521490	-	Dole_1479	-	hypothetical protein
1474	 50.91	0	1767572..1769329	-	585	158521491	-	Dole_1480	-	radical SAM domain-containing protein
1475	 62.50	+1	1769690..1770049	-	119	158521492	-	Dole_1481	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
1476	 56.65	0	1770066..1770674	-	202	158521493	-	Dole_1482	-	hypothetical protein
1477	 64.01	+1	1770950..1771663	-	237	158521494	-	Dole_1483	-	hypothetical protein
1478	 44.88	-1	1772152..1773147	-	331	158521495	-	Dole_1484	-	hypothetical protein
1479	 61.21	0	1773194..1774807	-	537	158521496	-	Dole_1485	-	iron-sulfur cluster binding protein
1480	 53.93	0	1774835..1775674	-	279	158521497	-	Dole_1486	-	metal-dependent hydrolase
1481	 60.14	0	1775744..1776601	-	285	158521498	-	Dole_1487	-	ribosomal L11 methyltransferase
1482	 57.71	0	1776605..1777363	-	252	158521499	-	Dole_1488	-	cobyrinic acid ac-diamide synthase
1483	 59.34	0	1777593..1778165	+	190	158521500	-	Dole_1489	-	SH3 type 3 domain-containing protein
1484	 59.72	0	1778196..1779821	+	541	158521501	-	Dole_1490	-	L-aspartate oxidase
1485	 57.79	0	1779825..1780556	-	243	158521502	-	Dole_1491	-	ubiquinone/menaquinone biosynthesis methyltransferase
1486	 58.38	0	1780684..1781781	+	365	158521503	-	Dole_1492	-	chaperone protein DnaJ
1487	 54.36	0	1781835..1782224	+	129	158521504	-	Dole_1493	-	putative 6-pyruvoyl tetrahydropterin synthase
1488	 62.23	0	1782221..1783144	+	307	158521505	-	Dole_1494	-	beta-lactamase domain-containing protein
1489	 61.51	0	1783141..1784052	+	303	158521506	-	Dole_1495	-	dihydroorotate dehydrogenase family protein
1490	 50.67	0	1784142..1785341	+	399	158521507	-	Dole_1496	-	NADH:flavin oxidoreductase/NADH oxidase
1491	 53.03	0	1785539..1787680	-	713	158521508	-	Dole_1497	-	molydopterin dinucleotide-binding region
1492	 54.00	0	1787765..1788214	-	149	158521509	-	Dole_1498	-	thioesterase superfamily protein
1493	 56.92	0	1788636..1790543	+	635	158521510	-	Dole_1499	-	AMP-dependent synthetase and ligase
1494	 54.66	0	1790776..1791849	-	357	158521511	-	Dole_1500	-	diguanylate cyclase
1495	 59.55	0	1792143..1793168	-	341	158521512	-	Dole_1501	-	radical SAM domain-containing protein
1496	 60.63	0	1793165..1793860	-	231	158521513	-	Dole_1502	-	ribonuclease III
1497	 56.84	0	1793876..1794760	-	294	158521514	-	Dole_1503	-	phosphotransferase domain-containing protein
1498	 53.99	0	1794750..1795112	-	120	158521515	-	Dole_1504	-	TraR/DksA family transcriptional regulator
1499	 55.91	0	1795313..1795963	+	216	158521516	-	Dole_1505	-	hypothetical protein
1500	 61.67	0	1796092..1796931	+	279	158521517	-	Dole_1506	-	short-chain dehydrogenase/reductase SDR
1501	 61.59	0	1796928..1798307	-	459	158521518	-	Dole_1507	-	hypothetical protein
1502	 60.91	0	1798304..1801153	-	949	158521519	-	Dole_1508	-	hypothetical protein
1503	 57.59	0	1801382..1802218	+	278	158521520	-	Dole_1509	-	response regulator receiver protein
1504	 57.57	0	1802261..1803865	+	534	158521521	-	Dole_1510	-	WD40 domain-containing protein
1505	 57.56	0	1804001..1804933	+	310	158521522	-	Dole_1511	-	diacylglycerol kinase catalytic region
1506	 61.61	0	1805179..1806108	-	309	158521523	-	Dole_1512	-	thioredoxin reductase
1507	 55.45	0	1806113..1806442	-	109	158521524	-	Dole_1513	-	thioredoxin
1508	 55.25	0	1806890..1808203	+	437	158521525	-	Dole_1514	-	diguanylate phosphodiesterase
1509	 57.67	0	1808490..1809167	+	225	158521526	-	Dole_1515	-	phosphoribosylaminoimidazolecarboxamide formyltransferase
1510	 58.91	0	1809202..1810452	+	416	158521527	-	Dole_1516	-	phosphoribosylaminoimidazolecarboxamide formyltransferase
1511	 56.03	0	1810503..1810850	+	115	158521528	-	Dole_1517	-	hydrogenase nickel insertion protein HypA
1512	 58.07	0	1810975..1812021	+	348	158521529	-	Dole_1518	-	hypothetical protein
1513	 60.94	0	1812018..1813100	+	360	158521530	-	Dole_1519	-	A/G-specific adenine glycosylase
1514	 58.95	0	1813134..1815467	-	777	158521531	-	Dole_1520	-	PAS/PAC sensor hybrid histidine kinase
1515	 51.55	0	1815500..1816015	-	171	158521532	-	Dole_1521	-	hypothetical protein
1516	 57.22	0	1816064..1816846	-	260	158521533	-	Dole_1522	-	TPR repeat-containing protein
1517	 58.95	0	1816956..1817810	-	284	158521534	-	Dole_1523	-	NADPH-dependent FMN reductase
1518	 57.00	0	1817952..1818965	-	337	158521535	-	Dole_1524	-	radical SAM domain-containing protein
1519	 60.22	0	1818946..1819767	-	273	158521536	-	Dole_1525	-	methyltransferase type 11
1520	 61.61	0	1819976..1821043	+	355	158521537	-	Dole_1526	-	2-nitropropane dioxygenase NPD
1521	 58.96	0	1821046..1822887	-	613	158521538	-	Dole_1527	-	peptidase M48 Ste24p
1522	 57.19	0	1822979..1823569	-	196	158521539	-	Dole_1528	-	LemA family protein
1523	 60.63	0	1823614..1824243	-	209	158521540	-	Dole_1529	-	rubredoxin-type Fe(Cys)4 protein
1524	 52.38	0	1824294..1824503	-	69	158521541	-	Dole_1530	-	hypothetical protein
1525	 59.30	0	1824615..1825184	-	189	158521542	-	Dole_1531	-	hypothetical protein
1526	 59.40	0	1825181..1827106	-	641	158521543	-	Dole_1532	-	hypothetical protein
1527	 58.43	0	1827103..1828461	-	452	158521544	-	Dole_1533	-	cyclic nucleotide-binding protein
1528	 58.04	0	1828579..1829436	-	285	158521545	-	Dole_1534	-	alpha/beta hydrolase fold
1529	 57.16	0	1829463..1830293	-	276	158521546	-	Dole_1535	-	Fe-S cluster domain-containing protein
1530	 53.73	0	1830474..1830929	-	151	158521547	-	Dole_1536	-	rubrerythrin
1531	 63.95	+1	1830959..1831732	-	257	158521548	-	Dole_1537	-	formate dehydrogenase family accessory protein FdhD
1532	 56.76	0	1831760..1832314	-	184	158521549	-	Dole_1538	-	hypothetical protein
1533	 55.99	0	1832327..1832710	-	127	158521550	-	Dole_1539	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1534	 56.33	0	1832738..1833946	-	402	158521551	-	Dole_1540	-	methyltransferase type 11
1535	 57.63	0	1834167..1835228	+	353	158521552	-	Dole_1541	-	methionine-R-sulfoxide reductase
1536	 60.56	0	1835242..1836846	-	534	158521553	-	Dole_1542	-	TPR repeat-containing protein
1537	 59.11	0	1836882..1838402	-	506	158521554	-	Dole_1543	-	hypothetical protein
1538	 62.73	+1	1838491..1839252	-	253	158521555	-	Dole_1544	-	phosphotransferase KptA/Tpt1
1539	 63.40	+1	1839342..1840625	+	427	158521556	-	Dole_1545	-	glutamate-1-semialdehyde-2,1-aminomutase
1540	 59.71	0	1840668..1842305	-	545	158521557	-	Dole_1546	-	histidine kinase
1541	 58.81	0	1842302..1843306	-	334	158521558	-	Dole_1547	-	hypothetical protein
1542	 53.62	0	1843619..1844239	+	206	158521559	-	Dole_1548	-	TetR family transcriptional regulator
1543	 57.06	0	1844331..1846463	+	710	158521560	-	Dole_1549	-	short-chain dehydrogenase/reductase SDR
1544	 55.62	0	1846529..1849270	+	913	158521561	-	Dole_1550	-	short-chain dehydrogenase/reductase SDR
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.