IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1373	 53.92	0	1642015..1642218	-	67	158521390	-	Dole_1379	-	hypothetical protein
1374	 51.49	0	1642234..1642938	-	234	158521391	-	Dole_1380	-	hypothetical protein
1375	 46.94	-1	1643022..1643462	-	146	158521392	-	Dole_1381	-	membrane protein-like protein
1376	 47.29	-1	1643548..1644321	-	257	158521393	-	Dole_1382	-	hypothetical protein
1377	 46.71	-1	1644338..1644838	-	166	158521394	-	Dole_1383	-	hypothetical protein
1378	 51.37	0	1645605..1646957	+	450	158521395	-	Dole_1384	-	transposase IS4 family protein
1379	 45.51	-1	1647210..1647521	-	103	158521396	-	Dole_1385	-	XRE family plasmid maintenance system antidote protein
1380	 44.44	-2	1647534..1647812	-	92	158521397	-	Dole_1386	-	plasmid maintenance system killer
1381	 51.79	0	1648109..1648666	-	185	158521398	-	Dole_1387	-	hypothetical protein
1382	 32.68	-2	1648874..1649947	-	357	158521399	-	Dole_1388	-	hypothetical protein
1383	 35.67	-2	1650309..1650608	-	99	158521400	-	Dole_1389	-	hypothetical protein
1384	 41.20	-2	1651177..1651392	-	71	158521401	-	Dole_1390	-	hypothetical protein
1385	 62.53	+1	1653023..1653916	-	297	158521402	-	Dole_1391	-	thiamine pyrophosphate binding domain-containing protein
1386	 64.06	+1	1654315..1655505	-	396	158521403	-	Dole_1392	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1387	 60.33	0	1655786..1656085	-	99	158521404	-	Dole_1393	-	pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
1388	 60.78	0	1656090..1656650	-	186	158521405	-	Dole_1394	-	pyruvate/ketoisovalerate oxidoreductase, gamma subunit
1389	 61.53	0	1657003..1658520	-	505	158521406	-	Dole_1395	-	glycerol kinase
1390	 60.93	0	1658517..1659353	-	278	158521407	-	Dole_1396	-	dihydrodipicolinate reductase
1391	 59.55	0	1659808..1660833	+	341	158521408	-	Dole_1397	-	hypothetical protein
1392	 54.30	0	1660992..1661282	+	96	158521409	-	Dole_1398	-	antibiotic biosynthesis monooxygenase
1393	 60.19	0	1661303..1662367	+	354	158521410	-	Dole_1399	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
1394	 62.70	+1	1662364..1665240	+	958	158521411	-	Dole_1400	-	peptidase M16 domain-containing protein
1395	 57.59	0	1665411..1666589	+	392	158521412	-	Dole_1401	-	cystathionine gamma-synthase
1396	 57.29	0	1666636..1668213	+	525	158521413	-	Dole_1402	-	beta-lactamase domain-containing protein
1397	 61.55	0	1668353..1670149	+	598	158521414	-	Dole_1403	-	hypothetical protein
1398	 55.49	0	1670162..1670707	+	181	158521415	-	Dole_1404	-	hypothetical protein
1399	 59.24	0	1670709..1671233	+	174	158521416	-	Dole_1405	-	hypothetical protein
1400	 61.10	0	1671263..1672879	+	538	158521417	-	Dole_1406	-	type II and III secretion system protein
1401	 57.15	0	1672883..1674175	+	430	158521418	-	Dole_1407	-	type II secretory pathway ATPase ExeA
1402	 60.90	0	1674201..1675934	+	577	158521419	-	Dole_1408	-	type II secretion system protein E
1403	 58.05	0	1675941..1677158	+	405	158521420	-	Dole_1409	-	type II secretion system protein
1404	 49.28	-1	1677292..1677705	+	137	158521421	-	Dole_1410	-	hypothetical protein
1405	 56.70	0	1677887..1680013	+	708	158521422	-	Dole_1411	-	TPR repeat-containing protein
1406	 54.95	0	1680001..1680828	+	275	158521423	-	Dole_1412	-	prolipoprotein diacylglyceryl transferase
1407	 51.80	0	1680986..1681624	+	212	158521424	-	Dole_1413	-	hypothetical protein
1408	 59.27	0	1681614..1685492	-	1292	158521425	-	Dole_1414	-	hypothetical protein
1409	 59.77	0	1685495..1685929	-	144	158521426	-	Dole_1415	-	hypothetical protein
1410	 56.31	0	1685926..1686543	-	205	158521427	-	Dole_1416	-	hypothetical protein
1411	 57.62	0	1686680..1688746	+	688	158521428	-	Dole_1417	-	hypothetical protein
1412	 56.33	0	1688820..1689593	+	257	158521429	-	Dole_1418	-	electron transfer flavoprotein alpha/beta-subunit
1413	 59.81	0	1689593..1690555	+	320	158521430	-	Dole_1419	-	electron transfer flavoprotein alpha subunit
1414	 55.39	0	1690646..1692277	-	543	158521431	-	Dole_1420	-	putative PAS/PAC sensor protein
1415	 58.46	0	1692281..1693888	-	535	158521432	-	Dole_1421	-	putative PAS/PAC sensor protein
1416	 56.56	0	1694221..1695150	+	309	158521433	-	Dole_1422	-	chaperone DnaJ domain-containing protein
1417	 53.18	0	1695253..1695786	+	177	158521434	-	Dole_1423	-	hypoxanthine phosphoribosyltransferase
1418	 58.02	0	1695812..1697719	+	635	158521435	-	Dole_1424	-	Zinc finger-domain-containing protein
1419	 59.64	0	1697974..1698357	+	127	158521436	-	Dole_1425	-	hypothetical protein
1420	 63.27	+1	1698381..1699322	+	313	158521437	-	Dole_1426	-	D-alanine--D-alanine ligase
1421	 62.44	+1	1699399..1701174	+	591	158521438	-	Dole_1427	-	phosphoribosylamine--glycine ligase
1422	 63.13	+1	1701131..1701808	+	225	158521439	-	Dole_1428	-	Sua5/YciO/YrdC/YwlC family protein
1423	 60.04	0	1701996..1702916	+	306	158521440	-	Dole_1429	-	beta-lactamase domain-containing protein
1424	 59.45	0	1703062..1704294	+	410	158521441	-	Dole_1430	-	major facilitator transporter
1425	 57.91	0	1704393..1705568	+	391	158521442	-	Dole_1431	-	permease YjgP/YjgQ family protein
1426	 58.24	0	1705565..1706644	+	359	158521443	-	Dole_1432	-	permease YjgP/YjgQ family protein
1427	 60.61	0	1706664..1709042	+	792	158521444	-	Dole_1433	-	tetraacyldisaccharide 4'-kinase
1428	 54.28	0	1709194..1710000	+	268	158521445	-	Dole_1434	-	hypothetical protein
1429	 50.87	0	1710104..1710907	+	267	158521446	-	Dole_1435	-	FkbM family methyltransferase
1430	 48.64	-1	1710963..1712177	-	404	158521447	-	Dole_1436	-	O-antigen polymerase
1431	 56.21	0	1712188..1713249	-	353	158521448	-	Dole_1437	-	glycosyl transferase group 1
1432	 53.37	0	1713255..1714277	-	340	158521449	-	Dole_1438	-	hypothetical protein
1433	 52.84	0	1714317..1715162	-	281	158521450	-	Dole_1439	-	hypothetical protein
1434	 55.30	0	1715201..1716652	-	483	158521451	-	Dole_1440	-	glycosyl transferase family protein
1435	 49.70	-1	1716696..1717031	-	111	158521452	-	Dole_1441	-	GtrA family protein
1436	 53.14	0	1717048..1717986	-	312	158521453	-	Dole_1442	-	glycosyl transferase family protein
1437	 63.19	+1	1717986..1719137	-	383	158521454	-	Dole_1443	-	glycosyl transferase group 1
1438	 58.85	0	1719113..1720033	-	306	158521455	-	Dole_1444	-	nucleoside-diphosphate-sugar epimerase
1439	 59.32	0	1720089..1721000	-	303	158521456	-	Dole_1445	-	lipid A biosynthesis acyltransferase
1440	 61.82	0	1721408..1724608	+	1066	158521457	-	Dole_1446	-	carbamoyl phosphate synthase large subunit
1441	 56.99	0	1724913..1725470	+	185	158521458	-	Dole_1447	-	hypothetical protein
1442	 55.20	0	1725537..1726103	+	188	158521459	-	Dole_1448	-	hypothetical protein
1443	 64.49	+1	1726396..1727958	+	520	158521460	-	Dole_1449	-	hypothetical protein
1444	 62.39	0	1727951..1729375	+	474	158521461	-	Dole_1450	-	GTP-binding protein HSR1-related
1445	 46.87	-1	1730103..1731860	+	585	158521462	-	Dole_1451	-	TPR repeat-containing protein
1446	 61.27	0	1731916..1733343	-	475	158521463	-	Dole_1452	-	major facilitator transporter
1447	 59.62	0	1733383..1736916	-	1177	158521464	-	Dole_1453	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1448	 60.08	0	1737161..1737661	+	166	158521465	-	Dole_1454	-	MarR family transcriptional regulator
1449	 61.84	0	1737717..1739624	+	635	158521466	-	Dole_1455	-	NADH:flavin oxidoreductase/NADH oxidase
1450	 66.28	+1	1739661..1740434	+	257	158521467	-	Dole_1456	-	enoyl-CoA hydratase
1451	 56.57	0	1740449..1740646	+	65	158521468	-	Dole_1457	-	hypothetical protein
1452	 62.18	0	1740711..1741223	-	170	158521469	-	Dole_1458	-	thioesterase superfamily protein
1453	 60.19	0	1741258..1742322	-	354	158521470	-	Dole_1459	-	aminoglycoside phosphotransferase
1454	 53.29	0	1742629..1743129	+	166	158521471	-	Dole_1460	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1455	 54.44	0	1743547..1745517	+	656	158521472	-	Dole_1461	-	carbon-monoxide dehydrogenase, catalytic subunit
1456	 59.43	0	1745703..1747595	+	630	158521473	-	Dole_1462	-	asparagine synthase (glutamine-hydrolyzing)
1457	 57.37	0	1747845..1748780	+	311	158521474	-	Dole_1463	-	glutamate--cysteine ligase GCS2
1458	 54.02	0	1748777..1749037	+	86	158521475	-	Dole_1464	-	glutaredoxin 3
1459	 58.95	0	1749215..1751158	+	647	158521476	-	Dole_1465	-	ferredoxin
1460	 53.94	0	1751286..1753100	+	604	158521477	-	Dole_1466	-	hypothetical protein
1461	 61.86	0	1753113..1754006	-	297	158521478	-	Dole_1467	-	NAD-dependent epimerase/dehydratase
1462	 56.62	0	1754179..1754994	-	271	158521479	-	Dole_1468	-	beta-lactamase domain-containing protein
1463	 59.73	0	1755076..1756041	-	321	158521480	-	Dole_1469	-	beta-lactamase domain-containing protein
1464	 62.21	0	1756083..1758863	-	926	158521481	-	Dole_1470	-	NifA subfamily transcriptional regulator
1465	 53.61	0	1758964..1759323	+	119	158521482	-	Dole_1471	-	hypothetical protein
1466	 61.48	0	1759517..1760770	+	417	158521483	-	Dole_1472	-	Propanoyl-CoA C-acyltransferase
1467	 59.03	0	1760904..1762514	+	536	158521484	-	Dole_1473	-	AMP-dependent synthetase and ligase
1468	 59.30	0	1762579..1763583	+	334	158521485	-	Dole_1474	-	nitroreductase
1469	 56.05	0	1763730..1764539	+	269	158521486	-	Dole_1475	-	short-chain dehydrogenase/reductase SDR
1470	 61.28	0	1764688..1766208	+	506	158521487	-	Dole_1476	-	acetyl-CoA acetyltransferase
1471	 42.54	-2	1766238..1766552	-	104	158521488	-	Dole_1477	-	hypothetical protein
1472	 44.44	-2	1766566..1766826	-	86	158521489	-	Dole_1478	-	hypothetical protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.