IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
94	 37.83	-2	103072..104205	+	377	158520111	-	Dole_0094	-	DNA polymerase III, beta subunit
95	 47.57	-1	104210..106654	+	814	158520112	-	Dole_0095	-	DNA gyrase, B subunit
96	 56.20	0	106651..107988	-	445	158520113	-	Dole_0096	-	asparaginyl-tRNA synthetase
97	 60.35	0	108032..110485	+	817	158520114	-	Dole_0097	-	radical SAM domain-containing protein
98	 57.21	0	110589..112142	+	517	158520115	-	Dole_0098	-	ribonuclease
99	 51.11	0	112349..112483	+	44	158520116	-	Dole_0099	-	ribosomal protein L34
100	 47.54	-1	112621..112986	+	121	158520117	-	Dole_0100	-	ribonuclease P protein component
101	 55.38	0	112986..113180	+	64	158520118	-	Dole_0101	-	hypothetical protein
102	 57.98	0	113359..115038	+	559	158520119	-	Dole_0102	-	60 kDa inner membrane insertion protein
103	 61.60	0	115053..116078	+	341	158520120	-	Dole_0103	-	single-stranded nucleic acid binding R3H domain-containing protein
104	 66.59	+1	116099..117487	+	462	158520121	-	Dole_0104	-	tRNA modification GTPase TrmE
105	 52.78	0	117620..118303	+	227	158520122	-	Dole_0105	-	hypothetical protein
106	 56.91	0	118300..118668	+	122	158520123	-	Dole_0106	-	hypothetical protein
107	 61.86	0	118655..119527	+	290	158520124	-	Dole_0107	-	ribosomal L11 methyltransferase
108	 56.00	0	119524..120198	+	224	158520125	-	Dole_0108	-	hypothetical protein
109	 57.16	0	120309..121034	-	241	158520126	-	Dole_0109	-	hypothetical protein
110	 55.76	0	121442..121936	+	164	158520127	-	Dole_0110	-	hypothetical protein
111	 57.41	0	121952..122761	+	269	158520128	-	Dole_0111	-	RimK domain-containing protein ATP-grasp
112	 60.21	0	122992..124710	-	572	158520129	-	Dole_0112	-	AMP-dependent synthetase and ligase
113	 60.66	0	124751..126148	-	465	158520130	-	Dole_0113	-	Propanoyl-CoA C-acyltransferase
114	 55.17	0	126600..127382	+	260	158520131	-	Dole_0114	-	regulatory protein GntR HTH
115	 56.87	0	127402..128238	+	278	158520132	-	Dole_0115	-	short-chain dehydrogenase/reductase SDR
116	 59.82	0	128291..129049	+	252	158520133	-	Dole_0116	-	nitroreductase
117	 60.05	0	129053..129430	+	125	158520134	-	Dole_0117	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
118	 53.85	0	129618..130499	+	293	158520135	-	Dole_0118	-	hypothetical protein
119	 58.77	0	130561..131370	+	269	158520136	-	Dole_0119	-	GCN5-related N-acetyltransferase
120	 60.80	0	131723..132865	+	380	158520137	-	Dole_0120	-	carbamoyl-phosphate synthase, small subunit
121	 61.52	0	132858..136085	+	1075	158520138	-	Dole_0121	-	carbamoyl-phosphate synthase, large subunit
122	 61.82	0	136082..137485	+	467	158520139	-	Dole_0122	-	amidophosphoribosyltransferase
123	 39.16	-2	137939..138916	-	325	158520140	-	Dole_0123	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
124	 34.45	-2	139017..139463	-	148	158520141	-	Dole_0124	-	MarR family transcriptional regulator
125	 58.24	0	139717..140736	+	339	158520142	-	Dole_0125	-	hypothetical protein
126	 61.76	0	140761..142818	+	685	158520143	-	Dole_0126	-	formate dehydrogenase
127	 50.92	0	143290..143562	+	90	158520144	-	Dole_0127	-	hypothetical protein
128	 58.23	0	143604..144326	+	240	158520145	-	Dole_0128	-	1-acylglycerol-3-phosphate O-acyltransferase
129	 61.92	0	144424..145266	+	280	158520146	-	Dole_0129	-	pyrroline-5-carboxylate reductase
130	 60.41	0	145259..145945	+	228	158520147	-	Dole_0130	-	cytochrome c biogenesis protein transmembrane region
131	 56.89	0	146077..146526	+	149	158520148	-	Dole_0131	-	thioredoxin domain-containing protein
132	 58.84	0	146529..147116	+	195	158520149	-	Dole_0132	-	NUDIX hydrolase
133	 63.54	+1	147111..147398	-	95	158520150	-	Dole_0133	-	hypothetical protein
134	 55.77	0	147419..147877	-	152	158520151	-	Dole_0134	-	GCN5-related N-acetyltransferase
135	 62.44	+1	148111..150051	-	646	158520152	-	Dole_0135	-	1A family penicillin-binding protein
136	 57.24	0	150159..150455	+	98	158520153	-	Dole_0136	-	hypothetical protein
137	 61.94	0	150540..151301	+	253	158520154	-	Dole_0137	-	ATP-grasp domain-containing protein
138	 61.19	0	151327..152805	+	492	158520155	-	Dole_0138	-	CoA-binding domain-containing protein
139	 57.36	0	152951..153283	+	110	158520156	-	Dole_0139	-	Hpt protein
140	 57.35	0	153335..154450	+	371	158520157	-	Dole_0140	-	response regulator receiver protein
141	 60.87	0	154594..155076	+	160	158520158	-	Dole_0141	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
142	 60.45	0	155249..156262	+	337	158520159	-	Dole_0142	-	hypothetical protein
143	 60.14	0	156282..157124	+	280	158520160	-	Dole_0143	-	amidohydrolase 2
144	 56.92	0	157358..158896	-	512	158520161	-	Dole_0144	-	hypothetical protein
145	 60.27	0	159138..159731	-	197	158520162	-	Dole_0145	-	hypothetical protein
146	 36.01	-2	159793..160650	-	285	158520163	-	Dole_0146	-	hypothetical protein
147	 48.61	-1	160632..161135	-	167	158520164	-	Dole_0147	-	hypothetical protein
148	 59.74	0	161253..162740	-	495	158520165	-	Dole_0148	-	transglutaminase domain-containing protein
149	 64.47	+1	162933..164750	-	605	158520166	-	Dole_0149	-	DNA mismatch repair protein MutL
150	 59.26	0	164810..164998	-	62	158520167	-	Dole_0150	-	hypothetical protein
151	 63.18	+1	165014..166474	-	486	158520168	-	Dole_0151	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
152	 54.17	0	166507..166794	-	95	158520169	-	Dole_0152	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
153	 59.33	0	166953..168641	+	562	158520170	-	Dole_0153	-	hypothetical protein
154	 55.08	0	168653..169213	-	186	158520171	-	Dole_0154	-	hypothetical protein
155	 58.48	0	169729..172134	+	801	158520172	-	Dole_0155	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
156	 61.60	0	172147..173331	+	394	158520173	-	Dole_0156	-	acetyl-CoA acetyltransferase
157	 61.77	0	173580..174560	+	326	158520174	-	Dole_0157	-	NAD-dependent epimerase/dehydratase
158	 54.08	0	174557..175009	+	150	158520175	-	Dole_0158	-	hypothetical protein
159	 50.21	-1	175179..175652	+	157	158520176	-	Dole_0159	-	UspA domain-containing protein
160	 54.81	0	175844..176248	+	134	158520177	-	Dole_0160	-	UspA domain-containing protein
161	 57.88	0	176276..177982	-	568	158520178	-	Dole_0161	-	TrkA domain-containing protein
162	 58.16	0	178152..179702	+	516	158520179	-	Dole_0162	-	CoA-binding domain-containing protein
163	 61.10	0	179699..181978	+	759	158520180	-	Dole_0163	-	RNA-binding S1 domain-containing protein
164	 45.98	-1	182182..184158	+	658	158520181	-	Dole_0164	-	AMP-dependent synthetase and ligase
165	 58.56	0	184295..184627	+	110	158520182	-	Dole_0165	-	TfoX domain-containing protein
166	 54.03	0	184693..186132	+	479	158520183	-	Dole_0166	-	amidase
167	 40.19	-2	186392..187033	-	213	158520184	-	Dole_0167	-	TetR family transcriptional regulator
168	 44.96	-1	187230..188261	+	343	158520185	-	Dole_0168	-	enoyl-CoA hydratase/isomerase
169	 53.79	0	188285..189154	+	289	158520186	-	Dole_0169	-	short-chain dehydrogenase/reductase SDR
170	 49.24	-1	189216..189542	+	108	158520187	-	Dole_0170	-	DNA-binding protein
171	 59.32	0	189575..191494	-	639	158520188	-	Dole_0171	-	ABC transporter-related protein
172	 60.74	0	191515..192492	-	325	158520189	-	Dole_0172	-	alpha/beta hydrolase fold
173	 57.45	0	192500..193378	-	292	158520190	-	Dole_0173	-	radical SAM domain-containing protein
174	 57.09	0	193732..194274	+	180	158520191	-	Dole_0174	-	peptidylprolyl isomerase FKBP-type
175	 53.51	0	194367..195065	-	232	158520192	-	Dole_0175	-	TetR family transcriptional regulator
176	 57.48	0	195263..196111	+	282	158520193	-	Dole_0176	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
177	 60.76	0	196133..197182	+	349	158520194	-	Dole_0177	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
178	 56.68	0	197194..198024	+	276	158520195	-	Dole_0178	-	hypothetical protein
179	 55.17	0	198054..198575	+	173	158520196	-	Dole_0179	-	hypothetical protein
180	 48.23	-1	198631..199026	+	131	158520197	-	Dole_0180	-	endoribonuclease L-PSP
181	 56.18	0	199141..200208	+	355	158520198	-	Dole_0181	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
182	 55.32	0	200407..201270	+	287	158520199	-	Dole_0182	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
183	 46.86	-1	201532..202692	+	386	158520200	-	Dole_0183	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
184	 47.22	-1	202839..203846	+	335	158520201	-	Dole_0184	-	TetR family transcriptional regulator
185	 57.80	0	203920..204675	+	251	158520202	-	Dole_0185	-	hypothetical protein
186	 53.25	0	204860..205612	-	250	158520203	-	Dole_0186	-	MerR family transcriptional regulator
187	 58.11	0	205948..206940	+	330	158520204	-	Dole_0187	-	molybdenum cofactor biosynthesis protein A
188	 54.90	0	207128..207331	+	67	158520205	-	Dole_0188	-	twin arginine-targeting protein translocase
189	 51.85	0	207371..208126	-	251	158520206	-	Dole_0189	-	MerR family transcriptional regulator
190	 58.07	0	208138..208707	-	189	158520207	-	Dole_0190	-	formylmethanofuran dehydrogenase subunit E region
191	 54.90	0	208961..209368	+	135	158520208	-	Dole_0191	-	hypothetical protein
192	 57.73	0	209441..210022	+	193	158520209	-	Dole_0192	-	Rieske (2Fe-2S) domain-containing protein
193	 61.48	0	210022..210387	+	121	158520210	-	Dole_0193	-	hypothetical protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.