IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
74	 60.33	0	82431..83597	-	388	158520091	-	Dole_0074	-	succinyl-CoA synthetase, beta subunit
75	 60.26	0	83597..85642	-	681	158520092	-	Dole_0075	-	hypothetical protein
76	 58.87	0	85681..85911	-	76	158520093	-	Dole_0076	-	hypothetical protein
77	 59.52	0	85930..87483	-	517	158520094	-	Dole_0077	-	carboxyl transferase
78	 62.95	+1	87606..88601	-	331	158520095	-	Dole_0078	-	LAO/AO transport system ATPase
79	 61.81	0	88777..90897	-	706	158520096	-	Dole_0079	-	methylmalonyl-CoA mutase
80	 55.39	0	90941..91348	-	135	158520097	-	Dole_0080	-	glyoxalase/bleomycin resistance protein/dioxygenase
81	 60.10	0	91385..92572	-	395	158520098	-	Dole_0081	-	aspartate aminotransferase
82	 56.45	0	92860..93045	+	61	158520099	-	Dole_0082	-	hypothetical protein
83	 63.71	+1	93215..94264	+	349	158520100	-	Dole_0083	-	queuosine biosynthesis protein
84	 63.46	+1	94358..95512	+	384	158520101	-	Dole_0084	-	queuine tRNA-ribosyltransferase
85	 56.16	0	95607..95825	+	72	158520102	-	Dole_0085	-	NifU domain-containing protein
86	 53.33	0	95992..96306	+	104	158520103	-	Dole_0086	-	ribosomal protein L21
87	 60.32	0	96368..96619	+	83	158520104	-	Dole_0087	-	50S ribosomal protein L27
88	 61.18	0	96616..97617	+	333	158520105	-	Dole_0088	-	GTP-binding protein Obg/CgtA
89	 60.48	0	97607..98737	+	376	158520106	-	Dole_0089	-	glutamate 5-kinase
90	 61.97	0	98775..100031	+	418	158520107	-	Dole_0090	-	gamma-glutamyl phosphate reductase
91	 53.51	0	100059..100727	+	222	158520108	-	Dole_0091	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
92	 54.78	0	100724..101068	+	114	158520109	-	Dole_0092	-	iojap-like protein
93	 51.56	0	101094..102629	+	511	158520110	-	Dole_0093	-	phosphoglyceromutase
94	 37.83	-2	103072..104205	+	377	158520111	-	Dole_0094	-	DNA polymerase III, beta subunit
95	 47.57	-1	104210..106654	+	814	158520112	-	Dole_0095	-	DNA gyrase, B subunit
96	 56.20	0	106651..107988	-	445	158520113	-	Dole_0096	-	asparaginyl-tRNA synthetase
97	 60.35	0	108032..110485	+	817	158520114	-	Dole_0097	-	radical SAM domain-containing protein
98	 57.21	0	110589..112142	+	517	158520115	-	Dole_0098	-	ribonuclease
99	 51.11	0	112349..112483	+	44	158520116	-	Dole_0099	-	ribosomal protein L34
100	 47.54	-1	112621..112986	+	121	158520117	-	Dole_0100	-	ribonuclease P protein component
101	 55.38	0	112986..113180	+	64	158520118	-	Dole_0101	-	hypothetical protein
102	 57.98	0	113359..115038	+	559	158520119	-	Dole_0102	-	60 kDa inner membrane insertion protein
103	 61.60	0	115053..116078	+	341	158520120	-	Dole_0103	-	single-stranded nucleic acid binding R3H domain-containing protein
104	 66.59	+1	116099..117487	+	462	158520121	-	Dole_0104	-	tRNA modification GTPase TrmE
105	 52.78	0	117620..118303	+	227	158520122	-	Dole_0105	-	hypothetical protein
106	 56.91	0	118300..118668	+	122	158520123	-	Dole_0106	-	hypothetical protein
107	 61.86	0	118655..119527	+	290	158520124	-	Dole_0107	-	ribosomal L11 methyltransferase
108	 56.00	0	119524..120198	+	224	158520125	-	Dole_0108	-	hypothetical protein
109	 57.16	0	120309..121034	-	241	158520126	-	Dole_0109	-	hypothetical protein
110	 55.76	0	121442..121936	+	164	158520127	-	Dole_0110	-	hypothetical protein
111	 57.41	0	121952..122761	+	269	158520128	-	Dole_0111	-	RimK domain-containing protein ATP-grasp
112	 60.21	0	122992..124710	-	572	158520129	-	Dole_0112	-	AMP-dependent synthetase and ligase
113	 60.66	0	124751..126148	-	465	158520130	-	Dole_0113	-	Propanoyl-CoA C-acyltransferase
114	 55.17	0	126600..127382	+	260	158520131	-	Dole_0114	-	regulatory protein GntR HTH
115	 56.87	0	127402..128238	+	278	158520132	-	Dole_0115	-	short-chain dehydrogenase/reductase SDR
116	 59.82	0	128291..129049	+	252	158520133	-	Dole_0116	-	nitroreductase
117	 60.05	0	129053..129430	+	125	158520134	-	Dole_0117	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
118	 53.85	0	129618..130499	+	293	158520135	-	Dole_0118	-	hypothetical protein
119	 58.77	0	130561..131370	+	269	158520136	-	Dole_0119	-	GCN5-related N-acetyltransferase
120	 60.80	0	131723..132865	+	380	158520137	-	Dole_0120	-	carbamoyl-phosphate synthase, small subunit
121	 61.52	0	132858..136085	+	1075	158520138	-	Dole_0121	-	carbamoyl-phosphate synthase, large subunit
122	 61.82	0	136082..137485	+	467	158520139	-	Dole_0122	-	amidophosphoribosyltransferase
123	 39.16	-2	137939..138916	-	325	158520140	-	Dole_0123	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
124	 34.45	-2	139017..139463	-	148	158520141	-	Dole_0124	-	MarR family transcriptional regulator
125	 58.24	0	139717..140736	+	339	158520142	-	Dole_0125	-	hypothetical protein
126	 61.76	0	140761..142818	+	685	158520143	-	Dole_0126	-	formate dehydrogenase
127	 50.92	0	143290..143562	+	90	158520144	-	Dole_0127	-	hypothetical protein
128	 58.23	0	143604..144326	+	240	158520145	-	Dole_0128	-	1-acylglycerol-3-phosphate O-acyltransferase
129	 61.92	0	144424..145266	+	280	158520146	-	Dole_0129	-	pyrroline-5-carboxylate reductase
130	 60.41	0	145259..145945	+	228	158520147	-	Dole_0130	-	cytochrome c biogenesis protein transmembrane region
131	 56.89	0	146077..146526	+	149	158520148	-	Dole_0131	-	thioredoxin domain-containing protein
132	 58.84	0	146529..147116	+	195	158520149	-	Dole_0132	-	NUDIX hydrolase
133	 63.54	+1	147111..147398	-	95	158520150	-	Dole_0133	-	hypothetical protein
134	 55.77	0	147419..147877	-	152	158520151	-	Dole_0134	-	GCN5-related N-acetyltransferase
135	 62.44	+1	148111..150051	-	646	158520152	-	Dole_0135	-	1A family penicillin-binding protein
136	 57.24	0	150159..150455	+	98	158520153	-	Dole_0136	-	hypothetical protein
137	 61.94	0	150540..151301	+	253	158520154	-	Dole_0137	-	ATP-grasp domain-containing protein
138	 61.19	0	151327..152805	+	492	158520155	-	Dole_0138	-	CoA-binding domain-containing protein
139	 57.36	0	152951..153283	+	110	158520156	-	Dole_0139	-	Hpt protein
140	 57.35	0	153335..154450	+	371	158520157	-	Dole_0140	-	response regulator receiver protein
141	 60.87	0	154594..155076	+	160	158520158	-	Dole_0141	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
142	 60.45	0	155249..156262	+	337	158520159	-	Dole_0142	-	hypothetical protein
143	 60.14	0	156282..157124	+	280	158520160	-	Dole_0143	-	amidohydrolase 2
144	 56.92	0	157358..158896	-	512	158520161	-	Dole_0144	-	hypothetical protein
145	 60.27	0	159138..159731	-	197	158520162	-	Dole_0145	-	hypothetical protein
146	 36.01	-2	159793..160650	-	285	158520163	-	Dole_0146	-	hypothetical protein
147	 48.61	-1	160632..161135	-	167	158520164	-	Dole_0147	-	hypothetical protein
148	 59.74	0	161253..162740	-	495	158520165	-	Dole_0148	-	transglutaminase domain-containing protein
149	 64.47	+1	162933..164750	-	605	158520166	-	Dole_0149	-	DNA mismatch repair protein MutL
150	 59.26	0	164810..164998	-	62	158520167	-	Dole_0150	-	hypothetical protein
151	 63.18	+1	165014..166474	-	486	158520168	-	Dole_0151	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
152	 54.17	0	166507..166794	-	95	158520169	-	Dole_0152	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
153	 59.33	0	166953..168641	+	562	158520170	-	Dole_0153	-	hypothetical protein
154	 55.08	0	168653..169213	-	186	158520171	-	Dole_0154	-	hypothetical protein
155	 58.48	0	169729..172134	+	801	158520172	-	Dole_0155	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
156	 61.60	0	172147..173331	+	394	158520173	-	Dole_0156	-	acetyl-CoA acetyltransferase
157	 61.77	0	173580..174560	+	326	158520174	-	Dole_0157	-	NAD-dependent epimerase/dehydratase
158	 54.08	0	174557..175009	+	150	158520175	-	Dole_0158	-	hypothetical protein
159	 50.21	-1	175179..175652	+	157	158520176	-	Dole_0159	-	UspA domain-containing protein
160	 54.81	0	175844..176248	+	134	158520177	-	Dole_0160	-	UspA domain-containing protein
161	 57.88	0	176276..177982	-	568	158520178	-	Dole_0161	-	TrkA domain-containing protein
162	 58.16	0	178152..179702	+	516	158520179	-	Dole_0162	-	CoA-binding domain-containing protein
163	 61.10	0	179699..181978	+	759	158520180	-	Dole_0163	-	RNA-binding S1 domain-containing protein
164	 45.98	-1	182182..184158	+	658	158520181	-	Dole_0164	-	AMP-dependent synthetase and ligase
165	 58.56	0	184295..184627	+	110	158520182	-	Dole_0165	-	TfoX domain-containing protein
166	 54.03	0	184693..186132	+	479	158520183	-	Dole_0166	-	amidase
167	 40.19	-2	186392..187033	-	213	158520184	-	Dole_0167	-	TetR family transcriptional regulator
168	 44.96	-1	187230..188261	+	343	158520185	-	Dole_0168	-	enoyl-CoA hydratase/isomerase
169	 53.79	0	188285..189154	+	289	158520186	-	Dole_0169	-	short-chain dehydrogenase/reductase SDR
170	 49.24	-1	189216..189542	+	108	158520187	-	Dole_0170	-	DNA-binding protein
171	 59.32	0	189575..191494	-	639	158520188	-	Dole_0171	-	ABC transporter-related protein
172	 60.74	0	191515..192492	-	325	158520189	-	Dole_0172	-	alpha/beta hydrolase fold
173	 57.45	0	192500..193378	-	292	158520190	-	Dole_0173	-	radical SAM domain-containing protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.