IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1116	 56.69	0	1329889..1330269	-	126	158521133	-	Dole_1119	-	phosphoribosyl-AMP cyclohydrolase
1117	 61.66	0	1330447..1331025	+	192	158521134	-	Dole_1120	-	hypothetical protein
1118	 55.43	0	1331047..1331322	+	91	158521135	-	Dole_1121	-	hypothetical protein
1119	 57.97	0	1331452..1332750	+	432	158521136	-	Dole_1122	-	methyl-accepting chemotaxis sensory transducer
1120	 58.38	0	1332788..1333861	+	357	158521137	-	Dole_1123	-	diguanylate cyclase
1121	 59.28	0	1333981..1335144	+	387	158521138	-	Dole_1124	-	metal-dependent phosphohydrolase
1122	 58.40	0	1335323..1335685	+	120	158521139	-	Dole_1125	-	hypothetical protein
1123	 61.64	0	1335747..1338392	+	881	158521140	-	Dole_1126	-	DNA mismatch repair protein MutS
1124	 60.58	0	1338389..1340392	+	667	158521141	-	Dole_1127	-	N-acetylmuramoyl-L-alanine amidase
1125	 48.86	-1	1340919..1341356	-	145	158521142	-	Dole_1128	-	hypothetical protein
1126	 57.62	0	1341686..1342459	-	257	158521143	-	Dole_1129	-	hypothetical protein
1127	 60.44	0	1342463..1343473	-	336	158521144	-	Dole_1130	-	transketolase central region
1128	 59.67	0	1343510..1344352	-	280	158521145	-	Dole_1131	-	transketolase domain-containing protein
1129	 62.11	0	1344365..1345615	-	416	158521146	-	Dole_1132	-	aminotransferase class-III
1130	 58.43	0	1345630..1346394	-	254	158521147	-	Dole_1133	-	hypothetical protein
1131	 61.65	0	1346467..1347582	-	371	158521148	-	Dole_1134	-	alanine dehydrogenase
1132	 52.01	0	1347636..1348256	-	206	158521149	-	Dole_1135	-	TetR family transcriptional regulator
1133	 48.42	-1	1348590..1349636	-	348	158521150	-	Dole_1136	-	response regulator receiver modulated metal dependent phosphohydrolase
1134	 49.71	-1	1352718..1353755	-	345	158521151	-	Dole_1138	-	diguanylate cyclase
1135	 59.06	0	1354055..1355224	+	389	158521152	-	Dole_1139	-	iron-containing alcohol dehydrogenase
1136	 44.76	-1	1355430..1355954	-	174	158521153	-	Dole_1140	-	hypothetical protein
1137	 55.13	0	1356477..1358132	+	551	158521154	-	Dole_1141	-	carboxylesterase type B
1138	 48.63	-1	1358206..1359225	+	339	158521155	-	Dole_1142	-	hypothetical protein
1139	 51.87	0	1359252..1360346	+	364	158521156	-	Dole_1143	-	lipase chaperone
1140	 55.28	0	1360361..1361440	+	359	158521157	-	Dole_1144	-	alpha/beta hydrolase fold
1141	 52.30	0	1361474..1363693	+	739	158521158	-	Dole_1145	-	glycoside hydrolase family protein
1142	 56.68	0	1363894..1364514	+	206	158521159	-	Dole_1146	-	adenylate kinase-like kinase
1143	 59.25	0	1364536..1365627	-	363	158521160	-	Dole_1147	-	peptidase M48 Ste24p
1144	 54.85	0	1365638..1366906	-	422	158521161	-	Dole_1148	-	hypothetical protein
1145	 54.96	0	1366976..1367368	-	130	158521162	-	Dole_1149	-	response regulator receiver protein
1146	 61.64	0	1367376..1368470	-	364	158521163	-	Dole_1150	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit
1147	 58.92	0	1368486..1369415	-	309	158521164	-	Dole_1151	-	methylenetetrahydrofolate reductase
1148	 60.09	0	1369412..1370080	-	222	158521165	-	Dole_1152	-	hypothetical protein
1149	 46.18	-1	1370216..1370713	-	165	158521166	-	Dole_1153	-	hypothetical protein
1150	 35.07	-2	1370970..1372292	-	440	158521167	-	Dole_1154	-	ankyrin repeat-containing protein
1151	 30.47	-2	1372445..1372933	-	162	158521168	-	Dole_1155	-	hypothetical protein
1152	 47.72	-1	1372947..1381832	-	2961	158521169	-	Dole_1156	-	YD repeat-containing protein
1153	 63.46	+1	1382013..1382168	-	51	158521170	-	Dole_1157	-	methyl-viologen-reducing hydrogenase, delta subunit
1154	 62.22	0	1382244..1382513	-	89	158521171	-	Dole_1158	-	methyl-viologen-reducing hydrogenase delta subunit
1155	 61.32	0	1382547..1385555	-	1002	158521172	-	Dole_1159	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1156	 59.23	0	1385539..1386426	-	295	158521173	-	Dole_1160	-	CoB--CoM heterodisulfide reductase
1157	 59.31	0	1386682..1387293	-	203	158521174	-	Dole_1161	-	heterodisulfide reductase subunit C-like protein
1158	 53.16	0	1387709..1388611	+	300	158521175	-	Dole_1162	-	phospholipid/glycerol acyltransferase
1159	 62.98	+1	1389233..1389991	+	252	158521176	-	Dole_1163	-	stationary-phase survival protein SurE
1160	 62.31	0	1390005..1390967	+	320	158521177	-	Dole_1164	-	metal dependent phosphohydrolase
1161	 64.34	+1	1390967..1391611	+	214	158521178	-	Dole_1165	-	dTMP kinase
1162	 60.15	0	1391756..1394071	+	771	158521179	-	Dole_1166	-	cysteine synthase
1163	 58.83	0	1394081..1395088	+	335	158521180	-	Dole_1167	-	hypothetical protein
1164	 54.50	0	1395242..1395430	+	62	158521181	-	Dole_1168	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1165	 60.78	0	1395578..1396852	+	424	158521182	-	Dole_1169	-	iron-sulfur cluster binding protein
1166	 56.04	0	1397203..1397757	+	184	158521183	-	Dole_1170	-	methylated-DNA--protein-cysteine methyltransferase
1167	 61.99	0	1397843..1401241	+	1132	158521184	-	Dole_1171	-	UvrD/REP helicase
1168	 54.30	0	1401506..1401877	+	123	158521185	-	Dole_1172	-	hypothetical protein
1169	 55.78	0	1401956..1402543	+	195	158521186	-	Dole_1173	-	lytic transglycosylase catalytic
1170	 62.53	+1	1402723..1403544	+	273	158521187	-	Dole_1174	-	bacitracin resistance protein BacA
1171	 57.74	0	1403654..1404997	+	447	158521188	-	Dole_1175	-	phosphomannomutase
1172	 59.80	0	1405076..1405468	+	130	158521189	-	Dole_1176	-	putative endoribonuclease L-PSP
1173	 58.17	0	1405500..1406123	+	207	158521190	-	Dole_1177	-	maf protein
1174	 57.50	0	1406139..1407458	+	439	158521191	-	Dole_1178	-	radical SAM domain-containing protein
1175	 58.63	0	1407506..1408189	+	227	158521192	-	Dole_1179	-	alanine racemase domain-containing protein
1176	 56.18	0	1408186..1408719	+	177	158521193	-	Dole_1180	-	hypothetical protein
1177	 60.29	0	1408731..1409216	-	161	158521194	-	Dole_1181	-	hypothetical protein
1178	 62.33	0	1409226..1410194	-	322	158521195	-	Dole_1182	-	2-nitropropane dioxygenase NPD
1179	 56.74	0	1410191..1410724	-	177	158521196	-	Dole_1183	-	hypothetical protein
1180	 57.54	0	1411008..1411478	+	156	158521197	-	Dole_1184	-	hypothetical protein
1181	 50.94	0	1412105..1413013	+	302	158521198	-	Dole_1185	-	hypothetical protein
1182	 55.51	0	1413010..1416603	+	1197	158521199	-	Dole_1186	-	TPR repeat-containing protein
1183	 39.91	-2	1416951..1417406	-	151	158521200	-	Dole_1187	-	hypothetical protein
1184	 58.78	0	1417465..1418910	-	481	158521201	-	Dole_1188	-	DNA polymerase III delta
1185	 61.13	0	1418910..1419686	-	258	158521202	-	Dole_1189	-	prolipoprotein diacylglyceryl transferase
1186	 59.63	0	1419691..1420173	-	160	158521203	-	Dole_1190	-	lipoprotein signal peptidase
1187	 60.36	0	1420200..1422989	-	929	158521204	-	Dole_1191	-	isoleucyl-tRNA synthetase
1188	 60.32	0	1423104..1423844	-	246	158521205	-	Dole_1192	-	methyltransferase GidB
1189	 56.52	0	1423846..1425717	-	623	158521206	-	Dole_1193	-	acetyl-CoA hydrolase/transferase
1190	 59.59	0	1426056..1427171	+	371	158521207	-	Dole_1194	-	hypothetical protein
1191	 60.34	0	1427702..1428649	-	315	158521208	-	Dole_1195	-	hypothetical protein
1192	 58.00	0	1428698..1430047	-	449	158521209	-	Dole_1196	-	hypothetical protein
1193	 59.82	0	1430078..1431289	-	403	158521210	-	Dole_1197	-	hypothetical protein
1194	 55.81	0	1431743..1432663	-	306	158521211	-	Dole_1198	-	radical SAM domain-containing protein
1195	 57.22	0	1432689..1433609	-	306	158521212	-	Dole_1199	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
1196	 58.13	0	1433670..1435016	-	448	158521213	-	Dole_1200	-	hypothetical protein
1197	 53.38	0	1435427..1435885	+	152	158521214	-	Dole_1201	-	CBS domain-containing protein
1198	 56.59	0	1435898..1436413	+	171	158521215	-	Dole_1202	-	Lipocalin family protein
1199	 61.93	0	1436479..1437006	+	175	158521216	-	Dole_1203	-	putative regulator
1200	 59.29	0	1437148..1438854	+	568	158521217	-	Dole_1204	-	AMP-dependent synthetase and ligase
1201	 58.90	0	1438851..1439339	+	162	158521218	-	Dole_1205	-	hypothetical protein
1202	 54.81	0	1439396..1439884	+	162	158521219	-	Dole_1206	-	hypothetical protein
1203	 56.48	0	1440429..1441115	-	228	158521220	-	Dole_1207	-	hypothetical protein
1204	 60.63	0	1441112..1442386	-	424	158521221	-	Dole_1208	-	homoserine dehydrogenase
1205	 58.46	0	1442541..1443125	-	194	158521222	-	Dole_1209	-	hypothetical protein
1206	 36.82	-2	1443373..1443831	-	152	158521223	-	Dole_1210	-	hypothetical protein
1207	 35.08	-2	1443911..1444597	-	228	158521224	-	Dole_1211	-	hypothetical protein
1208	 49.94	-1	1444605..1445441	-	278	158521225	-	Dole_1212	-	integrase catalytic region
1209	 48.02	-1	1445486..1445737	-	83	158521226	-	Dole_1213	-	transposase and inactivated derivative
1210	 33.33	-2	1445945..1446409	-	154	158521227	-	Dole_1214	-	hypothetical protein
1211	 59.71	0	1446868..1450146	-	1092	158521228	-	Dole_1215	-	acriflavin resistance protein
1212	 60.44	0	1450143..1451282	-	379	158521229	-	Dole_1216	-	RND family efflux transporter MFP subunit
1213	 61.50	0	1451279..1452595	-	438	158521230	-	Dole_1217	-	outer membrane efflux protein
1214	 57.17	0	1452751..1453371	-	206	158521231	-	Dole_1218	-	TetR family transcriptional regulator
1215	 51.37	0	1453646..1454998	+	450	158521232	-	Dole_1219	-	transposase IS4 family protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.