IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1028	 60.89	0	1212746..1214875	-	709	158521045	-	Dole_1028	-	DEAD/DEAH box helicase domain-containing protein
1029	 59.55	0	1214876..1215634	-	252	158521046	-	Dole_1029	-	cobyrinic acid ac-diamide synthase
1030	 62.71	+1	1215813..1217783	+	656	158521047	-	Dole_1030	-	peptidase U32
1031	 51.23	0	1218035..1218319	+	94	158521048	-	Dole_1031	-	histone family protein DNA-binding protein
1032	 56.71	0	1218416..1218877	+	153	158521049	-	Dole_1032	-	general secretion pathway protein G
1033	 59.52	0	1218951..1219538	+	195	158521050	-	Dole_1033	-	hypothetical protein
1034	 60.56	0	1219525..1219950	+	141	158521051	-	Dole_1034	-	hypothetical protein
1035	 60.78	0	1219928..1220641	+	237	158521052	-	Dole_1035	-	hypothetical protein
1036	 58.01	0	1220638..1221723	+	361	158521053	-	Dole_1036	-	Type II secretory pathway component PulK-like protein
1037	 61.53	0	1221777..1223237	+	486	158521054	-	Dole_1037	-	fimbrial assembly family protein
1038	 60.72	0	1223234..1223788	+	184	158521055	-	Dole_1038	-	hypothetical protein
1039	 58.98	0	1223785..1224669	+	294	158521056	-	Dole_1039	-	hypothetical protein
1040	 58.05	0	1224707..1225588	+	293	158521057	-	Dole_1040	-	PDZ/DHR/GLGF domain-containing protein
1041	 58.38	0	1225639..1228038	+	799	158521058	-	Dole_1041	-	general secretion pathway protein D
1042	 59.08	0	1228042..1229754	+	570	158521059	-	Dole_1042	-	general secretory pathway protein E
1043	 57.79	0	1229751..1230167	+	138	158521060	-	Dole_1043	-	hypothetical protein
1044	 58.41	0	1230184..1231140	+	318	158521061	-	Dole_1044	-	hypothetical protein
1045	 58.05	0	1231217..1232446	-	409	158521062	-	Dole_1045	-	general secretion pathway protein F
1046	 52.88	0	1232505..1232903	-	132	158521063	-	Dole_1046	-	hypothetical protein
1047	 55.72	0	1232942..1234366	-	474	158521064	-	Dole_1047	-	hypothetical protein
1048	 53.37	0	1234654..1237098	-	814	158521065	-	Dole_1048	-	response regulator receiver protein
1049	 58.28	0	1237324..1238313	+	329	158521066	-	Dole_1049	-	hypothetical protein
1050	 59.21	0	1238335..1238991	+	218	158521067	-	Dole_1050	-	hypothetical protein
1051	 53.06	0	1239000..1239359	-	119	158521068	-	Dole_1051	-	type IV pilus assembly PilZ
1052	 58.86	0	1239802..1241517	+	571	158521069	-	Dole_1052	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1053	 60.82	0	1241570..1242133	+	187	158521070	-	Dole_1053	-	carboxymuconolactone decarboxylase
1054	 61.76	0	1242199..1245456	+	1085	158521071	-	Dole_1054	-	exodeoxyribonuclease V, gamma subunit
1055	 62.57	+1	1245434..1249045	+	1203	158521072	-	Dole_1055	-	exodeoxyribonuclease V, beta subunit
1056	 62.30	0	1249047..1250876	+	609	158521073	-	Dole_1056	-	exodeoxyribonuclease V, alpha subunit
1057	 61.97	0	1250892..1251338	+	148	158521074	-	Dole_1057	-	RpiB/LacA/LacB family sugar-phosphate isomerase
1058	 56.10	0	1251379..1252050	-	223	158521075	-	Dole_1058	-	CheC, inhibitor of MCP methylation
1059	 50.00	-1	1252043..1252426	-	127	158521076	-	Dole_1059	-	response regulator receiver protein
1060	 55.49	0	1252647..1253612	-	321	158521077	-	Dole_1060	-	peptidase M23B
1061	 56.92	0	1253861..1254691	+	276	158521078	-	Dole_1061	-	temperature sensitive supressor-like protein
1062	 53.91	0	1254738..1257002	+	754	158521079	-	Dole_1062	-	hypothetical protein
1063	 57.36	0	1257262..1258443	+	393	158521080	-	Dole_1063	-	2-methylcitrate synthase/citrate synthase II
1064	 59.10	0	1258794..1260233	+	479	158521081	-	Dole_1065	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1065	 56.18	0	1260226..1261083	+	285	158521082	-	Dole_1066	-	pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit
1066	 42.53	-2	1261223..1261831	-	202	158521083	-	Dole_1067	-	TetR family transcriptional regulator
1067	 51.16	0	1262321..1263436	+	371	158521084	-	Dole_1068	-	alanine dehydrogenase
1068	 47.82	-1	1263456..1264373	+	305	158521085	-	Dole_1069	-	amidohydrolase 2
1069	 53.87	0	1264439..1265821	+	460	158521086	-	Dole_1070	-	aminotransferase class-III
1070	 53.18	0	1265851..1267059	+	402	158521087	-	Dole_1071	-	aminotransferase class-III
1071	 56.49	0	1267101..1267739	+	212	158521088	-	Dole_1072	-	NADPH-dependent FMN reductase
1072	 47.09	-1	1267973..1270480	+	835	158521089	-	Dole_1073	-	molydopterin dinucleotide-binding region
1073	 50.46	-1	1270566..1272719	+	717	158521090	-	Dole_1074	-	molybdopterin oxidoreductase
1074	 42.62	-2	1272716..1273942	+	408	158521091	-	Dole_1075	-	hypothetical protein
1075	 49.68	-1	1274210..1275622	+	470	158521092	-	Dole_1076	-	amidase
1076	 41.18	-2	1275814..1276119	-	101	158521093	-	Dole_1077	-	hypothetical protein
1077	 46.41	-1	1276490..1276879	+	129	158521094	-	Dole_1078	-	hypothetical protein
1078	 54.66	0	1278372..1279562	-	396	158521095	-	Dole_1081	-	diguanylate cyclase
1079	 59.80	0	1280137..1281432	-	431	158521096	-	Dole_1082	-	hypothetical protein
1080	 60.74	0	1281469..1282953	-	494	158521097	-	Dole_1083	-	hypothetical protein
1081	 60.91	0	1283163..1283996	+	277	158521098	-	Dole_1084	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1082	 59.32	0	1284240..1284947	+	235	158521099	-	Dole_1085	-	methyltransferase type 12
1083	 57.24	0	1285193..1285966	+	257	158521100	-	Dole_1086	-	enoyl-CoA hydratase/isomerase
1084	 61.35	0	1285985..1288411	-	808	158521101	-	Dole_1087	-	TPR repeat-containing protein
1085	 55.26	0	1288694..1289710	-	338	158521102	-	Dole_1088	-	hypothetical protein
1086	 58.04	0	1289707..1290216	-	169	158521103	-	Dole_1089	-	hypothetical protein
1087	 56.32	0	1290213..1292753	-	846	158521104	-	Dole_1090	-	response regulator receiver protein
1088	 55.27	0	1292870..1293106	-	78	158521105	-	Dole_1091	-	hypothetical protein
1089	 51.99	0	1293113..1293439	-	108	158521106	-	Dole_1092	-	response regulator receiver protein
1090	 58.63	0	1293424..1298589	-	1721	158521107	-	Dole_1093	-	multi-sensor hybrid histidine kinase
1091	 64.65	+1	1298905..1300686	-	593	158521108	-	Dole_1094	-	TrkA domain-containing protein
1092	 52.16	0	1300954..1301718	+	254	158521109	-	Dole_1095	-	NERD domain-containing protein
1093	 49.44	-1	1301718..1304903	+	1061	158521110	-	Dole_1096	-	ankyrin
1094	 59.43	0	1305011..1307236	-	741	158521111	-	Dole_1097	-	para-aminobenzoate synthase, subunit I
1095	 56.13	0	1307241..1307876	-	211	158521112	-	Dole_1098	-	glutamine amidotransferase of anthranilate synthase
1096	 59.41	0	1307995..1310448	-	817	158521113	-	Dole_1099	-	ATP-dependent protease La
1097	 55.41	0	1310517..1310969	-	150	158521114	-	Dole_1100	-	heat shock protein Hsp20
1098	 60.92	0	1311170..1312126	+	318	158521115	-	Dole_1101	-	hypothetical protein
1099	 57.10	0	1312212..1313309	+	365	158521116	-	Dole_1102	-	hypothetical protein
1100	 57.11	0	1313895..1314731	-	278	158521117	-	Dole_1103	-	cytochrome c assembly protein
1101	 58.30	0	1314773..1316146	-	457	158521118	-	Dole_1104	-	ResB family protein
1102	 62.86	+1	1316419..1317258	+	279	158521119	-	Dole_1105	-	uroporphyrin-III C/tetrapyrrole methyltransferase
1103	 57.50	0	1317639..1318892	+	417	158521120	-	Dole_1106	-	trimethylamine:corrinoid methyltransferase-like protein
1104	 58.98	0	1318937..1320550	+	537	158521121	-	Dole_1107	-	asparagine synthetase B
1105	 61.72	0	1320559..1321407	+	282	158521122	-	Dole_1108	-	hypothetical protein
1106	 58.72	0	1321425..1322657	+	410	158521123	-	Dole_1109	-	trimethylamine:corrinoid methyltransferase-like protein
1107	 62.84	+1	1322680..1323306	+	208	158521124	-	Dole_1110	-	cobalamin B12-binding domain-containing protein
1108	 60.39	0	1323353..1324786	+	477	158521125	-	Dole_1111	-	trimethylamine methyltransferase
1109	 56.05	0	1324801..1325751	+	316	158521126	-	Dole_1112	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1110	 63.54	+1	1325752..1326327	-	191	158521127	-	Dole_1113	-	transcriptional regulator, TrmB
1111	 57.71	0	1326335..1326613	-	92	158521128	-	Dole_1114	-	HNH endonuclease
1112	 59.40	0	1326637..1327476	-	279	158521129	-	Dole_1115	-	RimK domain-containing protein ATP-grasp
1113	 57.89	0	1327473..1328384	-	303	158521130	-	Dole_1116	-	GTP-binding protein Era
1114	 58.08	0	1328388..1328981	-	197	158521131	-	Dole_1117	-	GTP-binding protein HSR1-related
1115	 58.56	0	1329017..1329892	-	291	158521132	-	Dole_1118	-	ATP phosphoribosyltransferase
1116	 56.69	0	1329889..1330269	-	126	158521133	-	Dole_1119	-	phosphoribosyl-AMP cyclohydrolase
1117	 61.66	0	1330447..1331025	+	192	158521134	-	Dole_1120	-	hypothetical protein
1118	 55.43	0	1331047..1331322	+	91	158521135	-	Dole_1121	-	hypothetical protein
1119	 57.97	0	1331452..1332750	+	432	158521136	-	Dole_1122	-	methyl-accepting chemotaxis sensory transducer
1120	 58.38	0	1332788..1333861	+	357	158521137	-	Dole_1123	-	diguanylate cyclase
1121	 59.28	0	1333981..1335144	+	387	158521138	-	Dole_1124	-	metal-dependent phosphohydrolase
1122	 58.40	0	1335323..1335685	+	120	158521139	-	Dole_1125	-	hypothetical protein
1123	 61.64	0	1335747..1338392	+	881	158521140	-	Dole_1126	-	DNA mismatch repair protein MutS
1124	 60.58	0	1338389..1340392	+	667	158521141	-	Dole_1127	-	N-acetylmuramoyl-L-alanine amidase
1125	 48.86	-1	1340919..1341356	-	145	158521142	-	Dole_1128	-	hypothetical protein
1126	 57.62	0	1341686..1342459	-	257	158521143	-	Dole_1129	-	hypothetical protein
1127	 60.44	0	1342463..1343473	-	336	158521144	-	Dole_1130	-	transketolase central region
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.