IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
958	 56.89	0	1119440..1120360	+	306	158520975	-	Dole_0958	-	hypothetical protein
959	 59.31	0	1120366..1121778	-	470	158520976	-	Dole_0959	-	aspartate kinase
960	 60.51	0	1121788..1122177	-	129	158520977	-	Dole_0960	-	L-ectoine synthase
961	 57.10	0	1122177..1123451	-	424	158520978	-	Dole_0961	-	diaminobutyrate--2-oxoglutarate aminotransferase
962	 59.37	0	1123656..1124162	-	168	158520979	-	Dole_0962	-	L-2,4-diaminobutyric acid acetyltransferase
963	 56.48	0	1124163..1125095	-	310	158520980	-	Dole_0963	-	porphobilinogen deaminase
964	 62.07	0	1125894..1126829	+	311	158520981	-	Dole_0964	-	putative radical SAM protein
965	 53.99	0	1126875..1127087	-	70	158520982	-	Dole_0965	-	hypothetical protein
966	 57.58	0	1127492..1129021	+	509	158520983	-	Dole_0966	-	bifunctional GMP synthase/glutamine amidotransferase protein
967	 58.21	0	1129028..1129819	+	263	158520984	-	Dole_0967	-	hypothetical protein
968	 58.63	0	1129879..1130625	-	248	158520985	-	Dole_0968	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
969	 63.33	+1	1130749..1131498	+	249	158520986	-	Dole_0969	-	hypothetical protein
970	 59.02	0	1131506..1133035	+	509	158520987	-	Dole_0970	-	hypothetical protein
971	 64.64	+1	1133011..1133652	+	213	158520988	-	Dole_0971	-	abortive infection protein
972	 60.32	0	1133683..1134438	-	251	158520989	-	Dole_0972	-	hypothetical protein
973	 62.18	0	1134534..1135958	-	474	158520990	-	Dole_0973	-	polynucleotide adenylyltransferase/metal dependent phosphohydrolase
974	 60.12	0	1135970..1136932	-	320	158520991	-	Dole_0974	-	cation diffusion facilitator family transporter
975	 62.18	0	1136964..1138100	-	378	158520992	-	Dole_0975	-	metallophosphoesterase
976	 61.25	0	1138244..1138612	+	122	158520993	-	Dole_0976	-	membrane protein
977	 50.67	0	1138800..1138949	+	49	158520994	-	Dole_0977	-	hypothetical protein
978	 60.20	0	1138963..1140834	+	623	158520995	-	Dole_0978	-	carbamoyltransferase
979	 60.10	0	1140815..1141438	+	207	158520996	-	Dole_0979	-	nuclear protein SET
980	 60.93	0	1141452..1145375	+	1307	158520997	-	Dole_0980	-	ATP-dependent helicase HrpA
981	 57.83	0	1145416..1150791	-	1791	158520998	-	Dole_0981	-	PAS/PAC sensor hybrid histidine kinase
982	 61.39	0	1151013..1152470	+	485	158520999	-	Dole_0982	-	aldehyde dehydrogenase
983	 56.24	0	1152638..1153366	-	242	158521000	-	Dole_0983	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
984	 59.73	0	1153430..1154524	-	364	158521001	-	Dole_0984	-	glycosyl transferase group 1
985	 59.08	0	1154594..1155463	-	289	158521002	-	Dole_0985	-	glycosyl transferase family protein
986	 56.68	0	1155695..1157497	-	600	158521003	-	Dole_0986	-	radical SAM domain-containing protein
987	 54.23	0	1157751..1158602	-	283	158521004	-	Dole_0987	-	MCP methyltransferase, CheR-type
988	 59.65	0	1158610..1159764	-	384	158521005	-	Dole_0988	-	response regulator receiver modulated CheB methylesterase
989	 57.78	0	1159812..1160261	-	149	158521006	-	Dole_0989	-	CheW protein
990	 59.88	0	1160308..1163565	-	1085	158521007	-	Dole_0990	-	CheA signal transduction histidine kinase
991	 60.44	0	1163735..1165018	-	427	158521008	-	Dole_0991	-	peptidase U32
992	 55.14	0	1165197..1165682	+	161	158521009	-	Dole_0992	-	hypothetical protein
993	 62.10	0	1165741..1166178	+	145	158521010	-	Dole_0993	-	hypothetical protein
994	 60.54	0	1166178..1167695	+	505	158521011	-	Dole_0994	-	glucose-methanol-choline oxidoreductase
995	 57.00	0	1167755..1168768	+	337	158521012	-	Dole_0995	-	hypothetical protein
996	 37.35	-2	1168841..1169089	-	82	158521013	-	Dole_0996	-	hypothetical protein
997	 54.25	0	1169143..1169577	+	144	158521014	-	Dole_0997	-	adenylylsulfate reductase, beta subunit
998	 57.78	0	1169657..1171636	+	659	158521015	-	Dole_0998	-	adenylylsulfate reductase
999	 55.97	0	1171930..1173201	+	423	158521016	-	Dole_0999	-	heterodisulfide reductase, subunit A (HdrA)
1000	 58.88	0	1173212..1175548	+	778	158521017	-	Dole_1000	-	methyl-viologen-reducing hydrogenase delta subunit
1001	 55.81	0	1175585..1176781	+	398	158521018	-	Dole_1001	-	heterodisulfide reductase, putative
1002	 58.75	0	1177046..1178320	-	424	158521019	-	Dole_1002	-	sulfate adenylyltransferase
1003	 62.25	0	1178563..1181028	+	821	158521020	-	Dole_1003	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1004	 57.65	0	1181337..1183532	+	731	158521021	-	Dole_1004	-	hypothetical protein
1005	 56.93	0	1183538..1183876	-	112	158521022	-	Dole_1005	-	hypothetical protein
1006	 57.01	0	1183981..1185243	+	420	158521023	-	Dole_1006	-	Fe-S oxidoreductase-like protein
1007	 61.77	0	1185459..1186193	+	244	158521024	-	Dole_1007	-	hypothetical protein
1008	 53.91	0	1186496..1186840	+	114	158521025	-	Dole_1008	-	helix-hairpin-helix repeat-containing competence protein ComEA
1009	 55.35	0	1186967..1188874	+	635	158521026	-	Dole_1009	-	polysaccharide biosynthesis protein CapD
1010	 57.33	0	1188981..1190030	+	349	158521027	-	Dole_1010	-	dTDP-glucose 4,6-dehydratase
1011	 55.86	0	1190054..1190932	+	292	158521028	-	Dole_1011	-	glucose-1-phosphate thymidylyltransferase
1012	 54.08	0	1190935..1191498	+	187	158521029	-	Dole_1012	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1013	 60.25	0	1191768..1193480	+	570	158521030	-	Dole_1013	-	sulfate adenylyltransferase
1014	 60.19	0	1193509..1194156	-	215	158521031	-	Dole_1014	-	ABC-type transport system auxiliary component-like protein
1015	 58.49	0	1194190..1195155	-	321	158521032	-	Dole_1015	-	hypothetical protein
1016	 55.64	0	1195203..1195964	-	253	158521033	-	Dole_1016	-	ABC transporter-related protein
1017	 58.89	0	1195966..1197123	-	385	158521034	-	Dole_1017	-	hypothetical protein
1018	 55.82	0	1197437..1198681	-	414	158521035	-	Dole_1018	-	hypothetical protein
1019	 58.77	0	1198724..1199926	-	400	158521036	-	Dole_1019	-	sn-glycerol-3-phosphate dehydrogenase subunit C
1020	 60.48	0	1199923..1201263	-	446	158521037	-	Dole_1020	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
1021	 62.63	+1	1201250..1202908	-	552	158521038	-	Dole_1021	-	sn-glycerol-3-phosphate dehydrogenase subunit A
1022	 51.85	0	1203117..1204952	+	611	158521039	-	Dole_1022	-	hypothetical protein
1023	 49.16	-1	1205070..1206674	-	534	158521040	-	Dole_1023	-	hypothetical protein
1024	 58.23	0	1206807..1207730	-	307	158521041	-	Dole_1024	-	beta-lactamase domain-containing protein
1025	 58.56	0	1207787..1209316	-	509	158521042	-	Dole_1025	-	hypothetical protein
1026	 58.20	0	1209529..1211028	-	499	158521043	-	Dole_1026	-	sodium:neurotransmitter symporter
1027	 55.08	0	1211463..1212506	-	347	158521044	-	Dole_1027	-	endonuclease/exonuclease/phosphatase
1028	 60.89	0	1212746..1214875	-	709	158521045	-	Dole_1028	-	DEAD/DEAH box helicase domain-containing protein
1029	 59.55	0	1214876..1215634	-	252	158521046	-	Dole_1029	-	cobyrinic acid ac-diamide synthase
1030	 62.71	+1	1215813..1217783	+	656	158521047	-	Dole_1030	-	peptidase U32
1031	 51.23	0	1218035..1218319	+	94	158521048	-	Dole_1031	-	histone family protein DNA-binding protein
1032	 56.71	0	1218416..1218877	+	153	158521049	-	Dole_1032	-	general secretion pathway protein G
1033	 59.52	0	1218951..1219538	+	195	158521050	-	Dole_1033	-	hypothetical protein
1034	 60.56	0	1219525..1219950	+	141	158521051	-	Dole_1034	-	hypothetical protein
1035	 60.78	0	1219928..1220641	+	237	158521052	-	Dole_1035	-	hypothetical protein
1036	 58.01	0	1220638..1221723	+	361	158521053	-	Dole_1036	-	Type II secretory pathway component PulK-like protein
1037	 61.53	0	1221777..1223237	+	486	158521054	-	Dole_1037	-	fimbrial assembly family protein
1038	 60.72	0	1223234..1223788	+	184	158521055	-	Dole_1038	-	hypothetical protein
1039	 58.98	0	1223785..1224669	+	294	158521056	-	Dole_1039	-	hypothetical protein
1040	 58.05	0	1224707..1225588	+	293	158521057	-	Dole_1040	-	PDZ/DHR/GLGF domain-containing protein
1041	 58.38	0	1225639..1228038	+	799	158521058	-	Dole_1041	-	general secretion pathway protein D
1042	 59.08	0	1228042..1229754	+	570	158521059	-	Dole_1042	-	general secretory pathway protein E
1043	 57.79	0	1229751..1230167	+	138	158521060	-	Dole_1043	-	hypothetical protein
1044	 58.41	0	1230184..1231140	+	318	158521061	-	Dole_1044	-	hypothetical protein
1045	 58.05	0	1231217..1232446	-	409	158521062	-	Dole_1045	-	general secretion pathway protein F
1046	 52.88	0	1232505..1232903	-	132	158521063	-	Dole_1046	-	hypothetical protein
1047	 55.72	0	1232942..1234366	-	474	158521064	-	Dole_1047	-	hypothetical protein
1048	 53.37	0	1234654..1237098	-	814	158521065	-	Dole_1048	-	response regulator receiver protein
1049	 58.28	0	1237324..1238313	+	329	158521066	-	Dole_1049	-	hypothetical protein
1050	 59.21	0	1238335..1238991	+	218	158521067	-	Dole_1050	-	hypothetical protein
1051	 53.06	0	1239000..1239359	-	119	158521068	-	Dole_1051	-	type IV pilus assembly PilZ
1052	 58.86	0	1239802..1241517	+	571	158521069	-	Dole_1052	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1053	 60.82	0	1241570..1242133	+	187	158521070	-	Dole_1053	-	carboxymuconolactone decarboxylase
1054	 61.76	0	1242199..1245456	+	1085	158521071	-	Dole_1054	-	exodeoxyribonuclease V, gamma subunit
1055	 62.57	+1	1245434..1249045	+	1203	158521072	-	Dole_1055	-	exodeoxyribonuclease V, beta subunit
1056	 62.30	0	1249047..1250876	+	609	158521073	-	Dole_1056	-	exodeoxyribonuclease V, alpha subunit
1057	 61.97	0	1250892..1251338	+	148	158521074	-	Dole_1057	-	RpiB/LacA/LacB family sugar-phosphate isomerase
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.