IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.58   STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
945	 71.86	0	1126958..1128958	+	666	83717465	-	BTH_II0950	-	biotin carboxylase
946	 63.52	0	1129087..1130229	+	380	83718270	-	BTH_II0951	-	hypothetical protein
947	 64.66	0	1130395..1131543	-	382	83716839	-	BTH_II0952	-	hypothetical protein
948	 67.06	0	1131564..1132574	-	336	83716104	-	BTH_II0953	-	hypothetical protein
949	 68.38	0	1132798..1133439	-	213	83717818	-	BTH_II0954	-	YadA-like C-terminal region protein
950	 72.85	+1	1133551..1135668	-	705	83717379	-	BTH_II0955	-	TPR domain-containing protein
951	 70.81	0	1135785..1136267	-	160	83717307	-	BTH_II0956	-	hypothetical protein
952	 67.18	0	1136258..1142335	-	2025	83717098	-	BTH_II0957	-	outer membrane protein, putative
953	 65.17	0	1143815..1144885	-	356	83716585	-	BTH_II0958	-	arsenical resistance protein, putative
954	 66.46	0	1144962..1145456	-	164	83716308	-	BTH_II0959	-	arsenate reductase
955	 64.69	0	1145491..1145997	-	168	83717564	-	BTH_II0960	-	glyoxalase family protein family
956	 66.37	0	1145967..1146302	-	111	83716558	-	BTH_II0961	-	arsenical resistance transcriptional regulator
957	 66.55	0	1146648..1147505	-	285	83717820	-	BTH_II0962	-	hypothetical protein
958	 61.90	-1	1147678..1147971	-	97	83717027	-	BTH_II0963	-	hypothetical protein
959	 66.47	0	1148463..1149977	-	504	83716838	-	BTH_II0964	-	hypothetical protein
960	 71.34	0	1150228..1150890	-	220	83716981	-	BTH_II0965	-	NADPH-dependent FMN reductase family protein
961	 67.93	0	1151175..1152920	+	581	83718108	-	BTH_II0966	-	glycine betaine/L-proline ABC transporter, ATP-binding protein
962	 66.56	0	1152913..1153815	+	300	83716128	-	BTH_II0967	-	glycine betaine/L-proline ABC transporter, permease protein, putative
963	 70.47	0	1153931..1154929	+	332	83716141	-	BTH_II0968	-	AraC family transcriptional regulator
964	 64.46	0	1155030..1155980	+	316	83716699	-	BTH_II0969	-	glycine betaine/L-proline ABC transporter, periplasmic glycine betaine/L-proline-binding protein
965	 67.79	0	1156251..1157405	-	384	83717779	-	BTH_II0970	-	hypothetical protein
966	 71.54	0	1157458..1158462	-	334	83718325	-	BTH_II0971	-	asparaginyl beta-hydroxylase
967	 71.30	0	1158497..1159468	-	323	83716470	-	BTH_II0972	-	hypothetical protein
968	 67.78	0	1159465..1160274	-	269	83717188	-	BTH_II0973	-	hydroxypyruvate isomerase
969	 65.53	0	1160351..1161760	-	469	83717773	-	BTH_II0974	-	major facilitator family transporter
970	 71.34	0	1161777..1162418	-	213	83716936	-	BTH_II0975	-	putative aldolase
971	 71.58	0	1162415..1163758	-	447	83718130	-	BTH_II0976	-	YgbK domain-containing protein
972	 73.10	+1	1163781..1164635	-	284	83716275	-	BTH_II0977	-	2-hydroxy-3-oxopropionate reductase
973	 69.79	0	1164742..1165446	-	234	83716749	-	BTH_II0978	-	GntR family transcriptional regulator
974	 70.89	0	1165636..1166250	+	204	83717251	-	BTH_II0979	-	HAD-superfamily hydrolase
975	 67.80	0	1166514..1168460	+	648	83717448	-	BTH_II0980	-	MerR family transcriptional regulator
976	 66.05	0	1168727..1169542	-	271	83717967	-	BTH_II0981	-	hydrolase, putative
977	 68.35	0	1169539..1170546	-	335	83718342	-	BTH_II0982	-	D-3-phosphoglycerate dehydrogenase, putative
978	 67.03	0	1170551..1171642	-	363	83717846	-	BTH_II0983	-	ribose operon repressor, putative
979	 66.93	0	1171650..1173545	-	631	83717806	-	BTH_II0984	-	TRAP transporter DctM family protein
980	 65.50	0	1173561..1174592	-	343	83717939	-	BTH_II0985	-	solute-binding family 7 protein
981	 75.14	+1	1174715..1174891	+	58	83717386	-	BTH_II0986	-	hypothetical protein
982	 64.75	0	1175014..1175742	+	242	83717200	-	BTH_II0987	-	glutathione S-transferase P subunit
983	 58.53	-2	1175915..1176295	-	126	83716077	-	BTH_II0988	-	IS4 family transposase
984	 55.88	-2	1176265..1176672	-	135	83718079	-	BTH_II0989	-	transposase, putative
985	 68.37	0	1176881..1177585	+	234	83718119	-	BTH_II0990	-	hypothetical protein
986	 75.40	+1	1177852..1178664	-	270	83717623	-	BTH_II0991	-	AraC family transcriptional regulator
987	 67.52	0	1178721..1179071	-	116	83716372	-	BTH_II0993	-	hypothetical protein
988	 67.46	0	1178760..1179011	+	83	83717051	-	BTH_II0992	-	hypothetical protein
989	 70.05	0	1179304..1180692	-	462	83717298	-	BTH_II0994	-	AraC family transcriptional regulator
990	 67.01	0	1180738..1182210	+	490	83718269	sdaA-2	BTH_II0995	-	L-serine ammonia-lyase
991	 66.91	0	1182227..1183471	+	414	83716659	-	BTH_II0996	-	sarcosine oxidase, beta subunit, putative
992	 65.31	0	1183600..1183893	+	97	83716133	-	BTH_II0997	-	sarcosine oxidase delta subunit (sarcosine oxidasesubunit D)
993	 68.46	0	1183890..1186898	+	1002	83717636	-	BTH_II0998	-	sarcosine oxidase, alpha subunit
994	 69.97	0	1186888..1187523	+	211	83717171	-	BTH_II0999	-	sarcosine oxidase subunit gamma
995	 71.43	0	1187523..1187984	+	153	83717054	-	BTH_II1000	-	dihydroneopterin aldolase, putative
996	 58.22	-2	1188263..1188475	-	70	83716560	rpsU-2	BTH_II1001	-	30S ribosomal protein S21
997	 56.37	-2	1189126..1189329	+	67	83717433	-	BTH_II1002	-	cold-shock domain-contain protein
998	 69.57	0	1190038..1190484	-	148	83717279	-	BTH_II1003	-	hypothetical protein
999	 65.90	0	1190757..1191017	+	86	83716581	-	BTH_II1004	-	hypothetical protein
1000	 78.71	+2	1191297..1191545	+	82	83717120	-	BTH_II1005	-	glyoxylate reductase
1001	 66.05	0	1191585..1192070	+	161	83717531	-	BTH_II1006	-	OsmC/Ohr family protein
1002	 68.22	0	1192310..1194748	+	812	83717440	-	BTH_II1007	-	sensory box histidine kinase
1003	 61.59	-1	1194774..1195226	+	150	83718090	-	BTH_II1008	-	response regulator
1004	 67.17	0	1195310..1196701	+	463	83716080	-	BTH_II1009	-	sensory box histidine kinase/response regulator
1005	 70.34	0	1196765..1197961	-	398	83716736	-	BTH_II1010	-	major facilitator family transporter
1006	 54.88	-2	1197986..1199113	-	375	83717795	-	BTH_II1011	-	integrase-like protein
1007	 64.22	0	1199349..1201103	-	584	83718214	-	BTH_II1012	-	gp38
1008	 58.42	-2	1201118..1201396	-	92	83716362	-	BTH_II1013	-	gp44
1009	 58.84	-1	1201396..1201791	-	131	83718262	-	BTH_II1014	-	hypothetical protein
1010	 62.50	-1	1201794..1202465	-	223	83717575	-	BTH_II1015	-	gp41
1011	 55.64	-2	1202479..1203249	-	256	83716901	-	BTH_II1016	-	gp42
1012	 59.90	-1	1203448..1204260	-	270	83718225	-	BTH_II1017	-	bacteriophage/transposase fusion protein
1013	 59.33	-1	1204257..1204406	-	49	83716051	-	BTH_II1018	-	phage protein, putative
1014	 62.50	-1	1204714..1204833	-	39	83717178	-	BTH_II1019	-	gp40-related protein
1015	 62.12	-1	1204857..1204988	-	43	83717005	-	BTH_II1020	-	gp56-related protein
1016	 58.70	-2	1204999..1205274	-	91	83716403	-	BTH_II1021	-	gp49
1017	 63.19	0	1205515..1205658	+	47	83716679	-	BTH_II1022	-	gp50
1018	 47.29	-2	1205674..1205931	+	85	83716180	-	BTH_II1023	-	gp51
1019	 63.36	0	1206159..1206551	-	130	83717665	-	BTH_II1024	-	gp52
1020	 59.46	-1	1207002..1207334	+	110	83716210	-	BTH_II1025	-	gp63
1021	 54.24	-2	1207331..1207684	-	117	83716974	-	BTH_II1026	-	gp64
1022	 63.33	0	1207725..1208204	+	159	83717929	-	BTH_II1027	-	gp65
1023	 64.89	0	1208219..1209403	+	394	83716252	-	BTH_II1028	-	Mte8-like protein
1024	 63.76	0	1209408..1210544	+	378	83716880	-	BTH_II1029	-	gp56
1025	 62.86	-1	1210541..1211539	+	332	83717395	-	BTH_II1030	-	gp57
1026	 65.09	0	1211574..1212395	+	273	83716828	-	BTH_II1031	-	gp58
1027	 64.75	0	1212392..1212652	+	86	83717449	-	BTH_II1032	-	gp69
1028	 61.97	-1	1212863..1213798	+	311	83717213	-	BTH_II1033	-	gp60
1029	 61.59	-1	1213795..1214346	+	183	83717876	-	BTH_II1034	-	gp72
1030	 59.94	-1	1214343..1214699	+	118	83717977	-	BTH_II1035	-	gp62
1031	 61.84	-1	1214681..1215136	+	151	83716439	-	BTH_II1036	-	gp74
1032	 60.06	-1	1215139..1215471	+	110	83716485	-	BTH_II1037	-	gp64
1033	 59.39	-1	1215447..1215707	+	86	83716074	-	BTH_II1038	-	gp65
1034	 61.49	-1	1215704..1216147	+	147	83717158	-	BTH_II1039	-	hypothetical protein
1035	 57.04	-2	1216197..1216466	+	89	83717580	-	BTH_II1040	-	hypothetical protein
1036	 62.46	-1	1216450..1216734	+	94	83718204	-	BTH_II1041	-	hypothetical protein
1037	 63.42	0	1216935..1217273	+	112	83717854	-	BTH_II1042	-	59R
1038	 60.70	-1	1217359..1217844	+	161	83716048	-	BTH_II1043	-	hypothetical protein
1039	 59.72	-1	1217844..1219586	+	580	83717767	-	BTH_II1044	-	phage terminase, large subunit, putative
1040	 60.16	-1	1219507..1220889	+	460	83716795	-	BTH_II1045	-	head portal protein
1041	 63.70	0	1220867..1221709	+	280	83718056	-	BTH_II1046	-	ClpP protease
1042	 61.46	-1	1221666..1222991	+	441	83716436	-	BTH_II1047	-	HK97 family phage major capsid protein
1043	 60.61	-1	1223063..1223227	+	54	83716940	-	BTH_II1048	-	hypothetical protein
1044	 58.19	-2	1223231..1223572	+	113	83718052	-	BTH_II1049	-	hypothetical protein
67.58	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.