IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
892	 64.52	0	1052055..1052147	+	30	83717610	-	BTH_II0897	-	hypothetical protein
893	 69.25	0	1052158..1053669	+	503	83717237	-	BTH_II0898	-	piperideine-6-carboxylate dehydrogenase
894	 71.77	0	1053701..1054798	-	365	83718059	-	BTH_II0899	-	ApbE family protein
895	 72.70	+1	1054779..1057049	-	756	83716381	-	BTH_II0900	-	nitrate reductase/sulfite reductase flavoprotein alpha-component, putative
896	 72.36	+1	1057071..1057790	-	239	83717066	-	BTH_II0901	-	hypothetical protein
897	 71.71	0	1057901..1058356	-	151	83717697	-	BTH_II0902	-	hypothetical protein
898	 67.42	0	1058501..1059160	+	219	83718337	-	BTH_II0903	-	DNA-binding response regulator
899	 73.63	+1	1059163..1060527	+	454	83716897	-	BTH_II0904	-	sensor histidine kinase
900	 72.65	+1	1060648..1061649	-	333	83717472	-	BTH_II0905	-	LacI family transcription regulator
901	 73.85	+1	1061555..1064422	+	955	83716398	-	BTH_II0906	-	PTS system, glucose-specific EIIA/HPr/phosphoenolpyruvate-protein phosphotransferase components
902	 75.33	+1	1064419..1065468	+	349	83716437	pfkB	BTH_II0907	-	1-phosphofructokinase
903	 72.09	+1	1065491..1067278	+	595	83717371	-	BTH_II0908	-	protein-N p-phosphohistidine-sugar phosphotransferase
904	 68.82	0	1067508..1068344	+	278	83716855	-	BTH_II0909	-	acetyltransferase
905	 68.78	0	1068844..1070262	+	472	83716697	-	BTH_II0910	-	major facilitator family transporter
906	 70.41	0	1070596..1071663	-	355	83716160	-	BTH_II0911	-	hypothetical protein
907	 73.71	+1	1071727..1072365	-	212	83718282	-	BTH_II0912	-	hypothetical protein
908	 65.32	0	1072704..1073369	-	221	83717774	-	BTH_II0913	-	O-methyltransferase
909	 66.35	0	1073462..1074094	+	210	83718003	-	BTH_II0914	-	transcriptional regulatory protein
910	 70.09	0	1074260..1074376	+	38	83717493	-	BTH_II0915	-	hypothetical protein
911	 70.64	0	1074440..1076074	-	544	83716688	groL-2	BTH_II0916	-	chaperonin GroEL
912	 70.10	0	1076498..1077574	+	358	83717100	-	BTH_II0917	-	hypothetical protein
913	 71.53	0	1077552..1078538	-	328	83717322	-	BTH_II0918	-	ribose-phosphate pyrophosphokinase
914	 70.07	0	1078629..1081037	-	802	83717316	nadE	BTH_II0919	-	NAD synthetase
915	 64.00	0	1081227..1081676	+	149	83717973	-	BTH_II0920	-	CBS domain-containing protein
916	 70.37	0	1081799..1082122	+	107	83716283	-	BTH_II0921	-	hypothetical protein
917	 72.04	+1	1082116..1083231	+	371	83717586	ald	BTH_II0922	-	alanine dehydrogenase
918	 62.36	-1	1083510..1083857	+	115	83718251	-	BTH_II0923	-	hypothetical protein
919	 62.62	-1	1084196..1084738	-	180	83716486	-	BTH_II0924	-	heat shock protein
920	 73.20	+1	1084895..1087267	-	790	83716176	-	BTH_II0925	-	beta-lactamase, putative
921	 70.48	0	1087222..1088481	-	419	83717612	-	BTH_II0926	-	hypothetical protein
922	 69.72	0	1089037..1090803	+	588	83717215	-	BTH_II0927	-	acetyl-CoA synthetase
923	 69.70	0	1090800..1091822	+	340	83717680	-	BTH_II0928	-	pyruvate dehydrogenase, E1 component, alpha subunit
924	 68.21	0	1091819..1092793	+	324	83717153	-	BTH_II0929	-	pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase beta subunit
925	 70.35	0	1092822..1093961	+	379	83716054	-	BTH_II0930	-	branched-chain alpha-keto acid dehydrogenase subunit E2
926	 63.45	0	1093958..1094206	+	82	83717904	-	BTH_II0931	-	hypothetical protein
927	 63.91	0	1094203..1094637	-	144	83717400	-	BTH_II0932	-	LuxR family DNA-binding response regulator
928	 67.48	0	1095456..1097798	+	780	83716852	-	BTH_II0933	-	Rhs element Vgr protein, putative
929	 63.72	0	1097798..1098679	+	293	83718134	-	BTH_II0934	-	hypothetical protein
930	 55.88	-2	1099210..1099617	+	135	83716653	-	BTH_II0935	-	transposase, putative
931	 58.53	-2	1099587..1099967	+	126	83718118	-	BTH_II0936	-	IS4 family transposase
932	 58.51	-2	1100030..1101622	+	530	83716152	-	BTH_II0937	-	hypothetical protein
933	 72.50	+1	1102705..1106733	-	1342	83716754	-	BTH_II0938	-	glycogen operon protein GlgX
934	 69.34	0	1106744..1109248	-	834	83717750	glgB	BTH_II0939	-	glycogen branching enzyme
935	 71.27	0	1109366..1111036	+	556	83716045	-	BTH_II0940	-	glycogen synthase
936	 68.23	0	1111076..1113577	+	833	83716471	-	BTH_II0941	-	glycogen phosphorylase family protein
937	 67.56	0	1113918..1114142	+	74	83717031	-	BTH_II0942	-	hypothetical protein
938	 72.10	+1	1114187..1117294	+	1035	83718092	-	BTH_II0943	-	AMP-binding domain-containing protein
939	 64.89	0	1117662..1119125	-	487	83716393	-	BTH_II0944	-	mulitcopper oxidase domain-containing protein
940	 61.54	-1	1119312..1121633	-	773	83716752	-	BTH_II0945	-	nitric oxide reductase
941	 70.01	0	1122236..1123012	-	258	83718343	-	BTH_II0946	-	TetR family transcriptional regulator
942	 66.16	0	1123217..1124398	+	393	83717970	-	BTH_II0947	-	isovaleryl-CoA dehydrogenase
943	 68.35	0	1124421..1126028	+	535	83716107	-	BTH_II0948	-	carboxyl transferase domain-containing protein
944	 73.16	+1	1126049..1126834	+	261	83716960	-	BTH_II0949	-	enoyl-CoA hydratase
945	 71.86	0	1126958..1128958	+	666	83717465	-	BTH_II0950	-	biotin carboxylase
946	 63.52	0	1129087..1130229	+	380	83718270	-	BTH_II0951	-	hypothetical protein
947	 64.66	0	1130395..1131543	-	382	83716839	-	BTH_II0952	-	hypothetical protein
948	 67.06	0	1131564..1132574	-	336	83716104	-	BTH_II0953	-	hypothetical protein
949	 68.38	0	1132798..1133439	-	213	83717818	-	BTH_II0954	-	YadA-like C-terminal region protein
950	 72.85	+1	1133551..1135668	-	705	83717379	-	BTH_II0955	-	TPR domain-containing protein
951	 70.81	0	1135785..1136267	-	160	83717307	-	BTH_II0956	-	hypothetical protein
952	 67.18	0	1136258..1142335	-	2025	83717098	-	BTH_II0957	-	outer membrane protein, putative
953	 65.17	0	1143815..1144885	-	356	83716585	-	BTH_II0958	-	arsenical resistance protein, putative
954	 66.46	0	1144962..1145456	-	164	83716308	-	BTH_II0959	-	arsenate reductase
955	 64.69	0	1145491..1145997	-	168	83717564	-	BTH_II0960	-	glyoxalase family protein family
956	 66.37	0	1145967..1146302	-	111	83716558	-	BTH_II0961	-	arsenical resistance transcriptional regulator
957	 66.55	0	1146648..1147505	-	285	83717820	-	BTH_II0962	-	hypothetical protein
958	 61.90	-1	1147678..1147971	-	97	83717027	-	BTH_II0963	-	hypothetical protein
959	 66.47	0	1148463..1149977	-	504	83716838	-	BTH_II0964	-	hypothetical protein
960	 71.34	0	1150228..1150890	-	220	83716981	-	BTH_II0965	-	NADPH-dependent FMN reductase family protein
961	 67.93	0	1151175..1152920	+	581	83718108	-	BTH_II0966	-	glycine betaine/L-proline ABC transporter, ATP-binding protein
962	 66.56	0	1152913..1153815	+	300	83716128	-	BTH_II0967	-	glycine betaine/L-proline ABC transporter, permease protein, putative
963	 70.47	0	1153931..1154929	+	332	83716141	-	BTH_II0968	-	AraC family transcriptional regulator
964	 64.46	0	1155030..1155980	+	316	83716699	-	BTH_II0969	-	glycine betaine/L-proline ABC transporter, periplasmic glycine betaine/L-proline-binding protein
965	 67.79	0	1156251..1157405	-	384	83717779	-	BTH_II0970	-	hypothetical protein
966	 71.54	0	1157458..1158462	-	334	83718325	-	BTH_II0971	-	asparaginyl beta-hydroxylase
967	 71.30	0	1158497..1159468	-	323	83716470	-	BTH_II0972	-	hypothetical protein
968	 67.78	0	1159465..1160274	-	269	83717188	-	BTH_II0973	-	hydroxypyruvate isomerase
969	 65.53	0	1160351..1161760	-	469	83717773	-	BTH_II0974	-	major facilitator family transporter
970	 71.34	0	1161777..1162418	-	213	83716936	-	BTH_II0975	-	putative aldolase
971	 71.58	0	1162415..1163758	-	447	83718130	-	BTH_II0976	-	YgbK domain-containing protein
972	 73.10	+1	1163781..1164635	-	284	83716275	-	BTH_II0977	-	2-hydroxy-3-oxopropionate reductase
973	 69.79	0	1164742..1165446	-	234	83716749	-	BTH_II0978	-	GntR family transcriptional regulator
974	 70.89	0	1165636..1166250	+	204	83717251	-	BTH_II0979	-	HAD-superfamily hydrolase
975	 67.80	0	1166514..1168460	+	648	83717448	-	BTH_II0980	-	MerR family transcriptional regulator
976	 66.05	0	1168727..1169542	-	271	83717967	-	BTH_II0981	-	hydrolase, putative
977	 68.35	0	1169539..1170546	-	335	83718342	-	BTH_II0982	-	D-3-phosphoglycerate dehydrogenase, putative
978	 67.03	0	1170551..1171642	-	363	83717846	-	BTH_II0983	-	ribose operon repressor, putative
979	 66.93	0	1171650..1173545	-	631	83717806	-	BTH_II0984	-	TRAP transporter DctM family protein
980	 65.50	0	1173561..1174592	-	343	83717939	-	BTH_II0985	-	solute-binding family 7 protein
981	 75.14	+1	1174715..1174891	+	58	83717386	-	BTH_II0986	-	hypothetical protein
982	 64.75	0	1175014..1175742	+	242	83717200	-	BTH_II0987	-	glutathione S-transferase P subunit
983	 58.53	-2	1175915..1176295	-	126	83716077	-	BTH_II0988	-	IS4 family transposase
984	 55.88	-2	1176265..1176672	-	135	83718079	-	BTH_II0989	-	transposase, putative
985	 68.37	0	1176881..1177585	+	234	83718119	-	BTH_II0990	-	hypothetical protein
986	 75.40	+1	1177852..1178664	-	270	83717623	-	BTH_II0991	-	AraC family transcriptional regulator
987	 67.52	0	1178721..1179071	-	116	83716372	-	BTH_II0993	-	hypothetical protein
988	 67.46	0	1178760..1179011	+	83	83717051	-	BTH_II0992	-	hypothetical protein
989	 70.05	0	1179304..1180692	-	462	83717298	-	BTH_II0994	-	AraC family transcriptional regulator
990	 67.01	0	1180738..1182210	+	490	83718269	sdaA-2	BTH_II0995	-	L-serine ammonia-lyase
991	 66.91	0	1182227..1183471	+	414	83716659	-	BTH_II0996	-	sarcosine oxidase, beta subunit, putative
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.