IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.58   STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
843	 69.59	0	989822..990607	-	261	83718310	-	BTH_II0848	-	type III secretion target BopE
844	 68.10	0	991240..992778	+	512	83717606	-	BTH_II0849	-	BopA protein
845	 66.89	0	992960..993415	+	151	83718111	-	BTH_II0850	-	type III secretion chaperone BicP
846	 68.90	0	993650..994321	+	223	83716526	-	BTH_II0851	-	DNA-binding response regulator
847	 65.54	0	994546..994989	+	147	83717070	-	BTH_II0852	-	hypothetical protein
848	 72.73	+1	995098..996285	+	395	83717752	-	BTH_II0853	-	AraC family transcriptional regulator
849	 73.03	+1	996276..997595	-	439	83717089	-	BTH_II0854	-	ubiquitin-specific proteinase 31, putative
850	 75.58	+1	997685..1001575	-	1296	83716079	-	BTH_II0855	-	putative lipoprotein
851	 71.22	0	1001572..1002252	-	226	83716722	-	BTH_II0856	-	hypothetical protein
852	 71.04	0	1002249..1003643	-	464	83716919	-	BTH_II0857	-	hypothetical protein
853	 73.98	+1	1003676..1004482	-	268	83717233	-	BTH_II0858	-	hypothetical protein
854	 66.11	0	1004492..1004851	-	119	83716426	-	BTH_II0859	-	hypothetical protein
855	 76.73	+2	1004913..1005707	-	264	83716769	-	BTH_II0860	-	putative lipoprotein
856	 71.17	0	1005686..1006750	-	354	83717467	-	BTH_II0861	-	pentapeptide repeat-containing protein
857	 74.68	+1	1006768..1009386	-	872	83717943	-	BTH_II0862	-	pentapeptide repeat-containing protein
858	 68.54	0	1009425..1012463	-	1012	83717090	-	BTH_II0863	-	Rhs element Vgr protein
859	 73.38	+1	1012489..1015365	-	958	83717809	-	BTH_II0864	-	ATP-dependent Clp protease, ATP-binding subunit ClpB
860	 72.35	+1	1015352..1016407	-	351	83717117	-	BTH_II0865	-	hypothetical protein
861	 72.17	+1	1016371..1018113	-	580	83716626	-	BTH_II0866	-	hypothetical protein
862	 71.70	0	1018142..1018618	-	158	83717481	-	BTH_II0867	-	hypothetical protein
863	 61.96	-1	1018597..1019085	-	162	83716550	-	BTH_II0868	-	hcp protein
864	 64.96	0	1019268..1020794	-	508	83716783	-	BTH_II0869	-	hypothetical protein
865	 65.66	0	1020791..1021285	-	164	83717451	-	BTH_II0870	-	hypothetical protein
866	 72.19	+1	1021668..1023368	+	566	83717576	-	BTH_II0871	-	sensor histidine kinase
867	 66.26	0	1023365..1024099	+	244	83718212	-	BTH_II0872	-	DNA-binding response regulator
868	 73.96	+1	1024090..1025886	+	598	83716378	-	BTH_II0873	-	ImpA-like N-terminal family protein
869	 69.75	0	1026177..1026500	-	107	83717096	-	BTH_II0874	-	hypothetical protein
870	 69.29	0	1026584..1028185	-	533	83716561	-	BTH_II0875	-	Hep_Hag family protein
871	 69.42	0	1028324..1029595	-	423	83717327	-	BTH_II0876	-	hypothetical protein
872	 67.88	0	1029806..1030957	-	383	83716723	-	BTH_II0877	-	N-acetylmuramoyl-L-alanine amidase domain-containing protein
873	 67.68	0	1030900..1032477	+	525	83717789	-	BTH_II0878	-	hemagglutinin domain-containing protein
874	 69.52	0	1032594..1033223	-	209	83718169	-	BTH_II0879	-	SCO1/SenC family protein
875	 72.32	+1	1033226..1034056	-	276	83716090	-	BTH_II0880	-	hypothetical protein
876	 68.21	0	1034081..1035631	-	516	83716714	-	BTH_II0881	-	mulitcopper oxidase domain-containing protein
877	 64.17	0	1036040..1036480	-	146	83717701	-	BTH_II0882	-	hypothetical protein
878	 67.85	0	1036526..1037368	-	280	83718352	-	BTH_II0883	-	hypothetical protein
879	 69.29	0	1037371..1038588	-	405	83718368	-	BTH_II0884	-	hypothetical protein
880	 70.97	0	1038589..1039611	+	340	83716742	-	BTH_II0885	-	TetR family transcriptional regulator
881	 69.94	0	1039845..1040699	-	284	83717269	nadE	BTH_II0886	-	NAD synthetase
882	 74.83	+1	1040822..1041727	-	301	83718263	-	BTH_II0887	-	hypothetical protein
883	 66.67	0	1041813..1041998	-	61	83717757	-	BTH_II0888	-	hypothetical protein
884	 73.45	+1	1042103..1043149	+	348	83716949	-	BTH_II0889	-	DeoR family transcriptional regulator
885	 70.88	0	1043703..1045505	+	600	83717000	-	BTH_II0890	-	hypothetical protein
886	 62.58	-1	1045929..1046564	-	211	83716343	-	BTH_II0891	-	TetR family transcriptional regulator
887	 71.21	0	1046680..1048065	-	461	83718361	-	BTH_II0892	-	oxidoreductase, FAD-binding
888	 71.88	0	1048235..1048579	-	114	83717928	-	BTH_II0893	-	addiction module antitoxin
889	 70.63	0	1048640..1049548	-	302	83716907	-	BTH_II0894	-	LysR family transcriptional regulator
890	 68.93	0	1049551..1050744	+	397	83716157	-	BTH_II0895	-	hypothetical protein
891	 74.04	+1	1050800..1052020	+	406	83718242	-	BTH_II0896	-	aminotransferase family protein
892	 64.52	0	1052055..1052147	+	30	83717610	-	BTH_II0897	-	hypothetical protein
893	 69.25	0	1052158..1053669	+	503	83717237	-	BTH_II0898	-	piperideine-6-carboxylate dehydrogenase
894	 71.77	0	1053701..1054798	-	365	83718059	-	BTH_II0899	-	ApbE family protein
895	 72.70	+1	1054779..1057049	-	756	83716381	-	BTH_II0900	-	nitrate reductase/sulfite reductase flavoprotein alpha-component, putative
896	 72.36	+1	1057071..1057790	-	239	83717066	-	BTH_II0901	-	hypothetical protein
897	 71.71	0	1057901..1058356	-	151	83717697	-	BTH_II0902	-	hypothetical protein
898	 67.42	0	1058501..1059160	+	219	83718337	-	BTH_II0903	-	DNA-binding response regulator
899	 73.63	+1	1059163..1060527	+	454	83716897	-	BTH_II0904	-	sensor histidine kinase
900	 72.65	+1	1060648..1061649	-	333	83717472	-	BTH_II0905	-	LacI family transcription regulator
901	 73.85	+1	1061555..1064422	+	955	83716398	-	BTH_II0906	-	PTS system, glucose-specific EIIA/HPr/phosphoenolpyruvate-protein phosphotransferase components
902	 75.33	+1	1064419..1065468	+	349	83716437	pfkB	BTH_II0907	-	1-phosphofructokinase
903	 72.09	+1	1065491..1067278	+	595	83717371	-	BTH_II0908	-	protein-N p-phosphohistidine-sugar phosphotransferase
904	 68.82	0	1067508..1068344	+	278	83716855	-	BTH_II0909	-	acetyltransferase
905	 68.78	0	1068844..1070262	+	472	83716697	-	BTH_II0910	-	major facilitator family transporter
906	 70.41	0	1070596..1071663	-	355	83716160	-	BTH_II0911	-	hypothetical protein
907	 73.71	+1	1071727..1072365	-	212	83718282	-	BTH_II0912	-	hypothetical protein
908	 65.32	0	1072704..1073369	-	221	83717774	-	BTH_II0913	-	O-methyltransferase
909	 66.35	0	1073462..1074094	+	210	83718003	-	BTH_II0914	-	transcriptional regulatory protein
910	 70.09	0	1074260..1074376	+	38	83717493	-	BTH_II0915	-	hypothetical protein
911	 70.64	0	1074440..1076074	-	544	83716688	groL-2	BTH_II0916	-	chaperonin GroEL
912	 70.10	0	1076498..1077574	+	358	83717100	-	BTH_II0917	-	hypothetical protein
913	 71.53	0	1077552..1078538	-	328	83717322	-	BTH_II0918	-	ribose-phosphate pyrophosphokinase
914	 70.07	0	1078629..1081037	-	802	83717316	nadE	BTH_II0919	-	NAD synthetase
915	 64.00	0	1081227..1081676	+	149	83717973	-	BTH_II0920	-	CBS domain-containing protein
916	 70.37	0	1081799..1082122	+	107	83716283	-	BTH_II0921	-	hypothetical protein
917	 72.04	+1	1082116..1083231	+	371	83717586	ald	BTH_II0922	-	alanine dehydrogenase
918	 62.36	-1	1083510..1083857	+	115	83718251	-	BTH_II0923	-	hypothetical protein
919	 62.62	-1	1084196..1084738	-	180	83716486	-	BTH_II0924	-	heat shock protein
920	 73.20	+1	1084895..1087267	-	790	83716176	-	BTH_II0925	-	beta-lactamase, putative
921	 70.48	0	1087222..1088481	-	419	83717612	-	BTH_II0926	-	hypothetical protein
922	 69.72	0	1089037..1090803	+	588	83717215	-	BTH_II0927	-	acetyl-CoA synthetase
923	 69.70	0	1090800..1091822	+	340	83717680	-	BTH_II0928	-	pyruvate dehydrogenase, E1 component, alpha subunit
924	 68.21	0	1091819..1092793	+	324	83717153	-	BTH_II0929	-	pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase beta subunit
925	 70.35	0	1092822..1093961	+	379	83716054	-	BTH_II0930	-	branched-chain alpha-keto acid dehydrogenase subunit E2
926	 63.45	0	1093958..1094206	+	82	83717904	-	BTH_II0931	-	hypothetical protein
927	 63.91	0	1094203..1094637	-	144	83717400	-	BTH_II0932	-	LuxR family DNA-binding response regulator
928	 67.48	0	1095456..1097798	+	780	83716852	-	BTH_II0933	-	Rhs element Vgr protein, putative
929	 63.72	0	1097798..1098679	+	293	83718134	-	BTH_II0934	-	hypothetical protein
930	 55.88	-2	1099210..1099617	+	135	83716653	-	BTH_II0935	-	transposase, putative
931	 58.53	-2	1099587..1099967	+	126	83718118	-	BTH_II0936	-	IS4 family transposase
932	 58.51	-2	1100030..1101622	+	530	83716152	-	BTH_II0937	-	hypothetical protein
933	 72.50	+1	1102705..1106733	-	1342	83716754	-	BTH_II0938	-	glycogen operon protein GlgX
934	 69.34	0	1106744..1109248	-	834	83717750	glgB	BTH_II0939	-	glycogen branching enzyme
935	 71.27	0	1109366..1111036	+	556	83716045	-	BTH_II0940	-	glycogen synthase
936	 68.23	0	1111076..1113577	+	833	83716471	-	BTH_II0941	-	glycogen phosphorylase family protein
937	 67.56	0	1113918..1114142	+	74	83717031	-	BTH_II0942	-	hypothetical protein
938	 72.10	+1	1114187..1117294	+	1035	83718092	-	BTH_II0943	-	AMP-binding domain-containing protein
939	 64.89	0	1117662..1119125	-	487	83716393	-	BTH_II0944	-	mulitcopper oxidase domain-containing protein
940	 61.54	-1	1119312..1121633	-	773	83716752	-	BTH_II0945	-	nitric oxide reductase
941	 70.01	0	1122236..1123012	-	258	83718343	-	BTH_II0946	-	TetR family transcriptional regulator
942	 66.16	0	1123217..1124398	+	393	83717970	-	BTH_II0947	-	isovaleryl-CoA dehydrogenase
67.58	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.