IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.58   STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
813	 64.61	0	960508..960993	-	161	83716611	-	BTH_II0818	-	hypothetical protein
814	 64.31	0	960960..961892	-	310	83717154	-	BTH_II0819	-	transcriptional regulator, putative
815	 70.09	0	962607..962723	-	38	83718024	-	BTH_II0820	-	hypothetical protein
816	 73.28	+1	962902..963687	-	261	83717498	-	BTH_II0821	-	hypothetical protein
817	 71.77	0	963656..964243	-	195	83716971	-	BTH_II0822	-	oxygen-regulated invasion protein OrgA
818	 70.68	0	964240..965187	-	315	83716456	-	BTH_II0823	-	type III secretion system BasJ
819	 63.04	-1	965192..965494	-	100	83717438	-	BTH_II0824	-	type III secretion system protein BsaK
820	 58.15	-2	965524..965793	-	89	83716658	yscF	BTH_II0825	-	type III secretion system needle protein
821	 67.09	0	965790..967199	-	469	83717333	-	BTH_II0826	-	type III secretion system protein BsaM
822	 64.95	0	967469..968227	+	252	83716503	-	BTH_II0827	-	type III secretion system transcriptional regulator BsaN
823	 69.78	0	968241..970100	+	619	83717183	-	BTH_II0828	-	type III secretion system protein BsaO
824	 73.92	+1	970016..971242	+	408	83716244	-	BTH_II0829	-	type III secretion system protein BsaP
825	 66.33	0	971242..973350	+	702	83717923	-	BTH_II0830	-	type III secretion system protein BsaQ
826	 67.16	0	973362..973769	+	135	83718086	-	BTH_II0831	-	type III secretion system protein BsaR
827	 71.70	0	973766..975076	+	436	83717980	-	BTH_II0832	-	ATP synthase SpaL
828	 75.05	+1	975073..975537	+	154	83717463	spaM	BTH_II0833	-	surface presentation of antigens protein
829	 76.73	+2	975515..976726	+	403	83717637	-	BTH_II0834	-	BsaU protein
830	 73.73	+1	976723..977685	+	320	83717115	-	BTH_II0835	-	type III secretion system protein BsaV
831	 62.48	-1	977675..978367	+	230	83718329	spaP	BTH_II0836	-	surface presentation of antigens protein SpaP
832	 65.10	0	978402..978656	+	84	83716660	-	BTH_II0837	-	type III secretion system protein BsaX
833	 68.12	0	978680..979435	+	251	83716221	-	BTH_II0838	-	type III secretion system protein BsaY
834	 67.02	0	979439..980584	+	381	83716929	-	BTH_II0839	-	surface presentation of antigens protein SpaS
835	 63.76	0	980710..981225	+	171	83716418	-	BTH_II0840	-	type III secretion chaperone BicA
836	 69.07	0	981244..983118	+	624	83717078	-	BTH_II0841	-	BipB protein
837	 71.46	0	983160..984389	+	409	83718166	-	BTH_II0842	-	type III secretion target BipC
838	 65.98	0	984515..984805	+	96	83717611	-	BTH_II0843	-	DNA-binding protein BprA
839	 65.15	0	984941..985798	+	285	83716730	-	BTH_II0844	-	BprD protein
840	 74.91	+1	985857..988502	+	881	83717805	-	BTH_II0845	-	hypothetical protein
841	 70.21	0	988499..988780	+	93	83717282	-	BTH_II0846	-	BapB protein
842	 71.58	0	988777..989325	+	182	83716468	-	BTH_II0847	-	BapC protein
843	 69.59	0	989822..990607	-	261	83718310	-	BTH_II0848	-	type III secretion target BopE
844	 68.10	0	991240..992778	+	512	83717606	-	BTH_II0849	-	BopA protein
845	 66.89	0	992960..993415	+	151	83718111	-	BTH_II0850	-	type III secretion chaperone BicP
846	 68.90	0	993650..994321	+	223	83716526	-	BTH_II0851	-	DNA-binding response regulator
847	 65.54	0	994546..994989	+	147	83717070	-	BTH_II0852	-	hypothetical protein
848	 72.73	+1	995098..996285	+	395	83717752	-	BTH_II0853	-	AraC family transcriptional regulator
849	 73.03	+1	996276..997595	-	439	83717089	-	BTH_II0854	-	ubiquitin-specific proteinase 31, putative
850	 75.58	+1	997685..1001575	-	1296	83716079	-	BTH_II0855	-	putative lipoprotein
851	 71.22	0	1001572..1002252	-	226	83716722	-	BTH_II0856	-	hypothetical protein
852	 71.04	0	1002249..1003643	-	464	83716919	-	BTH_II0857	-	hypothetical protein
853	 73.98	+1	1003676..1004482	-	268	83717233	-	BTH_II0858	-	hypothetical protein
854	 66.11	0	1004492..1004851	-	119	83716426	-	BTH_II0859	-	hypothetical protein
855	 76.73	+2	1004913..1005707	-	264	83716769	-	BTH_II0860	-	putative lipoprotein
856	 71.17	0	1005686..1006750	-	354	83717467	-	BTH_II0861	-	pentapeptide repeat-containing protein
857	 74.68	+1	1006768..1009386	-	872	83717943	-	BTH_II0862	-	pentapeptide repeat-containing protein
858	 68.54	0	1009425..1012463	-	1012	83717090	-	BTH_II0863	-	Rhs element Vgr protein
859	 73.38	+1	1012489..1015365	-	958	83717809	-	BTH_II0864	-	ATP-dependent Clp protease, ATP-binding subunit ClpB
860	 72.35	+1	1015352..1016407	-	351	83717117	-	BTH_II0865	-	hypothetical protein
861	 72.17	+1	1016371..1018113	-	580	83716626	-	BTH_II0866	-	hypothetical protein
862	 71.70	0	1018142..1018618	-	158	83717481	-	BTH_II0867	-	hypothetical protein
863	 61.96	-1	1018597..1019085	-	162	83716550	-	BTH_II0868	-	hcp protein
864	 64.96	0	1019268..1020794	-	508	83716783	-	BTH_II0869	-	hypothetical protein
865	 65.66	0	1020791..1021285	-	164	83717451	-	BTH_II0870	-	hypothetical protein
866	 72.19	+1	1021668..1023368	+	566	83717576	-	BTH_II0871	-	sensor histidine kinase
867	 66.26	0	1023365..1024099	+	244	83718212	-	BTH_II0872	-	DNA-binding response regulator
868	 73.96	+1	1024090..1025886	+	598	83716378	-	BTH_II0873	-	ImpA-like N-terminal family protein
869	 69.75	0	1026177..1026500	-	107	83717096	-	BTH_II0874	-	hypothetical protein
870	 69.29	0	1026584..1028185	-	533	83716561	-	BTH_II0875	-	Hep_Hag family protein
871	 69.42	0	1028324..1029595	-	423	83717327	-	BTH_II0876	-	hypothetical protein
872	 67.88	0	1029806..1030957	-	383	83716723	-	BTH_II0877	-	N-acetylmuramoyl-L-alanine amidase domain-containing protein
873	 67.68	0	1030900..1032477	+	525	83717789	-	BTH_II0878	-	hemagglutinin domain-containing protein
874	 69.52	0	1032594..1033223	-	209	83718169	-	BTH_II0879	-	SCO1/SenC family protein
875	 72.32	+1	1033226..1034056	-	276	83716090	-	BTH_II0880	-	hypothetical protein
876	 68.21	0	1034081..1035631	-	516	83716714	-	BTH_II0881	-	mulitcopper oxidase domain-containing protein
877	 64.17	0	1036040..1036480	-	146	83717701	-	BTH_II0882	-	hypothetical protein
878	 67.85	0	1036526..1037368	-	280	83718352	-	BTH_II0883	-	hypothetical protein
879	 69.29	0	1037371..1038588	-	405	83718368	-	BTH_II0884	-	hypothetical protein
880	 70.97	0	1038589..1039611	+	340	83716742	-	BTH_II0885	-	TetR family transcriptional regulator
881	 69.94	0	1039845..1040699	-	284	83717269	nadE	BTH_II0886	-	NAD synthetase
882	 74.83	+1	1040822..1041727	-	301	83718263	-	BTH_II0887	-	hypothetical protein
883	 66.67	0	1041813..1041998	-	61	83717757	-	BTH_II0888	-	hypothetical protein
884	 73.45	+1	1042103..1043149	+	348	83716949	-	BTH_II0889	-	DeoR family transcriptional regulator
885	 70.88	0	1043703..1045505	+	600	83717000	-	BTH_II0890	-	hypothetical protein
886	 62.58	-1	1045929..1046564	-	211	83716343	-	BTH_II0891	-	TetR family transcriptional regulator
887	 71.21	0	1046680..1048065	-	461	83718361	-	BTH_II0892	-	oxidoreductase, FAD-binding
888	 71.88	0	1048235..1048579	-	114	83717928	-	BTH_II0893	-	addiction module antitoxin
889	 70.63	0	1048640..1049548	-	302	83716907	-	BTH_II0894	-	LysR family transcriptional regulator
890	 68.93	0	1049551..1050744	+	397	83716157	-	BTH_II0895	-	hypothetical protein
891	 74.04	+1	1050800..1052020	+	406	83718242	-	BTH_II0896	-	aminotransferase family protein
892	 64.52	0	1052055..1052147	+	30	83717610	-	BTH_II0897	-	hypothetical protein
893	 69.25	0	1052158..1053669	+	503	83717237	-	BTH_II0898	-	piperideine-6-carboxylate dehydrogenase
894	 71.77	0	1053701..1054798	-	365	83718059	-	BTH_II0899	-	ApbE family protein
895	 72.70	+1	1054779..1057049	-	756	83716381	-	BTH_II0900	-	nitrate reductase/sulfite reductase flavoprotein alpha-component, putative
896	 72.36	+1	1057071..1057790	-	239	83717066	-	BTH_II0901	-	hypothetical protein
897	 71.71	0	1057901..1058356	-	151	83717697	-	BTH_II0902	-	hypothetical protein
898	 67.42	0	1058501..1059160	+	219	83718337	-	BTH_II0903	-	DNA-binding response regulator
899	 73.63	+1	1059163..1060527	+	454	83716897	-	BTH_II0904	-	sensor histidine kinase
900	 72.65	+1	1060648..1061649	-	333	83717472	-	BTH_II0905	-	LacI family transcription regulator
901	 73.85	+1	1061555..1064422	+	955	83716398	-	BTH_II0906	-	PTS system, glucose-specific EIIA/HPr/phosphoenolpyruvate-protein phosphotransferase components
902	 75.33	+1	1064419..1065468	+	349	83716437	pfkB	BTH_II0907	-	1-phosphofructokinase
903	 72.09	+1	1065491..1067278	+	595	83717371	-	BTH_II0908	-	protein-N p-phosphohistidine-sugar phosphotransferase
904	 68.82	0	1067508..1068344	+	278	83716855	-	BTH_II0909	-	acetyltransferase
905	 68.78	0	1068844..1070262	+	472	83716697	-	BTH_II0910	-	major facilitator family transporter
906	 70.41	0	1070596..1071663	-	355	83716160	-	BTH_II0911	-	hypothetical protein
907	 73.71	+1	1071727..1072365	-	212	83718282	-	BTH_II0912	-	hypothetical protein
908	 65.32	0	1072704..1073369	-	221	83717774	-	BTH_II0913	-	O-methyltransferase
909	 66.35	0	1073462..1074094	+	210	83718003	-	BTH_II0914	-	transcriptional regulatory protein
910	 70.09	0	1074260..1074376	+	38	83717493	-	BTH_II0915	-	hypothetical protein
911	 70.64	0	1074440..1076074	-	544	83716688	groL-2	BTH_II0916	-	chaperonin GroEL
912	 70.10	0	1076498..1077574	+	358	83717100	-	BTH_II0917	-	hypothetical protein
67.58	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.