IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.58   STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
763	 66.67	0	895729..896760	-	343	83716520	-	BTH_II0768	-	twitching motility protein PilT, putative
764	 68.98	0	896846..899482	+	878	83716256	-	BTH_II0769	-	type IV pilus biogenesis protein PilN, putative
765	 72.56	+1	899494..900783	+	429	83716420	-	BTH_II0770	-	pilO family protein
766	 74.14	+1	900773..901294	+	173	83717669	-	BTH_II0771	-	hypothetical protein
767	 70.81	0	901291..902907	+	538	83718165	-	BTH_II0772	-	type II/IV secretion system protein
768	 69.17	0	902897..903973	+	358	83717653	-	BTH_II0773	-	type IV pilus biogenesis protein
769	 62.50	-1	904021..904572	+	183	83718181	-	BTH_II0774	-	type IV pilus biogenesis protein, putative
770	 71.67	0	904612..905091	+	159	83717716	-	BTH_II0775	-	hypothetical protein
771	 67.68	0	905091..906773	+	560	83716262	-	BTH_II0776	-	type IV prepilin
772	 68.92	0	906894..908711	+	605	83717709	-	BTH_II0777	-	type II/III secretion system protein
773	 66.98	0	908785..909432	-	215	83718362	-	BTH_II0778	-	hypothetical protein
774	 75.12	+1	909676..909876	+	66	83716921	-	BTH_II0779	-	hypothetical protein
775	 67.97	0	909798..910028	-	76	83717863	-	BTH_II0780	-	hypothetical protein
776	 68.16	0	910307..911107	-	266	83716968	-	BTH_II0781	-	hypothetical protein
777	 61.99	-1	911187..911528	+	113	83717335	-	BTH_II0782	-	hypothetical protein
778	 67.31	0	911859..913421	-	520	83717857	-	BTH_II0783	-	hypothetical protein
779	 70.23	0	913547..914500	-	317	83718365	-	BTH_II0784	-	agmatinase, putative
780	 69.73	0	914654..915568	+	304	83716507	-	BTH_II0785	-	LysR family transcriptional regulator
781	 68.61	0	915736..916302	+	188	83717485	-	BTH_II0786	-	hypothetical protein
782	 69.45	0	916388..918973	+	861	83717793	-	BTH_II0787	-	ATP-dependent protease
783	 68.16	0	918966..919502	+	178	83717265	-	BTH_II0788	-	hypothetical protein
784	 70.94	0	919600..920067	-	155	83716721	-	BTH_II0789	-	HipB domain-containing protein
785	 71.39	0	920428..920808	-	126	83716131	-	BTH_II0790	-	hypothetical protein
786	 72.01	0	921076..923397	+	773	161723113	-	BTH_II0791	-	cellulose synthase regulator protein
787	 74.90	+1	923402..924883	+	493	83717569	-	BTH_II0792	-	endo-1,4-D-glucanase
788	 75.41	+1	924850..929265	+	1471	83717474	-	BTH_II0793	-	cellulose synthase operon protein C
789	 75.02	+1	929396..931525	+	709	83716931	-	BTH_II0794	-	hypothetical protein
790	 71.83	0	931522..931734	+	70	83716096	-	BTH_II0795	-	hypothetical protein
791	 75.06	+1	931731..932516	+	261	83716489	-	BTH_II0796	-	cellulose biosynthesis protein, putative
792	 71.39	0	932513..935050	+	845	83718202	-	BTH_II0797	-	glycosyl transferase, group 2 family protein
793	 68.65	0	935084..936649	+	521	83716905	-	BTH_II0798	-	hypothetical protein
794	 67.03	0	936952..937785	-	277	161723124	tauD	BTH_II0799	-	taurine dioxygenase
795	 70.62	0	938089..939099	+	336	83716789	tauA	BTH_II0800	-	taurine ABC transporter, periplasmic binding protein
796	 69.48	0	939120..939902	+	260	83716100	-	BTH_II0801	-	taurine ABC transporter, ATP-binding protein
797	 71.95	0	939905..940756	+	283	83716597	-	BTH_II0802	-	taurine ABC transporter, permease protein
798	 68.33	0	940832..942157	-	441	83718117	-	BTH_II0803	-	oxidoreductase, FAD/FMN-binding
799	 70.76	0	942512..943318	-	268	83717744	-	BTH_II0804	-	N-acyl homoserine lactone synthase
800	 63.49	0	943432..944124	-	230	83716740	-	BTH_II0805	-	LuxR family transcriptional regulator
801	 68.22	0	944779..945549	-	256	83716806	-	BTH_II0806	-	hypothetical protein
802	 69.00	0	945695..947281	-	528	83716288	-	BTH_II0807	-	phosphate transporter family protein
803	 75.23	+1	947410..947958	-	182	83717346	-	BTH_II0808	-	hypothetical protein
804	 63.43	0	947963..948487	-	174	83718390	-	BTH_II0809	-	AsnC family transcriptional regulator
805	 68.46	0	948463..949188	+	241	83717667	-	BTH_II0810	-	LysE family protein
806	 72.55	+1	949294..951162	+	622	83716631	-	BTH_II0811	-	serine protease, kumamolysin
807	 66.01	0	951669..953333	+	554	83716854	-	BTH_II0812	-	serine-type carboxypeptidase family protein
808	 70.59	0	953453..954676	-	407	83717219	-	BTH_II0813	-	FMN-dependent family dehydrogenase
809	 69.93	0	954779..955666	+	295	83716983	-	BTH_II0814	-	LysR family transcriptional regulator
810	 66.06	0	955989..957308	-	439	83717389	-	BTH_II0815	-	metabolite:proton symporter family protein
811	 68.32	0	957819..959516	-	565	83718299	-	BTH_II0816	-	thermolysin metallopeptidase
812	 68.48	0	959709..959873	+	54	83716474	-	BTH_II0817	-	hypothetical protein
813	 64.61	0	960508..960993	-	161	83716611	-	BTH_II0818	-	hypothetical protein
814	 64.31	0	960960..961892	-	310	83717154	-	BTH_II0819	-	transcriptional regulator, putative
815	 70.09	0	962607..962723	-	38	83718024	-	BTH_II0820	-	hypothetical protein
816	 73.28	+1	962902..963687	-	261	83717498	-	BTH_II0821	-	hypothetical protein
817	 71.77	0	963656..964243	-	195	83716971	-	BTH_II0822	-	oxygen-regulated invasion protein OrgA
818	 70.68	0	964240..965187	-	315	83716456	-	BTH_II0823	-	type III secretion system BasJ
819	 63.04	-1	965192..965494	-	100	83717438	-	BTH_II0824	-	type III secretion system protein BsaK
820	 58.15	-2	965524..965793	-	89	83716658	yscF	BTH_II0825	-	type III secretion system needle protein
821	 67.09	0	965790..967199	-	469	83717333	-	BTH_II0826	-	type III secretion system protein BsaM
822	 64.95	0	967469..968227	+	252	83716503	-	BTH_II0827	-	type III secretion system transcriptional regulator BsaN
823	 69.78	0	968241..970100	+	619	83717183	-	BTH_II0828	-	type III secretion system protein BsaO
824	 73.92	+1	970016..971242	+	408	83716244	-	BTH_II0829	-	type III secretion system protein BsaP
825	 66.33	0	971242..973350	+	702	83717923	-	BTH_II0830	-	type III secretion system protein BsaQ
826	 67.16	0	973362..973769	+	135	83718086	-	BTH_II0831	-	type III secretion system protein BsaR
827	 71.70	0	973766..975076	+	436	83717980	-	BTH_II0832	-	ATP synthase SpaL
828	 75.05	+1	975073..975537	+	154	83717463	spaM	BTH_II0833	-	surface presentation of antigens protein
829	 76.73	+2	975515..976726	+	403	83717637	-	BTH_II0834	-	BsaU protein
830	 73.73	+1	976723..977685	+	320	83717115	-	BTH_II0835	-	type III secretion system protein BsaV
831	 62.48	-1	977675..978367	+	230	83718329	spaP	BTH_II0836	-	surface presentation of antigens protein SpaP
832	 65.10	0	978402..978656	+	84	83716660	-	BTH_II0837	-	type III secretion system protein BsaX
833	 68.12	0	978680..979435	+	251	83716221	-	BTH_II0838	-	type III secretion system protein BsaY
834	 67.02	0	979439..980584	+	381	83716929	-	BTH_II0839	-	surface presentation of antigens protein SpaS
835	 63.76	0	980710..981225	+	171	83716418	-	BTH_II0840	-	type III secretion chaperone BicA
836	 69.07	0	981244..983118	+	624	83717078	-	BTH_II0841	-	BipB protein
837	 71.46	0	983160..984389	+	409	83718166	-	BTH_II0842	-	type III secretion target BipC
838	 65.98	0	984515..984805	+	96	83717611	-	BTH_II0843	-	DNA-binding protein BprA
839	 65.15	0	984941..985798	+	285	83716730	-	BTH_II0844	-	BprD protein
840	 74.91	+1	985857..988502	+	881	83717805	-	BTH_II0845	-	hypothetical protein
841	 70.21	0	988499..988780	+	93	83717282	-	BTH_II0846	-	BapB protein
842	 71.58	0	988777..989325	+	182	83716468	-	BTH_II0847	-	BapC protein
843	 69.59	0	989822..990607	-	261	83718310	-	BTH_II0848	-	type III secretion target BopE
844	 68.10	0	991240..992778	+	512	83717606	-	BTH_II0849	-	BopA protein
845	 66.89	0	992960..993415	+	151	83718111	-	BTH_II0850	-	type III secretion chaperone BicP
846	 68.90	0	993650..994321	+	223	83716526	-	BTH_II0851	-	DNA-binding response regulator
847	 65.54	0	994546..994989	+	147	83717070	-	BTH_II0852	-	hypothetical protein
848	 72.73	+1	995098..996285	+	395	83717752	-	BTH_II0853	-	AraC family transcriptional regulator
849	 73.03	+1	996276..997595	-	439	83717089	-	BTH_II0854	-	ubiquitin-specific proteinase 31, putative
850	 75.58	+1	997685..1001575	-	1296	83716079	-	BTH_II0855	-	putative lipoprotein
851	 71.22	0	1001572..1002252	-	226	83716722	-	BTH_II0856	-	hypothetical protein
852	 71.04	0	1002249..1003643	-	464	83716919	-	BTH_II0857	-	hypothetical protein
853	 73.98	+1	1003676..1004482	-	268	83717233	-	BTH_II0858	-	hypothetical protein
854	 66.11	0	1004492..1004851	-	119	83716426	-	BTH_II0859	-	hypothetical protein
855	 76.73	+2	1004913..1005707	-	264	83716769	-	BTH_II0860	-	putative lipoprotein
856	 71.17	0	1005686..1006750	-	354	83717467	-	BTH_II0861	-	pentapeptide repeat-containing protein
857	 74.68	+1	1006768..1009386	-	872	83717943	-	BTH_II0862	-	pentapeptide repeat-containing protein
858	 68.54	0	1009425..1012463	-	1012	83717090	-	BTH_II0863	-	Rhs element Vgr protein
859	 73.38	+1	1012489..1015365	-	958	83717809	-	BTH_II0864	-	ATP-dependent Clp protease, ATP-binding subunit ClpB
860	 72.35	+1	1015352..1016407	-	351	83717117	-	BTH_II0865	-	hypothetical protein
861	 72.17	+1	1016371..1018113	-	580	83716626	-	BTH_II0866	-	hypothetical protein
862	 71.70	0	1018142..1018618	-	158	83717481	-	BTH_II0867	-	hypothetical protein
67.58	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.