IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.58   STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
30	 65.33	0	27367..29310	+	647	83716330	-	BTH_II0030	-	radical SAM domain/B12 binding domain-containing protein
31	 67.17	0	29327..30313	+	328	83716836	-	BTH_II0031	-	hypothetical protein
32	 72.99	+1	30548..30721	-	57	83717645	-	BTH_II0032	-	hypothetical protein
33	 68.60	0	30758..31378	-	206	83716961	-	BTH_II0033	-	LysE family protein
34	 68.46	0	31486..32379	+	297	83717763	-	BTH_II0034	-	chromosome replication initiation inhibitor protein
35	 66.67	0	32430..33185	-	251	83718260	-	BTH_II0035	-	Crp/FNR family transcriptional regulator
36	 66.45	0	33335..33802	-	155	83716863	-	BTH_II0036	-	universal stress protein
37	 68.93	0	33968..34453	+	161	83718345	-	BTH_II0037	-	hypothetical protein
38	 70.40	0	34530..36110	+	526	83717221	-	BTH_II0038	-	aldehyde dehydrogenase
39	 69.94	0	36511..37029	-	172	83717944	-	BTH_II0039	-	hypothetical protein
40	 61.18	-1	37196..37432	+	78	83716545	-	BTH_II0040	-	hypothetical protein
41	 66.20	0	37402..38469	+	355	83717197	-	BTH_II0041	-	serine O-acetyltransferase
42	 66.16	0	38576..39367	-	263	83717598	-	BTH_II0042	-	short chain dehydrogenase/reductase family oxidoreductase
43	 65.12	0	39380..40156	-	258	83716218	folE	BTH_II0043	-	GTP cyclohydrolase I
44	 68.18	0	40253..41176	-	307	83716497	-	BTH_II0044	-	LysR family transcriptional regulator
45	 67.73	0	41385..42608	+	407	83718203	-	BTH_II0045	-	4-hydroxybenzoate 3-monooxygenase
46	 65.83	0	42817..43530	+	237	83717527	-	BTH_II0046	-	3-oxoadipate CoA-transferase, alpha subunit
47	 65.30	0	43549..44205	+	218	83716778	-	BTH_II0047	-	3-oxoadipate CoA-succinyl transferase beta subunit
48	 70.89	0	44305..45702	+	465	83718206	-	BTH_II0048	-	3-carboxy-cis,cis-muconate cycloisomerase
49	 67.56	0	45715..46500	+	261	83717956	-	BTH_II0049	-	3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
50	 64.60	0	46516..46902	+	128	83717458	pcaC	BTH_II0050	-	4-carboxymuconolactone decarboxylase
51	 68.43	0	47070..48428	+	452	83716573	-	BTH_II0051	-	4-hydroxybenzoate transporter
52	 63.45	0	48490..48738	-	82	83717951	-	BTH_II0052	-	hypothetical protein
53	 59.91	-1	48839..49681	-	280	83717614	-	BTH_II0053	-	LysE family protein
54	 63.40	0	50436..50864	-	142	83716298	-	BTH_II0054	-	thioredoxin, putative
55	 61.79	-1	50926..52197	-	423	83716337	-	BTH_II0055	-	sulfide:quinone oxidoreductase
56	 66.23	0	52289..53671	-	460	83718196	-	BTH_II0056	-	porin (omp) ABC transporter protein
57	 61.43	-1	53700..53909	-	69	83717693	-	BTH_II0057	-	hypothetical protein
58	 66.35	0	53920..57123	-	1067	83717160	-	BTH_II0058	-	AcrB/AcrD/AcrF family transporter
59	 68.37	0	57145..58380	-	411	83716325	-	BTH_II0059	-	RND family efflux transporter MFP subunit
60	 65.06	0	58594..59277	-	227	83717890	-	BTH_II0060	-	transcription regulator ArsR
61	 63.38	0	59237..60088	-	283	83716687	-	BTH_II0061	-	hypothetical protein
62	 63.40	0	60069..60773	+	234	83718229	-	BTH_II0062	-	ABC transporter, ATP-binding protein
63	 65.27	0	60767..63136	+	789	83716847	-	BTH_II0063	-	permease domain-containing protein
64	 65.84	0	63133..64701	+	522	83717102	-	BTH_II0064	-	RND family efflux transporter MFP subunit
65	 61.11	-1	65260..65745	-	161	83717621	-	BTH_II0065	-	creA protein, putative
66	 64.83	0	65881..66696	+	271	83718385	-	BTH_II0066	-	hypothetical protein
67	 66.86	0	66721..67770	+	349	83716551	-	BTH_II0067	-	CybP
68	 65.88	0	67795..69069	+	424	83717402	-	BTH_II0068	-	DNA-binding response regulator
69	 64.26	0	69165..70121	+	318	83716050	-	BTH_II0069	-	cation efflux family protein
70	 66.43	0	70850..71278	+	142	83716693	-	BTH_II0070	-	PalA
71	 66.73	0	71434..73059	+	541	83717342	-	BTH_II0071	-	hemagglutinin-related protein
72	 64.75	0	73128..74012	+	294	83718366	-	BTH_II0072	-	HlyB family hemolysin activator protein
73	 66.75	0	74419..75609	-	396	83718333	chrA	BTH_II0073	-	chromate resistance transport protein
74	 69.83	0	75606..76427	-	273	83716357	-	BTH_II0074	-	chromate resistance protein ChrB
75	 69.12	0	77021..83086	+	2021	83717990	-	BTH_II0075	-	excinuclease ABC, subunit A, form 2
76	 66.92	0	83335..83736	-	133	83717794	-	BTH_II0076	-	hypothetical protein
77	 67.34	0	84140..86077	+	645	83716947	-	BTH_II0077	-	hypothetical protein
78	 67.64	0	86573..88822	+	749	83717554	-	BTH_II0078	-	phospholipase C
79	 59.30	-1	88930..89187	+	85	83717169	-	BTH_II0079	-	IS407A, transposase OrfA
80	 67.39	0	89295..89432	-	45	83716515	-	BTH_II0080	-	transposase subunit
81	 62.50	-1	89575..89862	-	95	83716123	-	BTH_II0081	-	transposase subunit
82	 51.03	-2	90537..91553	-	338	83716909	-	BTH_II0082	-	hypothetical protein
83	 53.64	-2	91572..92024	-	150	83718089	-	BTH_II0083	-	acetyltransferase
84	 57.34	-2	92677..93405	+	242	83717284	-	BTH_II0084	-	putrescine ABC transporter, permease protein
85	 55.79	-2	93392..94246	+	284	83716817	potC	BTH_II0085	-	ABC transporter, permease protein
86	 53.78	-2	94243..95274	+	343	83716306	-	BTH_II0086	-	putrescine ABC transporter, periplasmic putrescine-binding protein, putative
87	 61.81	-1	95823..96893	-	356	83717871	-	BTH_II0087	-	transposase
88	 57.19	-2	97053..97358	+	101	83716402	-	BTH_II0088	-	DNA-binding protein BprA
89	 67.46	0	97680..100460	+	926	83716745	-	BTH_II0089	-	Rhs element Vgr protein, putative
90	 62.60	-1	100528..102714	+	728	83716109	-	BTH_II0090	-	hypothetical protein
91	 60.04	-1	102853..104391	+	512	83718104	-	BTH_II0091	-	hypothetical protein
92	 67.80	0	104401..104664	+	87	83717026	-	BTH_II0092	-	PAAR motif-containing protein
93	 56.51	-2	104684..104998	-	104	83717557	-	BTH_II0093	-	integrase, putative
94	 58.82	-1	104962..105687	+	241	83718341	-	BTH_II0094	-	hypothetical protein
95	 62.84	-1	105871..106236	+	121	83717732	-	BTH_II0095	-	transposase
96	 62.50	-1	106194..107081	+	295	83716991	-	BTH_II0096	-	transposase
97	 60.03	-1	107167..108702	+	511	83717375	-	BTH_II0097	-	hypothetical protein
98	 67.80	0	108712..108975	+	87	83717867	-	BTH_II0098	-	PAAR motif-containing protein
99	 65.24	0	109390..109809	-	139	83716293	-	BTH_II0099	-	hypothetical protein
100	 66.97	0	109829..110155	-	108	83716191	trx	BTH_II0100	-	thioredoxin
101	 67.68	0	110628..111320	+	230	83716565	-	BTH_II0101	-	putative lipoprotein
102	 69.19	0	112130..112486	-	118	83717520	-	BTH_II0102	-	hypothetical protein
103	 65.37	0	112964..114199	-	411	83717969	-	BTH_II0103	-	outer membrane porin OpcP
104	 65.40	0	114738..115682	-	314	83716532	-	BTH_II0104	-	LysR family transcriptional regulator
105	 67.90	0	116223..116546	-	107	83718096	-	BTH_II0105	-	hypothetical protein
106	 67.39	0	117174..117449	-	91	83717555	-	BTH_II0106	-	hypothetical protein
107	 64.66	0	117552..118499	-	315	161723120	-	BTH_II0107	-	DNA-binding transcriptional regulator CynR
108	 72.59	+1	118751..120184	-	477	83716676	-	BTH_II0108	-	outer membrane efflux protein
109	 69.67	0	120178..121077	-	299	83718248	-	BTH_II0109	-	FusE-MFP/HlyD family membrane protein
110	 68.67	0	121300..123549	-	749	83717755	-	BTH_II0110	-	fusaric acid resistance protein, putative
111	 62.90	-1	124376..125890	-	504	83717439	-	BTH_II0111	-	hypothetical protein
112	 68.72	0	127466..129949	+	827	83717045	-	BTH_II0112	-	Hep_Hag family protein
113	 62.50	-1	130025..131512	-	495	83716039	-	BTH_II0113	-	PqaA
114	 63.78	0	131727..132176	-	149	83717069	-	BTH_II0114	-	YfaZ precursor superfamily protein
115	 57.12	-2	132907..133461	+	184	83717319	-	BTH_II0115	-	frimbrial protein
116	 60.61	-1	133543..134268	+	241	83717851	-	BTH_II0116	-	fimbrial chaperone protein ecpD
117	 64.22	0	134305..137124	+	939	83716782	-	BTH_II0117	-	outer membrane usher protein
118	 63.00	-1	137144..137689	+	181	83716399	-	BTH_II0118	-	major fimbrial subunit protein
119	 60.43	-1	137720..138409	+	229	83717840	-	BTH_II0119	-	hypothetical protein
120	 63.21	0	138412..140088	+	558	83717470	-	BTH_II0120	-	hypothetical protein
121	 58.33	-2	140432..140971	+	179	83716514	-	BTH_II0121	-	hypothetical protein
122	 60.60	-1	141005..142504	+	499	83716153	-	BTH_II0122	-	hypothetical protein
123	 60.46	-1	142705..143187	+	160	83717589	-	BTH_II0123	-	hypothetical protein
124	 61.69	-1	143315..143857	+	180	83717629	-	BTH_II0124	-	putative lipoprotein
125	 61.47	-1	143770..145212	+	480	83717986	-	BTH_II0125	-	hypothetical protein
126	 65.51	0	145209..146510	+	433	83716132	-	BTH_II0126	-	hypothetical protein
127	 66.26	0	146525..150433	+	1302	83716562	-	BTH_II0127	-	putative lipoprotein
128	 66.67	0	150603..151172	+	189	83717749	-	BTH_II0128	-	hypothetical protein
129	 64.83	0	151273..153891	+	872	83718246	-	BTH_II0129	-	Rhs element Vgr protein
67.58	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.