IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.58   STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
723	 72.47	+1	857460..858062	-	200	83716878	-	BTH_II0728	-	hypothetical protein
724	 71.12	0	858049..858564	-	171	83717220	-	BTH_II0729	-	hypothetical protein
725	 66.01	0	858567..860987	-	806	83717900	-	BTH_II0730	-	lectin repeat-containing protein
726	 67.92	0	861415..862845	+	476	83718153	-	BTH_II0731	-	response regulator
727	 68.65	0	862936..864096	+	386	83716238	-	BTH_II0732	-	hypothetical protein
728	 65.74	0	864182..865258	+	358	83717824	-	BTH_II0733	-	sensory box sensor histidine kinase
729	 66.92	0	865411..865809	-	132	83718388	-	BTH_II0734	-	hypothetical protein
730	 71.19	0	865806..867221	-	471	83716233	-	BTH_II0735	-	EmrB/QacA family drug resistance transporter
731	 69.60	0	867312..868232	+	306	83717658	-	BTH_II0736	-	LysR family transcriptional regulator
732	 66.67	0	868443..868574	+	43	83716285	-	BTH_II0737	-	syringomycin biosynthesis enzyme, putative
733	 58.53	-2	868587..868967	-	126	83716618	-	BTH_II0738	-	IS4 family transposase
734	 55.88	-2	868937..869344	-	135	83716543	-	BTH_II0739	-	transposase, putative
735	 70.83	0	869475..870338	-	287	83717312	-	BTH_II0740	-	hypothetical protein
736	 72.60	+1	870381..872369	-	662	83717837	-	BTH_II0741	-	hypothetical protein
737	 65.76	0	872725..873717	-	330	83717347	-	BTH_II0742	-	type III secretion inner membrane protein SctT, putative
738	 76.49	+2	873714..874232	-	172	83716635	-	BTH_II0743	-	putative type III secretory pathway protein
739	 70.65	0	874229..875557	-	442	83717873	-	BTH_II0744	-	type III secretion system ATPase
740	 74.48	+1	875554..876270	-	238	83716301	-	BTH_II0745	-	type III secretion system protein HrpB
741	 77.20	+2	876255..876947	-	230	83716816	-	BTH_II0746	-	hypothetical protein
742	 72.14	+1	876944..877801	-	285	83716240	-	BTH_II0747	-	lipoprotein transmembrane protein
743	 69.78	0	877804..878220	-	138	83717925	-	BTH_II0748	-	HrpB2-like protein
744	 70.81	0	878234..878788	-	184	83716126	-	BTH_II0749	-	hypothetical protein
745	 68.79	0	879024..880106	+	360	83717264	-	BTH_II0750	-	type III secretion system protein HrcU
746	 69.27	0	880103..882175	+	690	83717211	-	BTH_II0751	-	type III secretion inner membrane protein SctV
747	 75.37	+1	882172..882780	+	202	83717503	-	BTH_II0752	-	type III secretion inner membrane protein SctQ
748	 75.00	+1	882815..884086	+	423	83716524	-	BTH_II0753	-	surface presentation of antigens domain-containing protein
749	 65.13	0	884073..884723	+	216	83718233	-	BTH_II0754	-	type III secretion system protein
750	 66.29	0	884771..885034	+	87	83716881	-	BTH_II0755	-	type III secretion inner membrane protein SctS
751	 76.88	+2	885181..885924	+	247	83717953	-	BTH_II0756	-	hypothetical protein
752	 65.03	0	885925..886107	+	60	83717725	-	BTH_II0757	-	hypothetical protein
753	 75.40	+1	886118..887125	+	335	83717370	-	BTH_II0758	-	serine protease
754	 71.83	0	887154..887405	+	83	83716593	-	BTH_II0759	-	hypothetical protein
755	 62.03	-1	887429..887773	+	114	83718271	-	BTH_II0760	-	hypothetical protein
756	 62.72	-1	887864..888319	+	151	83717955	-	BTH_II0761	-	hypothetical protein
757	 72.79	+1	888623..890059	+	478	83716867	-	BTH_II0762	-	regulatory protein HrpB
758	 71.85	0	890417..891091	-	224	83718277	-	BTH_II0763	-	hrp protein, putative
759	 63.93	0	891187..891735	+	182	83717792	-	BTH_II0764	-	hypothetical protein
760	 73.04	+1	891924..892958	+	344	83717116	-	BTH_II0765	-	sensor histidine kinase
761	 68.80	0	893001..893750	+	249	83717570	-	BTH_II0766	-	DNA-binding response regulator
762	 77.78	+2	893747..895546	+	599	83717241	-	BTH_II0767	-	type II/III secretion system family protein
763	 66.67	0	895729..896760	-	343	83716520	-	BTH_II0768	-	twitching motility protein PilT, putative
764	 68.98	0	896846..899482	+	878	83716256	-	BTH_II0769	-	type IV pilus biogenesis protein PilN, putative
765	 72.56	+1	899494..900783	+	429	83716420	-	BTH_II0770	-	pilO family protein
766	 74.14	+1	900773..901294	+	173	83717669	-	BTH_II0771	-	hypothetical protein
767	 70.81	0	901291..902907	+	538	83718165	-	BTH_II0772	-	type II/IV secretion system protein
768	 69.17	0	902897..903973	+	358	83717653	-	BTH_II0773	-	type IV pilus biogenesis protein
769	 62.50	-1	904021..904572	+	183	83718181	-	BTH_II0774	-	type IV pilus biogenesis protein, putative
770	 71.67	0	904612..905091	+	159	83717716	-	BTH_II0775	-	hypothetical protein
771	 67.68	0	905091..906773	+	560	83716262	-	BTH_II0776	-	type IV prepilin
772	 68.92	0	906894..908711	+	605	83717709	-	BTH_II0777	-	type II/III secretion system protein
773	 66.98	0	908785..909432	-	215	83718362	-	BTH_II0778	-	hypothetical protein
774	 75.12	+1	909676..909876	+	66	83716921	-	BTH_II0779	-	hypothetical protein
775	 67.97	0	909798..910028	-	76	83717863	-	BTH_II0780	-	hypothetical protein
776	 68.16	0	910307..911107	-	266	83716968	-	BTH_II0781	-	hypothetical protein
777	 61.99	-1	911187..911528	+	113	83717335	-	BTH_II0782	-	hypothetical protein
778	 67.31	0	911859..913421	-	520	83717857	-	BTH_II0783	-	hypothetical protein
779	 70.23	0	913547..914500	-	317	83718365	-	BTH_II0784	-	agmatinase, putative
780	 69.73	0	914654..915568	+	304	83716507	-	BTH_II0785	-	LysR family transcriptional regulator
781	 68.61	0	915736..916302	+	188	83717485	-	BTH_II0786	-	hypothetical protein
782	 69.45	0	916388..918973	+	861	83717793	-	BTH_II0787	-	ATP-dependent protease
783	 68.16	0	918966..919502	+	178	83717265	-	BTH_II0788	-	hypothetical protein
784	 70.94	0	919600..920067	-	155	83716721	-	BTH_II0789	-	HipB domain-containing protein
785	 71.39	0	920428..920808	-	126	83716131	-	BTH_II0790	-	hypothetical protein
786	 72.01	0	921076..923397	+	773	161723113	-	BTH_II0791	-	cellulose synthase regulator protein
787	 74.90	+1	923402..924883	+	493	83717569	-	BTH_II0792	-	endo-1,4-D-glucanase
788	 75.41	+1	924850..929265	+	1471	83717474	-	BTH_II0793	-	cellulose synthase operon protein C
789	 75.02	+1	929396..931525	+	709	83716931	-	BTH_II0794	-	hypothetical protein
790	 71.83	0	931522..931734	+	70	83716096	-	BTH_II0795	-	hypothetical protein
791	 75.06	+1	931731..932516	+	261	83716489	-	BTH_II0796	-	cellulose biosynthesis protein, putative
792	 71.39	0	932513..935050	+	845	83718202	-	BTH_II0797	-	glycosyl transferase, group 2 family protein
793	 68.65	0	935084..936649	+	521	83716905	-	BTH_II0798	-	hypothetical protein
794	 67.03	0	936952..937785	-	277	161723124	tauD	BTH_II0799	-	taurine dioxygenase
795	 70.62	0	938089..939099	+	336	83716789	tauA	BTH_II0800	-	taurine ABC transporter, periplasmic binding protein
796	 69.48	0	939120..939902	+	260	83716100	-	BTH_II0801	-	taurine ABC transporter, ATP-binding protein
797	 71.95	0	939905..940756	+	283	83716597	-	BTH_II0802	-	taurine ABC transporter, permease protein
798	 68.33	0	940832..942157	-	441	83718117	-	BTH_II0803	-	oxidoreductase, FAD/FMN-binding
799	 70.76	0	942512..943318	-	268	83717744	-	BTH_II0804	-	N-acyl homoserine lactone synthase
800	 63.49	0	943432..944124	-	230	83716740	-	BTH_II0805	-	LuxR family transcriptional regulator
801	 68.22	0	944779..945549	-	256	83716806	-	BTH_II0806	-	hypothetical protein
802	 69.00	0	945695..947281	-	528	83716288	-	BTH_II0807	-	phosphate transporter family protein
803	 75.23	+1	947410..947958	-	182	83717346	-	BTH_II0808	-	hypothetical protein
804	 63.43	0	947963..948487	-	174	83718390	-	BTH_II0809	-	AsnC family transcriptional regulator
805	 68.46	0	948463..949188	+	241	83717667	-	BTH_II0810	-	LysE family protein
806	 72.55	+1	949294..951162	+	622	83716631	-	BTH_II0811	-	serine protease, kumamolysin
807	 66.01	0	951669..953333	+	554	83716854	-	BTH_II0812	-	serine-type carboxypeptidase family protein
808	 70.59	0	953453..954676	-	407	83717219	-	BTH_II0813	-	FMN-dependent family dehydrogenase
809	 69.93	0	954779..955666	+	295	83716983	-	BTH_II0814	-	LysR family transcriptional regulator
810	 66.06	0	955989..957308	-	439	83717389	-	BTH_II0815	-	metabolite:proton symporter family protein
811	 68.32	0	957819..959516	-	565	83718299	-	BTH_II0816	-	thermolysin metallopeptidase
812	 68.48	0	959709..959873	+	54	83716474	-	BTH_II0817	-	hypothetical protein
813	 64.61	0	960508..960993	-	161	83716611	-	BTH_II0818	-	hypothetical protein
814	 64.31	0	960960..961892	-	310	83717154	-	BTH_II0819	-	transcriptional regulator, putative
815	 70.09	0	962607..962723	-	38	83718024	-	BTH_II0820	-	hypothetical protein
816	 73.28	+1	962902..963687	-	261	83717498	-	BTH_II0821	-	hypothetical protein
817	 71.77	0	963656..964243	-	195	83716971	-	BTH_II0822	-	oxygen-regulated invasion protein OrgA
818	 70.68	0	964240..965187	-	315	83716456	-	BTH_II0823	-	type III secretion system BasJ
819	 63.04	-1	965192..965494	-	100	83717438	-	BTH_II0824	-	type III secretion system protein BsaK
820	 58.15	-2	965524..965793	-	89	83716658	yscF	BTH_II0825	-	type III secretion system needle protein
821	 67.09	0	965790..967199	-	469	83717333	-	BTH_II0826	-	type III secretion system protein BsaM
822	 64.95	0	967469..968227	+	252	83716503	-	BTH_II0827	-	type III secretion system transcriptional regulator BsaN
67.58	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.