IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
656	 64.63	0	771768..772898	+	376	83716990	-	BTH_II0659	-	GntR family transcriptional regulator
657	 58.03	-2	773097..773513	+	138	83716452	-	BTH_II0660	-	succinate dehydrogenase, cytochrome b556 subunit
658	 62.60	-1	773518..773886	+	122	83716544	-	BTH_II0661	-	succinate dehydrogenase, hydrophobic membrane anchor protein
659	 66.39	0	773890..775665	+	591	83718253	sdhA	BTH_II0662	-	succinate dehydrogenase flavoprotein subunit
660	 63.68	0	775687..776388	+	233	83718183	sdhB	BTH_II0663	-	succinate dehydrogenase iron-sulfur subunit
661	 64.10	0	776390..776662	+	90	83717674	-	BTH_II0664	-	TPR repeat-containing protein
662	 62.90	-1	776715..778016	+	433	83716217	gltA	BTH_II0665	-	type II citrate synthase
663	 73.58	+1	778127..779095	-	322	83718069	-	BTH_II0666	-	AraC family transcriptional regulator
664	 66.41	0	779171..779560	+	129	83716675	-	BTH_II0667	-	glyoxalase family protein family
665	 68.99	0	780146..780274	+	42	83716608	-	BTH_II0668	-	hypothetical protein
666	 70.76	0	780375..781619	+	414	83717523	-	BTH_II0669	-	dioxygenase, putative
667	 70.77	0	782223..784973	-	916	83718151	-	BTH_II0670	-	2-oxoacid dehydrogenase subunit E1
668	 62.75	-1	784972..785661	+	229	83716630	-	BTH_II0671	-	bkd operon transcriptional regulator
669	 67.59	0	785855..787264	+	469	83717109	leuC	BTH_II0672	-	isopropylmalate isomerase large subunit
670	 62.98	-1	787488..788138	+	216	83717288	leuD	BTH_II0673	-	isopropylmalate isomerase small subunit
671	 66.39	0	788252..789319	+	355	83718087	leuB	BTH_II0674	-	3-isopropylmalate dehydrogenase
672	 65.33	0	789691..790812	+	373	83716286	asd	BTH_II0675	-	aspartate-semialdehyde dehydrogenase
673	 74.48	+1	790948..793482	+	844	83716450	-	BTH_II0676	-	transmembrane protein
674	 68.27	0	793482..794294	+	270	83718190	truA	BTH_II0677	-	tRNA pseudouridine synthase A
675	 70.31	0	794294..795034	+	246	161723119	-	BTH_II0678	-	N-(5'-phosphoribosyl)anthranilate isomerase
676	 66.75	0	795104..796297	+	397	83717275	trpB	BTH_II0679	-	tryptophan synthase subunit beta
677	 65.38	0	796386..797165	+	259	83716900	-	BTH_II0680	-	N-6 adenine-specific DNA methylase
678	 70.22	0	797208..798023	+	271	83717517	trpA	BTH_II0681	-	tryptophan synthase subunit alpha
679	 66.21	0	798103..798975	+	290	83716718	accD	BTH_II0682	-	acetyl-CoA carboxylase subunit beta
680	 67.81	0	799088..800401	+	437	83716186	-	BTH_II0683	-	folylpolyglutamate synthase/dihydrofolate synthase
681	 73.28	+1	800431..801246	+	271	83717746	-	BTH_II0684	-	sporulation repeat-containing protein
682	 67.88	0	801253..801747	+	164	83716941	cvpA	BTH_II0685	-	CvpA family protein
683	 66.08	0	801800..803335	+	511	83716414	purF	BTH_II0686	-	amidophosphoribosyltransferase
684	 66.34	0	803558..804775	+	405	83718046	metZ	BTH_II0687	-	O-succinylhomoserine sulfhydrylase
685	 65.09	0	804868..805248	+	126	83716142	-	BTH_II0688	-	hypothetical protein
686	 71.72	0	805233..806201	-	322	83717405	-	BTH_II0689	-	GDP-6-deoxy-D-lyxo-4-hexulose reductase, putative
687	 64.37	0	806188..807231	-	347	83716887	gmd-2	BTH_II0690	-	GDP-mannose 4,6-dehydratase
688	 69.82	0	807267..808406	-	379	83718391	-	BTH_II0691	-	acyltransferase family protein
689	 67.53	0	808499..808729	+	76	83718060	-	BTH_II0692	-	hypothetical protein
690	 70.01	0	808877..811060	+	727	83717381	-	BTH_II0693	-	hypothetical protein
691	 67.35	0	811112..812578	+	488	83717047	-	BTH_II0694	-	polysaccharide biosynthesis family protein
692	 70.44	0	812467..815040	+	857	83716384	-	BTH_II0695	-	glycosyl transferase, group 1 family protein
693	 72.22	+1	815109..815216	+	35	83716556	-	BTH_II0696	-	hypothetical protein
694	 66.91	0	815753..816985	-	410	83718201	-	BTH_II0697	-	O-antigen acetylase, putative
695	 56.25	-2	817143..817286	+	47	83716220	-	BTH_II0698	-	hypothetical protein
696	 64.41	0	817564..818448	+	294	83717901	galU-3	BTH_II0699	-	UTP-glucose-1-phosphate uridylyltransferase
697	 66.51	0	818848..820161	-	437	83718215	-	BTH_II0700	-	acyltransferase family protein
698	 64.64	0	820250..820693	+	147	83717539	-	BTH_II0701	-	DNA-binding protein BpH2
699	 60.62	-1	821822..823393	-	523	83716254	-	BTH_II0702	-	outer membrane porin OpcP
700	 68.81	0	823442..824419	-	325	83718267	-	BTH_II0703	-	YihY family protein
701	 63.25	0	824608..824841	-	77	83716644	-	BTH_II0704	-	hypothetical protein
702	 69.92	0	825393..826160	+	255	83718016	-	BTH_II0705	-	hypothetical protein
703	 71.61	0	826157..826924	+	255	83717478	-	BTH_II0706	-	hypothetical protein
704	 65.56	0	827701..830772	+	1023	83716383	-	BTH_II0707	-	formate dehydrogenase, alpha subunit, selenocysteine-containing
705	 66.56	0	830783..831697	+	304	83716728	fdxH	BTH_II0708	-	formate dehydrogenase, beta subunit
706	 64.59	0	831694..832320	+	208	83716667	-	BTH_II0709	-	formate dehydrogenase, gamma subunit
707	 70.30	0	832507..833469	+	320	83717858	fdhE	BTH_II0710	-	formate dehydrogenase accessory protein FdhE
708	 72.51	+1	833421..834908	+	495	83717313	selA	BTH_II0711	-	selenocysteine synthase
709	 70.77	0	834905..836830	+	641	83717712	selB	BTH_II0712	-	selenocysteine-specific translation elongation factor
710	 56.12	-2	838211..839395	-	394	83717063	-	BTH_II0715	-	hypothetical protein
711	 58.60	-2	839851..840036	+	61	83716227	-	BTH_II0716	-	transposase
712	 65.25	0	840112..840819	+	235	83718105	-	BTH_II0717	-	transposase
713	 57.52	-2	841121..841459	-	112	83717445	-	BTH_II0718	-	hypothetical protein
714	 55.77	-2	842385..842852	-	155	83717507	-	BTH_II0719	-	streptavidin, putative
715	 59.10	-1	843661..844413	-	250	83716684	-	BTH_II0720	-	hypothetical protein
716	 66.11	0	845217..846821	-	534	83716519	-	BTH_II0721	-	glutamyl-tRNA, putative
717	 61.38	-1	847168..847659	-	163	83717935	-	BTH_II0722	-	hypothetical protein
718	 65.89	0	848397..850592	-	731	83717177	bglB	BTH_II0723	-	beta-glucosidase
719	 71.93	0	851070..851981	-	303	83716528	-	BTH_II0724	-	IclR family transcriptional regulator
720	 69.90	0	852095..854446	+	783	83718232	-	BTH_II0725	-	cytochrome P450
721	 69.88	0	854508..855875	+	455	83717560	-	BTH_II0726	-	4-hydroxybenzoate transporter
722	 66.27	0	856385..857386	+	333	83716246	-	BTH_II0727	-	patatin-like phospholipase
723	 72.47	+1	857460..858062	-	200	83716878	-	BTH_II0728	-	hypothetical protein
724	 71.12	0	858049..858564	-	171	83717220	-	BTH_II0729	-	hypothetical protein
725	 66.01	0	858567..860987	-	806	83717900	-	BTH_II0730	-	lectin repeat-containing protein
726	 67.92	0	861415..862845	+	476	83718153	-	BTH_II0731	-	response regulator
727	 68.65	0	862936..864096	+	386	83716238	-	BTH_II0732	-	hypothetical protein
728	 65.74	0	864182..865258	+	358	83717824	-	BTH_II0733	-	sensory box sensor histidine kinase
729	 66.92	0	865411..865809	-	132	83718388	-	BTH_II0734	-	hypothetical protein
730	 71.19	0	865806..867221	-	471	83716233	-	BTH_II0735	-	EmrB/QacA family drug resistance transporter
731	 69.60	0	867312..868232	+	306	83717658	-	BTH_II0736	-	LysR family transcriptional regulator
732	 66.67	0	868443..868574	+	43	83716285	-	BTH_II0737	-	syringomycin biosynthesis enzyme, putative
733	 58.53	-2	868587..868967	-	126	83716618	-	BTH_II0738	-	IS4 family transposase
734	 55.88	-2	868937..869344	-	135	83716543	-	BTH_II0739	-	transposase, putative
735	 70.83	0	869475..870338	-	287	83717312	-	BTH_II0740	-	hypothetical protein
736	 72.60	+1	870381..872369	-	662	83717837	-	BTH_II0741	-	hypothetical protein
737	 65.76	0	872725..873717	-	330	83717347	-	BTH_II0742	-	type III secretion inner membrane protein SctT, putative
738	 76.49	+2	873714..874232	-	172	83716635	-	BTH_II0743	-	putative type III secretory pathway protein
739	 70.65	0	874229..875557	-	442	83717873	-	BTH_II0744	-	type III secretion system ATPase
740	 74.48	+1	875554..876270	-	238	83716301	-	BTH_II0745	-	type III secretion system protein HrpB
741	 77.20	+2	876255..876947	-	230	83716816	-	BTH_II0746	-	hypothetical protein
742	 72.14	+1	876944..877801	-	285	83716240	-	BTH_II0747	-	lipoprotein transmembrane protein
743	 69.78	0	877804..878220	-	138	83717925	-	BTH_II0748	-	HrpB2-like protein
744	 70.81	0	878234..878788	-	184	83716126	-	BTH_II0749	-	hypothetical protein
745	 68.79	0	879024..880106	+	360	83717264	-	BTH_II0750	-	type III secretion system protein HrcU
746	 69.27	0	880103..882175	+	690	83717211	-	BTH_II0751	-	type III secretion inner membrane protein SctV
747	 75.37	+1	882172..882780	+	202	83717503	-	BTH_II0752	-	type III secretion inner membrane protein SctQ
748	 75.00	+1	882815..884086	+	423	83716524	-	BTH_II0753	-	surface presentation of antigens domain-containing protein
749	 65.13	0	884073..884723	+	216	83718233	-	BTH_II0754	-	type III secretion system protein
750	 66.29	0	884771..885034	+	87	83716881	-	BTH_II0755	-	type III secretion inner membrane protein SctS
751	 76.88	+2	885181..885924	+	247	83717953	-	BTH_II0756	-	hypothetical protein
752	 65.03	0	885925..886107	+	60	83717725	-	BTH_II0757	-	hypothetical protein
753	 75.40	+1	886118..887125	+	335	83717370	-	BTH_II0758	-	serine protease
754	 71.83	0	887154..887405	+	83	83716593	-	BTH_II0759	-	hypothetical protein
755	 62.03	-1	887429..887773	+	114	83718271	-	BTH_II0760	-	hypothetical protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.