IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
593	 69.77	0	696818..697912	+	364	83716634	-	BTH_II0595	-	polyhydroxybutyrate depolymerase domain-containing protein
594	 59.12	-1	698009..698167	+	52	83717010	-	BTH_II0596	-	hypothetical protein
595	 65.95	0	698281..698700	-	139	83717550	-	BTH_II0597	-	organic hydroperoxide resistance protein
596	 64.93	0	698839..699642	-	267	83718044	-	BTH_II0598	-	MarR family transcriptional regulator
597	 66.17	0	699777..700589	-	270	83717861	-	BTH_II0599	-	hypothetical protein
598	 68.37	0	700580..701575	-	331	83716177	thrB	BTH_II0600	-	homoserine kinase
599	 67.67	0	701670..702068	-	132	83716496	-	BTH_II0601	-	hypothetical protein
600	 65.82	0	702224..703750	+	508	83717216	amn	BTH_II0602	-	AMP nucleosidase
601	 66.27	0	703877..704383	-	168	83716705	-	BTH_II0603	-	hypothetical protein
602	 62.53	-1	704549..705298	-	249	83718275	-	BTH_II0604	-	decarboxylase family protein
603	 66.38	0	705300..708080	+	926	83716432	-	BTH_II0605	-	DNA polymerase I
604	 69.78	0	708397..709779	+	460	83717883	-	BTH_II0606	-	NADH dehydrogenase
605	 63.71	0	709776..710012	-	78	83716323	-	BTH_II0607	-	hypothetical protein
606	 68.73	0	710092..711888	-	598	83716874	-	BTH_II0608	-	hypothetical protein
607	 66.78	0	712653..713525	+	290	83717529	-	BTH_II0609	-	carboxymethylenebutenolidase
608	 68.62	0	713567..714436	-	289	83718316	-	BTH_II0610	-	rhodanese domain-containing protein
609	 62.24	-1	714584..715690	-	368	83717172	-	BTH_II0611	-	Rieske family iron-sulfur cluster-binding protein
610	 65.40	0	715939..716253	+	104	83717831	-	BTH_II0612	-	exodeoxyribonuclease VII small subunit
611	 71.19	0	716250..717134	+	294	83716251	-	BTH_II0613	-	geranyltranstransferase
612	 67.14	0	717219..719123	+	634	83717976	dxs	BTH_II0614	-	1-deoxy-D-xylulose-5-phosphate synthase
613	 65.47	0	719239..720072	+	277	83717706	-	BTH_II0615	-	putative GTP cyclohydrolase
614	 71.09	0	720487..721527	-	346	83717849	-	BTH_II0616	-	O-sialoglycoprotein endopeptidase
615	 70.18	0	721658..722881	+	407	83718330	-	BTH_II0617	-	hypothetical protein
616	 59.62	-1	722961..723173	+	70	83716896	rpsU	BTH_II0618	-	30S ribosomal protein S21
617	 67.79	0	723340..723786	+	148	83716247	-	BTH_II0619	-	GatB/Yqey family protein
618	 66.56	0	723883..725760	+	625	83717428	dnaG	BTH_II0620	-	DNA primase
619	 63.67	0	725844..728246	+	800	83716798	-	BTH_II0621	-	RNA polymerase sigma factor RpoD
620	 55.46	-2	728472..729542	-	356	83716149	-	BTH_II0623	-	Bbp50
621	 63.50	0	729772..731604	+	610	83717847	-	BTH_II0624	-	transposase
622	 61.40	-1	730781..731653	+	290	83717189	-	BTH_II0625	-	transposase mutator family protein
623	 52.22	-2	731844..733061	-	405	83716529	-	BTH_II0626	-	acyltransferase
624	 50.51	-2	733078..734055	-	325	83716057	-	BTH_II0627	-	hypothetical protein
625	 67.16	0	734575..735999	+	474	83717130	-	BTH_II0628	-	cytosine/purines/uracil/thiamine/allantoin permease family protein
626	 71.47	0	735996..736931	+	311	83716580	-	BTH_II0629	-	NAD-dependent deacetylase
627	 71.24	0	736894..737571	+	225	83718125	-	BTH_II0630	-	hypothetical protein
628	 66.03	0	738026..739441	+	471	83717630	gnd	BTH_II0631	-	6-phosphogluconate dehydrogenase
629	 67.87	0	739640..739972	+	110	83717812	-	BTH_II0632	-	hypothetical protein
630	 66.67	0	740366..740728	+	120	83716117	-	BTH_II0633	-	hypothetical protein
631	 71.16	0	740913..741758	+	281	83716815	-	BTH_II0634	-	lipoprotein NlpD, putative
632	 64.47	0	741874..742509	-	211	83717326	-	BTH_II0635	-	hypothetical protein
633	 63.33	0	742611..743300	+	229	83718187	-	BTH_II0636	-	cytochrome b561, putative
634	 73.74	+1	743461..743856	+	131	83717006	-	BTH_II0637	-	hypothetical protein
635	 68.21	0	743943..746204	+	753	83717103	-	BTH_II0638	-	TonB-dependent copper receptor
636	 67.03	0	746531..747625	+	364	83717248	-	BTH_II0639	-	lipase
637	 71.40	0	747629..748663	+	344	83716591	-	BTH_II0640	-	lipase chaperone
638	 69.03	0	748745..750265	-	506	83716848	-	BTH_II0641	-	GntR family transcriptional regulator
639	 66.76	0	750383..751495	+	370	83717491	-	BTH_II0642	-	spermidine/putrescine ABC transporter, ATP-binding protein
640	 63.59	0	751513..752616	+	367	83716052	-	BTH_II0643	-	spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
641	 66.75	0	752717..753976	+	419	83716853	-	BTH_II0644	-	spermidine/putrescine ABC transporter, permease protein
642	 65.71	0	754008..754847	+	279	83717787	-	BTH_II0645	-	polyamine ABC transporter, permease protein
643	 65.60	0	754925..756613	-	562	83717912	-	BTH_II0646	-	serine protease
644	 62.32	-1	757033..757308	-	91	83718018	-	BTH_II0647	-	hypothetical protein
645	 69.04	0	758130..758762	+	210	83716989	-	BTH_II0648	-	hypothetical protein
646	 63.00	-1	759043..760650	+	535	83717810	-	BTH_II0649	-	tyrosinase (monophenol monooxygenase)
647	 65.29	0	760766..761200	+	144	83717490	-	BTH_II0650	-	hypothetical protein
648	 68.53	0	761384..761758	+	124	83718029	-	BTH_II0651	-	hypothetical protein
649	 68.63	0	762115..763644	+	509	83717174	-	BTH_II0652	-	cytochrome c family protein
650	 63.87	0	763887..764279	+	130	83716501	-	BTH_II0653	-	cytochrome c
651	 64.09	0	764638..767355	-	905	83718192	acnA	BTH_II0654	-	aconitate hydratase
652	 68.25	0	767403..768854	-	483	83717372	prpD	BTH_II0655	-	2-methylcitrate dehydratase
653	 67.06	0	768933..769442	-	169	83716886	-	BTH_II0656	-	hypothetical protein
654	 73.53	+1	769599..770618	-	339	83716056	-	BTH_II0657	-	lyase, putative
655	 66.97	0	770816..771799	-	327	83717804	-	BTH_II0658	-	malate dehydrogenase
656	 64.63	0	771768..772898	+	376	83716990	-	BTH_II0659	-	GntR family transcriptional regulator
657	 58.03	-2	773097..773513	+	138	83716452	-	BTH_II0660	-	succinate dehydrogenase, cytochrome b556 subunit
658	 62.60	-1	773518..773886	+	122	83716544	-	BTH_II0661	-	succinate dehydrogenase, hydrophobic membrane anchor protein
659	 66.39	0	773890..775665	+	591	83718253	sdhA	BTH_II0662	-	succinate dehydrogenase flavoprotein subunit
660	 63.68	0	775687..776388	+	233	83718183	sdhB	BTH_II0663	-	succinate dehydrogenase iron-sulfur subunit
661	 64.10	0	776390..776662	+	90	83717674	-	BTH_II0664	-	TPR repeat-containing protein
662	 62.90	-1	776715..778016	+	433	83716217	gltA	BTH_II0665	-	type II citrate synthase
663	 73.58	+1	778127..779095	-	322	83718069	-	BTH_II0666	-	AraC family transcriptional regulator
664	 66.41	0	779171..779560	+	129	83716675	-	BTH_II0667	-	glyoxalase family protein family
665	 68.99	0	780146..780274	+	42	83716608	-	BTH_II0668	-	hypothetical protein
666	 70.76	0	780375..781619	+	414	83717523	-	BTH_II0669	-	dioxygenase, putative
667	 70.77	0	782223..784973	-	916	83718151	-	BTH_II0670	-	2-oxoacid dehydrogenase subunit E1
668	 62.75	-1	784972..785661	+	229	83716630	-	BTH_II0671	-	bkd operon transcriptional regulator
669	 67.59	0	785855..787264	+	469	83717109	leuC	BTH_II0672	-	isopropylmalate isomerase large subunit
670	 62.98	-1	787488..788138	+	216	83717288	leuD	BTH_II0673	-	isopropylmalate isomerase small subunit
671	 66.39	0	788252..789319	+	355	83718087	leuB	BTH_II0674	-	3-isopropylmalate dehydrogenase
672	 65.33	0	789691..790812	+	373	83716286	asd	BTH_II0675	-	aspartate-semialdehyde dehydrogenase
673	 74.48	+1	790948..793482	+	844	83716450	-	BTH_II0676	-	transmembrane protein
674	 68.27	0	793482..794294	+	270	83718190	truA	BTH_II0677	-	tRNA pseudouridine synthase A
675	 70.31	0	794294..795034	+	246	161723119	-	BTH_II0678	-	N-(5'-phosphoribosyl)anthranilate isomerase
676	 66.75	0	795104..796297	+	397	83717275	trpB	BTH_II0679	-	tryptophan synthase subunit beta
677	 65.38	0	796386..797165	+	259	83716900	-	BTH_II0680	-	N-6 adenine-specific DNA methylase
678	 70.22	0	797208..798023	+	271	83717517	trpA	BTH_II0681	-	tryptophan synthase subunit alpha
679	 66.21	0	798103..798975	+	290	83716718	accD	BTH_II0682	-	acetyl-CoA carboxylase subunit beta
680	 67.81	0	799088..800401	+	437	83716186	-	BTH_II0683	-	folylpolyglutamate synthase/dihydrofolate synthase
681	 73.28	+1	800431..801246	+	271	83717746	-	BTH_II0684	-	sporulation repeat-containing protein
682	 67.88	0	801253..801747	+	164	83716941	cvpA	BTH_II0685	-	CvpA family protein
683	 66.08	0	801800..803335	+	511	83716414	purF	BTH_II0686	-	amidophosphoribosyltransferase
684	 66.34	0	803558..804775	+	405	83718046	metZ	BTH_II0687	-	O-succinylhomoserine sulfhydrylase
685	 65.09	0	804868..805248	+	126	83716142	-	BTH_II0688	-	hypothetical protein
686	 71.72	0	805233..806201	-	322	83717405	-	BTH_II0689	-	GDP-6-deoxy-D-lyxo-4-hexulose reductase, putative
687	 64.37	0	806188..807231	-	347	83716887	gmd-2	BTH_II0690	-	GDP-mannose 4,6-dehydratase
688	 69.82	0	807267..808406	-	379	83718391	-	BTH_II0691	-	acyltransferase family protein
689	 67.53	0	808499..808729	+	76	83718060	-	BTH_II0692	-	hypothetical protein
690	 70.01	0	808877..811060	+	727	83717381	-	BTH_II0693	-	hypothetical protein
691	 67.35	0	811112..812578	+	488	83717047	-	BTH_II0694	-	polysaccharide biosynthesis family protein
692	 70.44	0	812467..815040	+	857	83716384	-	BTH_II0695	-	glycosyl transferase, group 1 family protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.