IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
555	 69.21	0	661379..662086	+	235	83716623	-	BTH_II0557	-	hypothetical protein
556	 70.07	0	662217..662951	-	244	83718158	-	BTH_II0558	-	serine/threonine protein phosphatase 1
557	 62.84	-1	663073..663726	+	217	83717989	-	BTH_II0559	-	hypothetical protein
558	 64.94	0	663892..664353	+	153	83717461	-	BTH_II0560	-	hypothetical protein
559	 71.58	0	664337..664702	+	121	83717119	-	BTH_II0561	-	ArsR family transcriptional regulator
560	 64.84	0	665637..667334	+	565	83716214	-	BTH_II0562	-	BarD
561	 61.30	-1	667331..667591	+	86	83716143	-	BTH_II0563	-	peptide synthetase, putative
562	 62.58	-1	667687..668592	+	301	83718031	-	BTH_II0564	-	BarB2
563	 67.31	0	668611..669393	+	260	83717512	-	BTH_II0565	-	BarC
564	 66.81	0	669401..670084	+	227	83716952	-	BTH_II0566	-	demethylmenaquinone methyltransferase
565	 66.67	0	670099..671043	+	314	83718030	ilvE-2	BTH_II0567	-	branched-chain amino acid aminotransferase
566	 68.33	0	671040..671882	+	280	83718278	-	BTH_II0568	-	BarC
567	 63.76	0	671879..672772	+	297	83717768	mhpF	BTH_II0569	-	acetaldehyde dehydrogenase
568	 67.24	0	672769..673812	+	347	83717692	mhpE	BTH_II0570	-	4-hydroxy-2-ketovalerate aldolase
569	 66.67	0	673854..674270	+	138	83717243	-	BTH_II0571	-	pectin degradation protein kdgF
570	 64.76	0	674334..674909	+	191	83717127	-	BTH_II0572	-	LysE family protein, putative
571	 58.53	-2	675008..675388	-	126	83716980	-	BTH_II0573	-	IS4 family transposase
572	 55.88	-2	675358..675765	-	135	83717497	-	BTH_II0574	-	transposase, putative
573	 58.43	-2	675807..676838	-	343	83716893	-	BTH_II0575	-	hypothetical protein
574	 64.68	0	677602..678456	-	284	83716446	-	BTH_II0576	-	AraC family transcriptional regulator
575	 61.11	-1	678552..679145	+	197	83718320	-	BTH_II0577	-	hypothetical protein
576	 62.26	-1	679390..679866	-	158	83717702	-	BTH_II0578	-	hypothetical protein
577	 64.73	0	680053..681291	+	412	83716716	-	BTH_II0579	-	FMN-dependent dehydrogenase
578	 65.11	0	681347..682117	-	256	83716172	-	BTH_II0580	-	ebsC protein, putative
579	 71.43	0	682124..682837	-	237	83718290	-	BTH_II0581	-	hypothetical protein
580	 70.26	0	683111..684754	+	547	83717780	-	BTH_II0582	-	alpha amylase family protein
581	 72.76	+1	684908..685498	-	196	83716807	-	BTH_II0583	-	thiamine-phosphate pyrophosphorylase ThiE, putative
582	 66.29	0	685534..686874	-	446	83716148	-	BTH_II0584	-	CBS domain-containing protein
583	 75.26	+1	686960..687739	-	259	83717830	-	BTH_II0585	-	sensor histidine kinase
584	 70.78	0	687819..688742	-	307	83717290	-	BTH_II0586	-	hypothetical protein
585	 76.03	+1	688810..689685	-	291	83716791	-	BTH_II0587	-	LysR family transcriptional regulator
586	 61.72	-1	689783..690166	+	127	83716317	-	BTH_II0588	-	tautomerase enzyme family protein
587	 73.13	+1	690373..692106	+	577	83716444	-	BTH_II0589	-	CHAD domain-contain protein
588	 69.73	0	692141..692989	+	282	83718285	-	BTH_II0590	-	transcriptional regulator ModE
589	 68.23	0	693323..694024	-	233	83717859	-	BTH_II0591	-	molybdenum ABC transporter, ATP-binding protein
590	 72.00	0	694026..694700	-	224	83717363	modB	BTH_II0592	-	molybdate ABC transporter, permease protein
591	 69.01	0	694713..695777	-	354	83717151	-	BTH_II0593	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
592	 69.96	0	695826..696524	-	232	83717687	-	BTH_II0594	-	PAP2 family protein
593	 69.77	0	696818..697912	+	364	83716634	-	BTH_II0595	-	polyhydroxybutyrate depolymerase domain-containing protein
594	 59.12	-1	698009..698167	+	52	83717010	-	BTH_II0596	-	hypothetical protein
595	 65.95	0	698281..698700	-	139	83717550	-	BTH_II0597	-	organic hydroperoxide resistance protein
596	 64.93	0	698839..699642	-	267	83718044	-	BTH_II0598	-	MarR family transcriptional regulator
597	 66.17	0	699777..700589	-	270	83717861	-	BTH_II0599	-	hypothetical protein
598	 68.37	0	700580..701575	-	331	83716177	thrB	BTH_II0600	-	homoserine kinase
599	 67.67	0	701670..702068	-	132	83716496	-	BTH_II0601	-	hypothetical protein
600	 65.82	0	702224..703750	+	508	83717216	amn	BTH_II0602	-	AMP nucleosidase
601	 66.27	0	703877..704383	-	168	83716705	-	BTH_II0603	-	hypothetical protein
602	 62.53	-1	704549..705298	-	249	83718275	-	BTH_II0604	-	decarboxylase family protein
603	 66.38	0	705300..708080	+	926	83716432	-	BTH_II0605	-	DNA polymerase I
604	 69.78	0	708397..709779	+	460	83717883	-	BTH_II0606	-	NADH dehydrogenase
605	 63.71	0	709776..710012	-	78	83716323	-	BTH_II0607	-	hypothetical protein
606	 68.73	0	710092..711888	-	598	83716874	-	BTH_II0608	-	hypothetical protein
607	 66.78	0	712653..713525	+	290	83717529	-	BTH_II0609	-	carboxymethylenebutenolidase
608	 68.62	0	713567..714436	-	289	83718316	-	BTH_II0610	-	rhodanese domain-containing protein
609	 62.24	-1	714584..715690	-	368	83717172	-	BTH_II0611	-	Rieske family iron-sulfur cluster-binding protein
610	 65.40	0	715939..716253	+	104	83717831	-	BTH_II0612	-	exodeoxyribonuclease VII small subunit
611	 71.19	0	716250..717134	+	294	83716251	-	BTH_II0613	-	geranyltranstransferase
612	 67.14	0	717219..719123	+	634	83717976	dxs	BTH_II0614	-	1-deoxy-D-xylulose-5-phosphate synthase
613	 65.47	0	719239..720072	+	277	83717706	-	BTH_II0615	-	putative GTP cyclohydrolase
614	 71.09	0	720487..721527	-	346	83717849	-	BTH_II0616	-	O-sialoglycoprotein endopeptidase
615	 70.18	0	721658..722881	+	407	83718330	-	BTH_II0617	-	hypothetical protein
616	 59.62	-1	722961..723173	+	70	83716896	rpsU	BTH_II0618	-	30S ribosomal protein S21
617	 67.79	0	723340..723786	+	148	83716247	-	BTH_II0619	-	GatB/Yqey family protein
618	 66.56	0	723883..725760	+	625	83717428	dnaG	BTH_II0620	-	DNA primase
619	 63.67	0	725844..728246	+	800	83716798	-	BTH_II0621	-	RNA polymerase sigma factor RpoD
620	 55.46	-2	728472..729542	-	356	83716149	-	BTH_II0623	-	Bbp50
621	 63.50	0	729772..731604	+	610	83717847	-	BTH_II0624	-	transposase
622	 61.40	-1	730781..731653	+	290	83717189	-	BTH_II0625	-	transposase mutator family protein
623	 52.22	-2	731844..733061	-	405	83716529	-	BTH_II0626	-	acyltransferase
624	 50.51	-2	733078..734055	-	325	83716057	-	BTH_II0627	-	hypothetical protein
625	 67.16	0	734575..735999	+	474	83717130	-	BTH_II0628	-	cytosine/purines/uracil/thiamine/allantoin permease family protein
626	 71.47	0	735996..736931	+	311	83716580	-	BTH_II0629	-	NAD-dependent deacetylase
627	 71.24	0	736894..737571	+	225	83718125	-	BTH_II0630	-	hypothetical protein
628	 66.03	0	738026..739441	+	471	83717630	gnd	BTH_II0631	-	6-phosphogluconate dehydrogenase
629	 67.87	0	739640..739972	+	110	83717812	-	BTH_II0632	-	hypothetical protein
630	 66.67	0	740366..740728	+	120	83716117	-	BTH_II0633	-	hypothetical protein
631	 71.16	0	740913..741758	+	281	83716815	-	BTH_II0634	-	lipoprotein NlpD, putative
632	 64.47	0	741874..742509	-	211	83717326	-	BTH_II0635	-	hypothetical protein
633	 63.33	0	742611..743300	+	229	83718187	-	BTH_II0636	-	cytochrome b561, putative
634	 73.74	+1	743461..743856	+	131	83717006	-	BTH_II0637	-	hypothetical protein
635	 68.21	0	743943..746204	+	753	83717103	-	BTH_II0638	-	TonB-dependent copper receptor
636	 67.03	0	746531..747625	+	364	83717248	-	BTH_II0639	-	lipase
637	 71.40	0	747629..748663	+	344	83716591	-	BTH_II0640	-	lipase chaperone
638	 69.03	0	748745..750265	-	506	83716848	-	BTH_II0641	-	GntR family transcriptional regulator
639	 66.76	0	750383..751495	+	370	83717491	-	BTH_II0642	-	spermidine/putrescine ABC transporter, ATP-binding protein
640	 63.59	0	751513..752616	+	367	83716052	-	BTH_II0643	-	spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
641	 66.75	0	752717..753976	+	419	83716853	-	BTH_II0644	-	spermidine/putrescine ABC transporter, permease protein
642	 65.71	0	754008..754847	+	279	83717787	-	BTH_II0645	-	polyamine ABC transporter, permease protein
643	 65.60	0	754925..756613	-	562	83717912	-	BTH_II0646	-	serine protease
644	 62.32	-1	757033..757308	-	91	83718018	-	BTH_II0647	-	hypothetical protein
645	 69.04	0	758130..758762	+	210	83716989	-	BTH_II0648	-	hypothetical protein
646	 63.00	-1	759043..760650	+	535	83717810	-	BTH_II0649	-	tyrosinase (monophenol monooxygenase)
647	 65.29	0	760766..761200	+	144	83717490	-	BTH_II0650	-	hypothetical protein
648	 68.53	0	761384..761758	+	124	83718029	-	BTH_II0651	-	hypothetical protein
649	 68.63	0	762115..763644	+	509	83717174	-	BTH_II0652	-	cytochrome c family protein
650	 63.87	0	763887..764279	+	130	83716501	-	BTH_II0653	-	cytochrome c
651	 64.09	0	764638..767355	-	905	83718192	acnA	BTH_II0654	-	aconitate hydratase
652	 68.25	0	767403..768854	-	483	83717372	prpD	BTH_II0655	-	2-methylcitrate dehydratase
653	 67.06	0	768933..769442	-	169	83716886	-	BTH_II0656	-	hypothetical protein
654	 73.53	+1	769599..770618	-	339	83716056	-	BTH_II0657	-	lyase, putative
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.