IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
476	 68.60	0	566647..568716	+	689	83717551	-	BTH_II0478	-	2,4-dienoyl-CoA reductase
477	 63.96	0	569228..570115	+	295	83716196	-	BTH_II0479	-	ubiquinol oxidase, subunit II
478	 63.08	-1	570119..572125	+	668	83718236	-	BTH_II0480	-	ubiquinol oxidase, subunit I
479	 66.99	0	572125..572739	+	204	83716302	-	BTH_II0481	-	cytochrome c oxidase subunit III
480	 62.76	-1	572740..573072	+	110	83718186	-	BTH_II0482	-	ubiquinol oxidase, subunit IV
481	 64.26	0	573189..573479	-	96	83718355	-	BTH_II0483	-	muconolactone delta-isomerase
482	 67.11	0	573517..574419	-	300	83717464	-	BTH_II0484	-	catechol 1,2-dioxygenase
483	 70.55	0	574451..575584	-	377	83716982	-	BTH_II0485	-	muconate cycloisomerase
484	 71.28	0	575674..576561	+	295	83716464	-	BTH_II0486	-	transcriptional regulator CatR
485	 71.54	0	576599..577624	-	341	83718301	-	BTH_II0487	-	AraC family transcriptional regulator
486	 63.54	0	577827..579104	+	425	83717772	-	BTH_II0488	-	ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB
487	 63.17	0	579119..579604	+	161	83716696	-	BTH_II0489	-	ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA
488	 66.97	0	579626..579955	+	109	83716182	-	BTH_II0490	-	Rieske family iron-sulfur cluster-binding protein
489	 74.07	+1	579942..581183	+	413	83717085	-	BTH_II0491	-	ferredoxin reductase
490	 66.91	0	581383..581799	+	138	83717878	-	BTH_II0492	-	HIT family protein
491	 69.07	0	581905..583566	-	553	83716779	-	BTH_II0493	-	phospholipase D, putative
492	 73.58	+1	583694..584272	+	192	83718141	-	BTH_II0494	-	acetyltransferase
493	 67.29	0	584302..585588	+	428	83716225	-	BTH_II0495	-	hypothetical protein
494	 69.64	0	585766..587346	+	526	83717628	-	BTH_II0496	-	Na+/H+ antiporter
495	 64.84	0	587644..589284	+	546	83718177	-	BTH_II0497	-	acetolactate synthase
496	 67.09	0	589350..590783	+	477	83716596	-	BTH_II0498	-	aldehyde dehydrogenase
497	 66.41	0	590927..591313	-	128	83717143	-	BTH_II0499	-	hypothetical protein
498	 68.77	0	592176..593270	+	364	83717649	-	BTH_II0500	-	sensor histidine kinase/response regulator
499	 67.08	0	593440..595116	+	558	83716541	-	BTH_II0501	-	methyl-accepting chemotaxis protein, putative
500	 73.60	+1	595148..595666	+	172	83717195	-	BTH_II0502	-	cheW domain-containing protein
501	 74.84	+1	595663..597729	+	688	83717558	-	BTH_II0503	-	CheR methyltransferase SAM binding/TPR domain-containing protein
502	 71.67	0	597710..598429	+	239	83718252	-	BTH_II0504	-	chemotaxis protein cheW
503	 71.59	0	598426..600924	+	832	83716826	-	BTH_II0505	-	chemotaxis sensor histidine kinase, putative
504	 72.30	+1	600931..601959	+	342	83717477	-	BTH_II0506	-	chemotaxis-specific methylesterase
505	 70.54	0	602303..603025	+	240	83717933	dehII-2	BTH_II0507	-	haloacid dehalogenase, type II
506	 71.41	0	603294..604601	+	435	83716137	-	BTH_II0508	-	voltage-gated chloride channel
507	 70.74	0	604744..606045	-	433	83717198	-	BTH_II0509	-	CAAX amino terminal protease family protein
508	 70.51	0	606029..606340	-	103	83717258	-	BTH_II0510	-	hypothetical protein
509	 68.58	0	606823..607449	-	208	83717242	-	BTH_II0511	-	hypothetical protein
510	 68.11	0	607770..608810	-	346	161723123	trpS	BTH_II0512	-	tryptophanyl-tRNA synthetase II
511	 72.59	+1	608979..610142	-	387	83718053	-	BTH_II0513	-	AraC family transcriptional regulator
512	 73.50	+1	610157..610873	+	238	83716777	-	BTH_II0514	-	DJ-1/PfpI family protein
513	 70.63	0	610959..612950	-	663	83716063	-	BTH_II0515	-	ABC transporter, permease protein/ATP-binding protein
514	 69.20	0	613178..614635	+	485	83717561	-	BTH_II0516	-	dyp-type peroxidase family protein
515	 67.25	0	615489..616691	+	400	83717841	-	BTH_II0517	-	hypothetical protein
516	 69.70	0	616862..617323	-	153	83717314	-	BTH_II0518	-	OsmC-like protein superfamily protein
517	 71.41	0	617354..618343	-	329	83716260	-	BTH_II0519	-	LysR family transcriptional regulator
518	 70.72	0	618443..619675	+	410	83717585	-	BTH_II0520	-	acyl-CoA dehydrogenase domain-containing protein
519	 70.75	0	619672..620748	+	358	83717166	-	BTH_II0521	-	phosphotransferase enzyme family protein
520	 75.94	+1	620745..621434	+	229	83716509	-	BTH_II0522	-	phosphoglycerate mutase family protein
521	 68.74	0	621468..622238	+	256	83717913	-	BTH_II0523	-	short chain dehydrogenase
522	 69.82	0	622553..623344	+	263	83717225	-	BTH_II0524	-	short chain dehydrogenase
523	 70.50	0	623602..624618	+	338	83717218	-	BTH_II0525	-	oxidoreductase, zinc-binding dehydrogenase family protein
524	 71.03	0	624835..626346	-	503	83716672	-	BTH_II0526	-	major facilitator family transporter
525	 70.34	0	626274..628451	+	725	83717289	-	BTH_II0527	-	TonB-dependent receptor
526	 63.17	0	628598..629026	+	142	83717699	-	BTH_II0528	-	putative lipoprotein
527	 63.93	0	629222..630280	-	352	83718340	-	BTH_II0529	-	hypothetical protein
528	 69.57	0	630509..631093	-	194	83717035	-	BTH_II0530	-	putative lipoprotein
529	 71.65	0	631142..631522	-	126	83717511	-	BTH_II0531	-	hypothetical protein
530	 69.72	0	632099..633967	-	622	83718276	-	BTH_II0532	-	extracellular nuclease, putative
531	 66.95	0	634336..634689	+	117	83717338	-	BTH_II0533	-	DGPF domain-containing protein
532	 65.46	0	634855..635268	+	137	83718174	-	BTH_II0534	-	DGPF domain-containing protein
533	 68.52	0	635290..635829	+	179	83717891	-	BTH_II0535	-	hypothetical protein
534	 72.89	+1	635826..637094	+	422	83717364	-	BTH_II0536	-	ECF subfamily RNA polymerase sigma factor
535	 68.67	0	637783..638730	+	315	83716809	-	BTH_II0537	-	N-acetylmuramoyl-L-alanine amidase domain-containing protein
536	 63.59	0	639001..639423	+	140	83716289	-	BTH_II0538	-	rubrerythrin
537	 66.59	0	639534..640871	+	445	83717548	-	BTH_II0539	-	hypothetical protein
538	 62.89	-1	640897..641478	+	193	83717076	-	BTH_II0540	-	hypothetical protein
539	 68.46	0	641899..643071	+	390	83716481	-	BTH_II0541	-	hypothetical protein
540	 67.52	0	643144..644658	-	504	83716616	-	BTH_II0542	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
541	 63.56	0	645087..646469	+	460	83717008	-	BTH_II0543	-	hypothetical protein
542	 68.50	0	646516..647937	+	473	83717367	-	BTH_II0544	-	UDP-glucose 6-dehydrogenase
543	 64.83	0	647959..648393	+	144	83717591	-	BTH_II0545	-	low molecular weight protein-tyrosine-phosphatase wzb
544	 66.25	0	648372..649562	+	396	83718244	-	BTH_II0546	-	capsular polysaccharide biosynthesis/export periplasmic protein
545	 67.75	0	649613..651832	+	739	83716548	-	BTH_II0547	-	exopolysaccharide tyrosine-protein kinase, putative
546	 71.20	0	651872..652819	+	315	83717741	-	BTH_II0548	-	glycosyl transferase, group 2 family protein
547	 69.74	0	652863..654002	+	379	83716146	-	BTH_II0549	-	hypothetical protein
548	 65.51	0	654014..655489	+	491	83716802	-	BTH_II0550	-	hypothetical protein
549	 68.52	0	655486..656670	+	394	83716811	-	BTH_II0551	-	glycosyltransferase
550	 70.95	0	656670..657836	+	388	83716361	-	BTH_II0552	-	lipopolysaccharide biosynthesis protein, putative
551	 70.57	0	657897..658664	-	255	83716648	-	BTH_II0553	-	AraC family transcriptional regulator
552	 66.67	0	658713..659054	-	113	83716167	fbp	BTH_II0554	-	FK506-binding protein
553	 63.70	0	659537..660445	+	302	83717797	-	BTH_II0555	-	hypothetical protein
554	 67.10	0	660465..661388	+	307	83716720	-	BTH_II0556	-	hypothetical protein
555	 69.21	0	661379..662086	+	235	83716623	-	BTH_II0557	-	hypothetical protein
556	 70.07	0	662217..662951	-	244	83718158	-	BTH_II0558	-	serine/threonine protein phosphatase 1
557	 62.84	-1	663073..663726	+	217	83717989	-	BTH_II0559	-	hypothetical protein
558	 64.94	0	663892..664353	+	153	83717461	-	BTH_II0560	-	hypothetical protein
559	 71.58	0	664337..664702	+	121	83717119	-	BTH_II0561	-	ArsR family transcriptional regulator
560	 64.84	0	665637..667334	+	565	83716214	-	BTH_II0562	-	BarD
561	 61.30	-1	667331..667591	+	86	83716143	-	BTH_II0563	-	peptide synthetase, putative
562	 62.58	-1	667687..668592	+	301	83718031	-	BTH_II0564	-	BarB2
563	 67.31	0	668611..669393	+	260	83717512	-	BTH_II0565	-	BarC
564	 66.81	0	669401..670084	+	227	83716952	-	BTH_II0566	-	demethylmenaquinone methyltransferase
565	 66.67	0	670099..671043	+	314	83718030	ilvE-2	BTH_II0567	-	branched-chain amino acid aminotransferase
566	 68.33	0	671040..671882	+	280	83718278	-	BTH_II0568	-	BarC
567	 63.76	0	671879..672772	+	297	83717768	mhpF	BTH_II0569	-	acetaldehyde dehydrogenase
568	 67.24	0	672769..673812	+	347	83717692	mhpE	BTH_II0570	-	4-hydroxy-2-ketovalerate aldolase
569	 66.67	0	673854..674270	+	138	83717243	-	BTH_II0571	-	pectin degradation protein kdgF
570	 64.76	0	674334..674909	+	191	83717127	-	BTH_II0572	-	LysE family protein, putative
571	 58.53	-2	675008..675388	-	126	83716980	-	BTH_II0573	-	IS4 family transposase
572	 55.88	-2	675358..675765	-	135	83717497	-	BTH_II0574	-	transposase, putative
573	 58.43	-2	675807..676838	-	343	83716893	-	BTH_II0575	-	hypothetical protein
574	 64.68	0	677602..678456	-	284	83716446	-	BTH_II0576	-	AraC family transcriptional regulator
575	 61.11	-1	678552..679145	+	197	83718320	-	BTH_II0577	-	hypothetical protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.