IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
432	 64.04	0	519845..521137	+	430	83716212	-	BTH_II0434	-	cytochrome P450-related protein
433	 55.88	-2	521496..521903	+	135	83716106	-	BTH_II0435	-	transposase, putative
434	 58.53	-2	521873..522253	+	126	83718217	-	BTH_II0436	-	IS4 family transposase
435	 66.04	0	522266..523390	-	374	83718005	-	BTH_II0437	-	ABC transporter, permease
436	 70.07	0	523393..526446	-	1017	83717325	-	BTH_II0438	-	RND efflux system, cytoplasmic membrane extrusion protein
437	 71.04	0	526383..527456	-	357	83717176	-	BTH_II0439	-	Type I antifreeze protein:HlyD family secretion protein
438	 72.03	+1	527453..528982	-	509	83716513	-	BTH_II0440	-	RND efflux system, outer membrane protein
439	 74.64	+1	529281..529982	+	233	83716531	-	BTH_II0441	-	TetR family transcriptional regulator
440	 67.83	0	530066..530668	+	200	83718234	-	BTH_II0442	-	universal stress protein
441	 69.84	0	530701..530952	+	83	83717573	-	BTH_II0443	-	hypothetical protein
442	 62.88	-1	530949..532085	+	378	83716316	-	BTH_II0444	-	ABC transporter, permease protein
443	 66.95	0	532088..532786	+	232	83716168	-	BTH_II0445	-	ABC transporter, ATP-binding protein
444	 68.78	0	532783..533868	+	361	83717985	-	BTH_II0446	-	membrane protein
445	 73.20	+1	533846..535330	+	494	83717425	-	BTH_II0447	-	RND efflux system outer membrane lipoprotein
446	 68.71	0	535360..536730	-	456	83717015	-	BTH_II0448	-	polysaccharide deacetylase domain-containing protein
447	 66.96	0	537136..538824	+	562	83716119	-	BTH_II0449	-	methyl-accepting chemotaxis protein
448	 70.63	0	538854..539636	+	260	83718100	-	BTH_II0450	-	adenylylsulfate kinase
449	 69.36	0	539626..539922	+	98	83718300	-	BTH_II0451	-	hypothetical protein
450	 66.40	0	539936..541078	+	380	83716768	-	BTH_II0452	-	sulfotransferase domain-containing protein
451	 69.87	0	541405..541998	+	197	83716967	-	BTH_II0453	-	OsmY domain-containing protein
452	 70.64	0	542974..543930	-	318	83716305	-	BTH_II0454	-	decarboxylase family protein
453	 63.85	0	544086..544547	+	153	83716813	-	BTH_II0455	-	hypothetical protein
454	 70.40	0	544920..545348	-	142	83716328	-	BTH_II0456	-	hypothetical protein
455	 70.16	0	545330..545845	-	171	83718021	-	BTH_II0457	-	cytochrome c family protein
456	 68.42	0	545938..546165	+	75	83717232	-	BTH_II0458	-	hypothetical protein
457	 73.25	+1	546165..547151	+	328	83717231	-	BTH_II0459	-	alcohol dehydrogenase, zinc-containing
458	 65.52	0	547304..548086	-	260	83716588	-	BTH_II0460	-	Crp/FNR family transcriptional regulator
459	 65.19	0	548754..549500	+	248	83718358	-	BTH_II0461	-	acetoacetyl-CoA reductase
460	 68.36	0	550008..551777	-	589	83717528	-	BTH_II0462	-	metallo-beta-lactamase family protein
461	 62.80	-1	552049..552954	+	301	83717745	-	BTH_II0463	-	hypothetical protein
462	 65.77	0	553484..555046	+	520	83718231	-	BTH_II0464	-	lysine-specific permease
463	 62.57	-1	555210..556430	+	406	83717294	-	BTH_II0465	-	ISBma1, transposase
464	 74.93	+1	556535..557587	-	350	83717829	-	BTH_II0466	-	hypothetical protein
465	 70.68	0	557610..558182	-	190	83717162	-	BTH_II0467	-	isochorismatase family protein
466	 67.43	0	558179..558700	-	173	83717549	-	BTH_II0468	-	MarR family transcriptional regulator
467	 70.68	0	558690..559910	+	406	83718221	-	BTH_II0469	-	carboxylesterase family protein
468	 70.69	0	559965..560759	-	264	83716228	benD	BTH_II0470	-	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
469	 70.60	0	560759..561775	-	338	83716877	-	BTH_II0471	-	benzoate 1,2-dioxygenase, ferredoxin reductase component
470	 60.57	-1	561819..562310	-	163	83717254	-	BTH_II0472	-	benzoate 1,2-dioxygenase beta subunit
471	 65.42	0	562307..563674	-	455	83716643	-	BTH_II0473	-	benzoate 1,2-dioxygenase, alpha subunit
472	 65.91	0	563891..564811	+	306	83717471	-	BTH_II0474	-	transcriptional regulator CatR
473	 76.64	+2	564831..565532	+	233	83717898	-	BTH_II0476	-	LysR family transcriptional regulator
474	 74.58	+1	564971..565147	-	58	83716821	-	BTH_II0475	-	hypothetical protein
475	 70.30	0	565486..566586	-	366	83716310	-	BTH_II0477	-	AraC family transcriptional regulator
476	 68.60	0	566647..568716	+	689	83717551	-	BTH_II0478	-	2,4-dienoyl-CoA reductase
477	 63.96	0	569228..570115	+	295	83716196	-	BTH_II0479	-	ubiquinol oxidase, subunit II
478	 63.08	-1	570119..572125	+	668	83718236	-	BTH_II0480	-	ubiquinol oxidase, subunit I
479	 66.99	0	572125..572739	+	204	83716302	-	BTH_II0481	-	cytochrome c oxidase subunit III
480	 62.76	-1	572740..573072	+	110	83718186	-	BTH_II0482	-	ubiquinol oxidase, subunit IV
481	 64.26	0	573189..573479	-	96	83718355	-	BTH_II0483	-	muconolactone delta-isomerase
482	 67.11	0	573517..574419	-	300	83717464	-	BTH_II0484	-	catechol 1,2-dioxygenase
483	 70.55	0	574451..575584	-	377	83716982	-	BTH_II0485	-	muconate cycloisomerase
484	 71.28	0	575674..576561	+	295	83716464	-	BTH_II0486	-	transcriptional regulator CatR
485	 71.54	0	576599..577624	-	341	83718301	-	BTH_II0487	-	AraC family transcriptional regulator
486	 63.54	0	577827..579104	+	425	83717772	-	BTH_II0488	-	ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB
487	 63.17	0	579119..579604	+	161	83716696	-	BTH_II0489	-	ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA
488	 66.97	0	579626..579955	+	109	83716182	-	BTH_II0490	-	Rieske family iron-sulfur cluster-binding protein
489	 74.07	+1	579942..581183	+	413	83717085	-	BTH_II0491	-	ferredoxin reductase
490	 66.91	0	581383..581799	+	138	83717878	-	BTH_II0492	-	HIT family protein
491	 69.07	0	581905..583566	-	553	83716779	-	BTH_II0493	-	phospholipase D, putative
492	 73.58	+1	583694..584272	+	192	83718141	-	BTH_II0494	-	acetyltransferase
493	 67.29	0	584302..585588	+	428	83716225	-	BTH_II0495	-	hypothetical protein
494	 69.64	0	585766..587346	+	526	83717628	-	BTH_II0496	-	Na+/H+ antiporter
495	 64.84	0	587644..589284	+	546	83718177	-	BTH_II0497	-	acetolactate synthase
496	 67.09	0	589350..590783	+	477	83716596	-	BTH_II0498	-	aldehyde dehydrogenase
497	 66.41	0	590927..591313	-	128	83717143	-	BTH_II0499	-	hypothetical protein
498	 68.77	0	592176..593270	+	364	83717649	-	BTH_II0500	-	sensor histidine kinase/response regulator
499	 67.08	0	593440..595116	+	558	83716541	-	BTH_II0501	-	methyl-accepting chemotaxis protein, putative
500	 73.60	+1	595148..595666	+	172	83717195	-	BTH_II0502	-	cheW domain-containing protein
501	 74.84	+1	595663..597729	+	688	83717558	-	BTH_II0503	-	CheR methyltransferase SAM binding/TPR domain-containing protein
502	 71.67	0	597710..598429	+	239	83718252	-	BTH_II0504	-	chemotaxis protein cheW
503	 71.59	0	598426..600924	+	832	83716826	-	BTH_II0505	-	chemotaxis sensor histidine kinase, putative
504	 72.30	+1	600931..601959	+	342	83717477	-	BTH_II0506	-	chemotaxis-specific methylesterase
505	 70.54	0	602303..603025	+	240	83717933	dehII-2	BTH_II0507	-	haloacid dehalogenase, type II
506	 71.41	0	603294..604601	+	435	83716137	-	BTH_II0508	-	voltage-gated chloride channel
507	 70.74	0	604744..606045	-	433	83717198	-	BTH_II0509	-	CAAX amino terminal protease family protein
508	 70.51	0	606029..606340	-	103	83717258	-	BTH_II0510	-	hypothetical protein
509	 68.58	0	606823..607449	-	208	83717242	-	BTH_II0511	-	hypothetical protein
510	 68.11	0	607770..608810	-	346	161723123	trpS	BTH_II0512	-	tryptophanyl-tRNA synthetase II
511	 72.59	+1	608979..610142	-	387	83718053	-	BTH_II0513	-	AraC family transcriptional regulator
512	 73.50	+1	610157..610873	+	238	83716777	-	BTH_II0514	-	DJ-1/PfpI family protein
513	 70.63	0	610959..612950	-	663	83716063	-	BTH_II0515	-	ABC transporter, permease protein/ATP-binding protein
514	 69.20	0	613178..614635	+	485	83717561	-	BTH_II0516	-	dyp-type peroxidase family protein
515	 67.25	0	615489..616691	+	400	83717841	-	BTH_II0517	-	hypothetical protein
516	 69.70	0	616862..617323	-	153	83717314	-	BTH_II0518	-	OsmC-like protein superfamily protein
517	 71.41	0	617354..618343	-	329	83716260	-	BTH_II0519	-	LysR family transcriptional regulator
518	 70.72	0	618443..619675	+	410	83717585	-	BTH_II0520	-	acyl-CoA dehydrogenase domain-containing protein
519	 70.75	0	619672..620748	+	358	83717166	-	BTH_II0521	-	phosphotransferase enzyme family protein
520	 75.94	+1	620745..621434	+	229	83716509	-	BTH_II0522	-	phosphoglycerate mutase family protein
521	 68.74	0	621468..622238	+	256	83717913	-	BTH_II0523	-	short chain dehydrogenase
522	 69.82	0	622553..623344	+	263	83717225	-	BTH_II0524	-	short chain dehydrogenase
523	 70.50	0	623602..624618	+	338	83717218	-	BTH_II0525	-	oxidoreductase, zinc-binding dehydrogenase family protein
524	 71.03	0	624835..626346	-	503	83716672	-	BTH_II0526	-	major facilitator family transporter
525	 70.34	0	626274..628451	+	725	83717289	-	BTH_II0527	-	TonB-dependent receptor
526	 63.17	0	628598..629026	+	142	83717699	-	BTH_II0528	-	putative lipoprotein
527	 63.93	0	629222..630280	-	352	83718340	-	BTH_II0529	-	hypothetical protein
528	 69.57	0	630509..631093	-	194	83717035	-	BTH_II0530	-	putative lipoprotein
529	 71.65	0	631142..631522	-	126	83717511	-	BTH_II0531	-	hypothetical protein
530	 69.72	0	632099..633967	-	622	83718276	-	BTH_II0532	-	extracellular nuclease, putative
531	 66.95	0	634336..634689	+	117	83717338	-	BTH_II0533	-	DGPF domain-containing protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.