IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.58   STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
386	 67.18	0	459995..462901	-	968	83716241	-	BTH_II0388	-	hypothetical protein
387	 62.68	-1	462969..464021	-	350	83717648	-	BTH_II0389	-	deoxyribonuclease II superfamilyprotein
388	 64.41	0	464850..466133	-	427	83716598	-	BTH_II0390	-	cation efflux system protein
389	 60.87	-1	466146..466421	-	91	83716600	-	BTH_II0391	-	hypothetical protein
390	 67.43	0	466752..467144	-	130	83717756	-	BTH_II0392	-	signal peptide protein
391	 63.80	0	467421..468605	-	394	83716230	-	BTH_II0393	-	hypothetical protein
392	 67.77	0	469078..471441	-	787	83717919	-	BTH_II0394	-	exopolysaccharide tyrosine-protein kinase, putative
393	 68.37	0	471565..472917	-	450	83717552	-	BTH_II0395	-	hypothetical protein
394	 68.60	0	472925..474268	-	447	83718228	-	BTH_II0396	-	hypothetical protein
395	 67.45	0	475013..476296	-	427	83716516	-	BTH_II0397	-	hypothetical protein
396	 72.26	+1	476386..478191	-	601	83718254	-	BTH_II0398	-	putative lipoprotein
397	 67.86	0	478710..480719	-	669	83717441	-	BTH_II0399	-	serine protease
398	 67.33	0	481581..482030	-	149	83718353	-	BTH_II0400	-	hypothetical protein
399	 68.44	0	482160..483683	-	507	83716350	-	BTH_II0401	-	GGDEF domain-containing protein
400	 68.72	0	484399..485373	-	324	83716105	-	BTH_II0402	-	alpha/beta fold family hydrolase
401	 68.11	0	485379..486977	-	532	83716767	-	BTH_II0403	-	arylesterase/monoxygenase
402	 69.53	0	486974..487882	-	302	83717397	-	BTH_II0404	-	short chain dehydrogenase/reductase family oxidoreductase
403	 67.56	0	487971..488639	+	222	83718063	-	BTH_II0405	-	TetR family transcriptional regulator
404	 73.64	+1	488731..489648	-	305	83716587	-	BTH_II0406	-	LysR family transcriptional regulator
405	 72.48	+1	489861..490514	+	217	83717112	-	BTH_II0407	-	glutathione S-transferase
406	 72.92	+1	490568..493030	+	820	83716785	-	BTH_II0408	-	pyridoxamine 5'-phosphate oxidase family protein
407	 68.38	0	493337..494617	+	426	83717567	-	BTH_II0409	-	nucleoside transporter
408	 71.88	0	494631..495416	+	261	83716906	deoC	BTH_II0410	-	deoxyribose-phosphate aldolase
409	 58.33	-2	495905..496084	-	59	83716237	-	BTH_II0411	-	beta-lactoglobulin I
410	 73.09	+1	496790..498112	+	440	161723117	deoA	BTH_II0412	-	thymidine phosphorylase
411	 68.96	0	498364..498756	+	130	83717194	cdd	BTH_II0413	-	cytidine deaminase
412	 69.44	0	499102..499749	+	215	83716163	-	BTH_II0414	-	OsmY domain-containing protein
413	 74.17	+1	499887..500939	+	350	83718264	-	BTH_II0415	-	6-phosphofructokinase
414	 72.09	+1	501281..502459	-	392	83717626	ackA	BTH_II0416	-	acetate kinase
415	 71.72	0	502456..503859	-	467	83716345	-	BTH_II0417	-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
416	 69.18	0	503870..505900	-	676	83717003	-	BTH_II0418	-	poly-beta-hydroxybutyrate polymerase
417	 74.07	+1	506003..507541	+	512	83716757	atpD-2	BTH_II0419	-	F0F1 ATP synthase subunit beta
418	 73.03	+1	507531..507986	+	151	83717414	-	BTH_II0420	-	F0F1 ATP synthase subunit epsilon
419	 76.89	+2	507983..508471	+	162	83718336	-	BTH_II0421	-	ATP synthase gene 1, putative
420	 76.33	+1	508473..508772	+	99	83716042	-	BTH_II0422	-	putative lipoprotein
421	 68.95	0	508769..509470	+	233	83717157	atpB-2	BTH_II0423	-	F0F1 ATP synthase subunit A
422	 68.27	0	509467..509715	+	82	83717652	-	BTH_II0424	-	F0F1 ATP synthase subunit C
423	 75.33	+1	509729..510478	+	249	83718068	-	BTH_II0425	-	ATP synthase F0, B subunit
424	 73.67	+1	510462..512132	+	556	83718145	atpA-2	BTH_II0426	-	F0F1 ATP synthase subunit alpha
425	 73.73	+1	512129..512977	+	282	83718112	atpG-2	BTH_II0427	-	ATP synthase F1, gamma subunit
426	 66.96	0	513183..514208	+	341	83716700	-	BTH_II0428	-	alcohol dehydrogenase, zinc-containing
427	 61.19	-1	514305..514742	+	145	83717107	-	BTH_II0429	-	hypothetical protein
428	 64.04	0	514883..515683	-	266	83718373	-	BTH_II0430	-	hypothetical protein
429	 62.22	-1	515757..517016	-	419	83717566	-	BTH_II0431	-	transposase mutator family protein
430	 66.67	0	518303..518419	-	38	83716870	-	BTH_II0432	-	hypothetical protein
431	 63.88	0	518671..519603	-	310	83716201	-	BTH_II0433	-	hypothetical protein
432	 64.04	0	519845..521137	+	430	83716212	-	BTH_II0434	-	cytochrome P450-related protein
433	 55.88	-2	521496..521903	+	135	83716106	-	BTH_II0435	-	transposase, putative
434	 58.53	-2	521873..522253	+	126	83718217	-	BTH_II0436	-	IS4 family transposase
435	 66.04	0	522266..523390	-	374	83718005	-	BTH_II0437	-	ABC transporter, permease
436	 70.07	0	523393..526446	-	1017	83717325	-	BTH_II0438	-	RND efflux system, cytoplasmic membrane extrusion protein
437	 71.04	0	526383..527456	-	357	83717176	-	BTH_II0439	-	Type I antifreeze protein:HlyD family secretion protein
438	 72.03	+1	527453..528982	-	509	83716513	-	BTH_II0440	-	RND efflux system, outer membrane protein
439	 74.64	+1	529281..529982	+	233	83716531	-	BTH_II0441	-	TetR family transcriptional regulator
440	 67.83	0	530066..530668	+	200	83718234	-	BTH_II0442	-	universal stress protein
441	 69.84	0	530701..530952	+	83	83717573	-	BTH_II0443	-	hypothetical protein
442	 62.88	-1	530949..532085	+	378	83716316	-	BTH_II0444	-	ABC transporter, permease protein
443	 66.95	0	532088..532786	+	232	83716168	-	BTH_II0445	-	ABC transporter, ATP-binding protein
444	 68.78	0	532783..533868	+	361	83717985	-	BTH_II0446	-	membrane protein
445	 73.20	+1	533846..535330	+	494	83717425	-	BTH_II0447	-	RND efflux system outer membrane lipoprotein
446	 68.71	0	535360..536730	-	456	83717015	-	BTH_II0448	-	polysaccharide deacetylase domain-containing protein
447	 66.96	0	537136..538824	+	562	83716119	-	BTH_II0449	-	methyl-accepting chemotaxis protein
448	 70.63	0	538854..539636	+	260	83718100	-	BTH_II0450	-	adenylylsulfate kinase
449	 69.36	0	539626..539922	+	98	83718300	-	BTH_II0451	-	hypothetical protein
450	 66.40	0	539936..541078	+	380	83716768	-	BTH_II0452	-	sulfotransferase domain-containing protein
451	 69.87	0	541405..541998	+	197	83716967	-	BTH_II0453	-	OsmY domain-containing protein
452	 70.64	0	542974..543930	-	318	83716305	-	BTH_II0454	-	decarboxylase family protein
453	 63.85	0	544086..544547	+	153	83716813	-	BTH_II0455	-	hypothetical protein
454	 70.40	0	544920..545348	-	142	83716328	-	BTH_II0456	-	hypothetical protein
455	 70.16	0	545330..545845	-	171	83718021	-	BTH_II0457	-	cytochrome c family protein
456	 68.42	0	545938..546165	+	75	83717232	-	BTH_II0458	-	hypothetical protein
457	 73.25	+1	546165..547151	+	328	83717231	-	BTH_II0459	-	alcohol dehydrogenase, zinc-containing
458	 65.52	0	547304..548086	-	260	83716588	-	BTH_II0460	-	Crp/FNR family transcriptional regulator
459	 65.19	0	548754..549500	+	248	83718358	-	BTH_II0461	-	acetoacetyl-CoA reductase
460	 68.36	0	550008..551777	-	589	83717528	-	BTH_II0462	-	metallo-beta-lactamase family protein
461	 62.80	-1	552049..552954	+	301	83717745	-	BTH_II0463	-	hypothetical protein
462	 65.77	0	553484..555046	+	520	83718231	-	BTH_II0464	-	lysine-specific permease
463	 62.57	-1	555210..556430	+	406	83717294	-	BTH_II0465	-	ISBma1, transposase
464	 74.93	+1	556535..557587	-	350	83717829	-	BTH_II0466	-	hypothetical protein
465	 70.68	0	557610..558182	-	190	83717162	-	BTH_II0467	-	isochorismatase family protein
466	 67.43	0	558179..558700	-	173	83717549	-	BTH_II0468	-	MarR family transcriptional regulator
467	 70.68	0	558690..559910	+	406	83718221	-	BTH_II0469	-	carboxylesterase family protein
468	 70.69	0	559965..560759	-	264	83716228	benD	BTH_II0470	-	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
469	 70.60	0	560759..561775	-	338	83716877	-	BTH_II0471	-	benzoate 1,2-dioxygenase, ferredoxin reductase component
470	 60.57	-1	561819..562310	-	163	83717254	-	BTH_II0472	-	benzoate 1,2-dioxygenase beta subunit
471	 65.42	0	562307..563674	-	455	83716643	-	BTH_II0473	-	benzoate 1,2-dioxygenase, alpha subunit
472	 65.91	0	563891..564811	+	306	83717471	-	BTH_II0474	-	transcriptional regulator CatR
473	 76.64	+2	564831..565532	+	233	83717898	-	BTH_II0476	-	LysR family transcriptional regulator
474	 74.58	+1	564971..565147	-	58	83716821	-	BTH_II0475	-	hypothetical protein
475	 70.30	0	565486..566586	-	366	83716310	-	BTH_II0477	-	AraC family transcriptional regulator
476	 68.60	0	566647..568716	+	689	83717551	-	BTH_II0478	-	2,4-dienoyl-CoA reductase
477	 63.96	0	569228..570115	+	295	83716196	-	BTH_II0479	-	ubiquinol oxidase, subunit II
478	 63.08	-1	570119..572125	+	668	83718236	-	BTH_II0480	-	ubiquinol oxidase, subunit I
479	 66.99	0	572125..572739	+	204	83716302	-	BTH_II0481	-	cytochrome c oxidase subunit III
480	 62.76	-1	572740..573072	+	110	83718186	-	BTH_II0482	-	ubiquinol oxidase, subunit IV
481	 64.26	0	573189..573479	-	96	83718355	-	BTH_II0483	-	muconolactone delta-isomerase
482	 67.11	0	573517..574419	-	300	83717464	-	BTH_II0484	-	catechol 1,2-dioxygenase
483	 70.55	0	574451..575584	-	377	83716982	-	BTH_II0485	-	muconate cycloisomerase
484	 71.28	0	575674..576561	+	295	83716464	-	BTH_II0486	-	transcriptional regulator CatR
485	 71.54	0	576599..577624	-	341	83718301	-	BTH_II0487	-	AraC family transcriptional regulator
67.58	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.