IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
342	 71.46	0	418359..419609	+	416	83718247	-	BTH_II0344	-	putative lipoprotein
343	 67.67	0	419621..420421	+	266	83717541	-	BTH_II0345	-	hypothetical protein
344	 63.59	0	420745..422892	+	715	83716510	-	BTH_II0346	-	hypothetical protein
345	 69.82	0	422889..424061	+	390	83717196	-	BTH_II0347	-	hypothetical protein
346	 67.66	0	424106..425923	+	605	83716539	glmS-2	BTH_II0348	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
347	 62.14	-1	426274..427047	-	257	83717950	-	BTH_II0349	-	short chain dehydrogenase/reductase family oxidoreductase
348	 66.22	0	427198..428085	+	295	83717454	-	BTH_II0350	-	LysR family transcriptional regulator
349	 62.96	-1	428174..428308	+	44	83716904	-	BTH_II0351	-	hypothetical protein
350	 55.62	-2	428980..429486	+	168	83716382	-	BTH_II0352	-	thermoresistant gluconokinase
351	 53.89	-2	429534..430832	+	432	83718367	-	BTH_II0353	-	major facilitator family transporter
352	 55.88	-2	430917..431324	+	135	83717099	-	BTH_II0354	-	transposase, putative
353	 58.53	-2	431294..431674	+	126	83716690	-	BTH_II0355	-	IS4 family transposase
354	 59.18	-1	431951..432217	+	88	83717032	-	BTH_II0356	-	IS407A, transposase OrfA
355	 60.08	-1	432031..432531	+	166	83716746	-	BTH_II0357	-	putative transposase
356	 62.22	-1	432555..433814	+	419	83717711	-	BTH_II0358	-	transposase mutator family protein
357	 57.47	-2	434146..434721	-	191	83716303	-	BTH_II0359	-	hypothetical protein
358	 62.99	-1	434705..435058	-	117	83716964	-	BTH_II0360	-	carboxymuconolactone decarboxylase
359	 59.77	-1	435462..435809	-	115	83718272	-	BTH_II0361	-	hypothetical protein
360	 60.03	-1	435827..436534	-	235	83717349	-	BTH_II0362	-	succinate dehydrogenase, iron-sulfur protein
361	 52.74	-2	436888..437088	-	66	83717971	-	BTH_II0363	-	hypothetical protein
362	 56.99	-2	437267..437638	-	123	83716925	-	BTH_II0364	-	hypothetical protein
363	 64.15	0	438445..439041	-	198	83717535	-	BTH_II0365	-	RC180
364	 62.50	-1	439734..440621	-	295	83717446	-	BTH_II0366	-	transposase
365	 62.84	-1	440579..440944	-	121	83716530	-	BTH_II0367	-	transposase
366	 67.18	0	441011..441205	+	64	83717017	-	BTH_II0368	-	hypothetical protein
367	 64.21	0	441986..442351	+	121	83717271	-	BTH_II0369	-	hypothetical protein
368	 66.08	0	442438..443292	+	284	83718392	-	BTH_II0370	-	hypothetical protein
369	 68.12	0	443132..443338	+	68	83716047	-	BTH_II0371	-	hypothetical protein
370	 65.27	0	443404..443904	+	166	83716772	-	BTH_II0372	-	beta-lactamase
371	 64.44	0	443933..444742	+	269	83716841	oxa	BTH_II0373	-	beta-lactamase precursor
372	 65.50	0	444896..445237	-	113	83717844	-	BTH_II0374	-	hypothetical protein
373	 65.15	0	445388..446839	-	483	83717886	-	BTH_II0375	-	sensor protein irlS
374	 63.78	0	446839..447531	-	230	83716332	-	BTH_II0376	-	DNA-binding response regulator IrlR
375	 56.14	-2	447609..447893	-	94	83716844	-	BTH_II0377	-	hypothetical protein
376	 61.11	-1	448054..448377	+	107	83717673	-	BTH_II0378	-	hypothetical protein
377	 69.78	0	448966..450474	+	502	83717656	-	BTH_II0379	-	serine metalloprotease precursor
378	 70.80	0	450529..452706	+	725	83718167	-	BTH_II0380	-	x-prolyl-dipeptidyl aminopeptidase
379	 69.19	0	452842..453516	-	224	83716775	-	BTH_II0381	-	uracil DNA glycosylase superfamily protein
380	 63.75	0	453749..454501	+	250	83717108	-	BTH_II0382	-	hypothetical protein
381	 65.45	0	454602..455756	-	384	83717268	-	BTH_II0383	-	hypothetical protein
382	 64.86	0	455779..456717	-	312	83716492	-	BTH_II0384	-	hypothetical protein
383	 66.54	0	456793..458415	-	540	83718137	-	BTH_II0385	-	Ser/Thr protein phosphatase family protein family
384	 69.65	0	458416..459219	-	267	83716419	-	BTH_II0386	-	hypothetical protein
385	 67.43	0	459216..459998	-	260	83716193	-	BTH_II0387	-	hypothetical protein
386	 67.18	0	459995..462901	-	968	83716241	-	BTH_II0388	-	hypothetical protein
387	 62.68	-1	462969..464021	-	350	83717648	-	BTH_II0389	-	deoxyribonuclease II superfamilyprotein
388	 64.41	0	464850..466133	-	427	83716598	-	BTH_II0390	-	cation efflux system protein
389	 60.87	-1	466146..466421	-	91	83716600	-	BTH_II0391	-	hypothetical protein
390	 67.43	0	466752..467144	-	130	83717756	-	BTH_II0392	-	signal peptide protein
391	 63.80	0	467421..468605	-	394	83716230	-	BTH_II0393	-	hypothetical protein
392	 67.77	0	469078..471441	-	787	83717919	-	BTH_II0394	-	exopolysaccharide tyrosine-protein kinase, putative
393	 68.37	0	471565..472917	-	450	83717552	-	BTH_II0395	-	hypothetical protein
394	 68.60	0	472925..474268	-	447	83718228	-	BTH_II0396	-	hypothetical protein
395	 67.45	0	475013..476296	-	427	83716516	-	BTH_II0397	-	hypothetical protein
396	 72.26	+1	476386..478191	-	601	83718254	-	BTH_II0398	-	putative lipoprotein
397	 67.86	0	478710..480719	-	669	83717441	-	BTH_II0399	-	serine protease
398	 67.33	0	481581..482030	-	149	83718353	-	BTH_II0400	-	hypothetical protein
399	 68.44	0	482160..483683	-	507	83716350	-	BTH_II0401	-	GGDEF domain-containing protein
400	 68.72	0	484399..485373	-	324	83716105	-	BTH_II0402	-	alpha/beta fold family hydrolase
401	 68.11	0	485379..486977	-	532	83716767	-	BTH_II0403	-	arylesterase/monoxygenase
402	 69.53	0	486974..487882	-	302	83717397	-	BTH_II0404	-	short chain dehydrogenase/reductase family oxidoreductase
403	 67.56	0	487971..488639	+	222	83718063	-	BTH_II0405	-	TetR family transcriptional regulator
404	 73.64	+1	488731..489648	-	305	83716587	-	BTH_II0406	-	LysR family transcriptional regulator
405	 72.48	+1	489861..490514	+	217	83717112	-	BTH_II0407	-	glutathione S-transferase
406	 72.92	+1	490568..493030	+	820	83716785	-	BTH_II0408	-	pyridoxamine 5'-phosphate oxidase family protein
407	 68.38	0	493337..494617	+	426	83717567	-	BTH_II0409	-	nucleoside transporter
408	 71.88	0	494631..495416	+	261	83716906	deoC	BTH_II0410	-	deoxyribose-phosphate aldolase
409	 58.33	-2	495905..496084	-	59	83716237	-	BTH_II0411	-	beta-lactoglobulin I
410	 73.09	+1	496790..498112	+	440	161723117	deoA	BTH_II0412	-	thymidine phosphorylase
411	 68.96	0	498364..498756	+	130	83717194	cdd	BTH_II0413	-	cytidine deaminase
412	 69.44	0	499102..499749	+	215	83716163	-	BTH_II0414	-	OsmY domain-containing protein
413	 74.17	+1	499887..500939	+	350	83718264	-	BTH_II0415	-	6-phosphofructokinase
414	 72.09	+1	501281..502459	-	392	83717626	ackA	BTH_II0416	-	acetate kinase
415	 71.72	0	502456..503859	-	467	83716345	-	BTH_II0417	-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
416	 69.18	0	503870..505900	-	676	83717003	-	BTH_II0418	-	poly-beta-hydroxybutyrate polymerase
417	 74.07	+1	506003..507541	+	512	83716757	atpD-2	BTH_II0419	-	F0F1 ATP synthase subunit beta
418	 73.03	+1	507531..507986	+	151	83717414	-	BTH_II0420	-	F0F1 ATP synthase subunit epsilon
419	 76.89	+2	507983..508471	+	162	83718336	-	BTH_II0421	-	ATP synthase gene 1, putative
420	 76.33	+1	508473..508772	+	99	83716042	-	BTH_II0422	-	putative lipoprotein
421	 68.95	0	508769..509470	+	233	83717157	atpB-2	BTH_II0423	-	F0F1 ATP synthase subunit A
422	 68.27	0	509467..509715	+	82	83717652	-	BTH_II0424	-	F0F1 ATP synthase subunit C
423	 75.33	+1	509729..510478	+	249	83718068	-	BTH_II0425	-	ATP synthase F0, B subunit
424	 73.67	+1	510462..512132	+	556	83718145	atpA-2	BTH_II0426	-	F0F1 ATP synthase subunit alpha
425	 73.73	+1	512129..512977	+	282	83718112	atpG-2	BTH_II0427	-	ATP synthase F1, gamma subunit
426	 66.96	0	513183..514208	+	341	83716700	-	BTH_II0428	-	alcohol dehydrogenase, zinc-containing
427	 61.19	-1	514305..514742	+	145	83717107	-	BTH_II0429	-	hypothetical protein
428	 64.04	0	514883..515683	-	266	83718373	-	BTH_II0430	-	hypothetical protein
429	 62.22	-1	515757..517016	-	419	83717566	-	BTH_II0431	-	transposase mutator family protein
430	 66.67	0	518303..518419	-	38	83716870	-	BTH_II0432	-	hypothetical protein
431	 63.88	0	518671..519603	-	310	83716201	-	BTH_II0433	-	hypothetical protein
432	 64.04	0	519845..521137	+	430	83716212	-	BTH_II0434	-	cytochrome P450-related protein
433	 55.88	-2	521496..521903	+	135	83716106	-	BTH_II0435	-	transposase, putative
434	 58.53	-2	521873..522253	+	126	83718217	-	BTH_II0436	-	IS4 family transposase
435	 66.04	0	522266..523390	-	374	83718005	-	BTH_II0437	-	ABC transporter, permease
436	 70.07	0	523393..526446	-	1017	83717325	-	BTH_II0438	-	RND efflux system, cytoplasmic membrane extrusion protein
437	 71.04	0	526383..527456	-	357	83717176	-	BTH_II0439	-	Type I antifreeze protein:HlyD family secretion protein
438	 72.03	+1	527453..528982	-	509	83716513	-	BTH_II0440	-	RND efflux system, outer membrane protein
439	 74.64	+1	529281..529982	+	233	83716531	-	BTH_II0441	-	TetR family transcriptional regulator
440	 67.83	0	530066..530668	+	200	83718234	-	BTH_II0442	-	universal stress protein
441	 69.84	0	530701..530952	+	83	83717573	-	BTH_II0443	-	hypothetical protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.