IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
306	 68.33	0	375597..377522	+	641	83717761	-	BTH_II0307	-	carbohydrate kinase
307	 58.33	-2	377553..377732	+	59	83718268	-	BTH_II0308	-	hypothetical protein
308	 66.53	0	377857..379278	+	473	83716086	-	BTH_II0309	-	sphingosine-1-phosphate lyase
309	 64.65	0	379615..380307	-	230	83716914	-	BTH_II0310	-	antifungal protein precursor, putative
310	 65.19	0	380699..382120	+	473	83718034	-	BTH_II0311	-	sphingosine-1-phosphate lyase
311	 69.26	0	382415..382993	-	192	83717056	-	BTH_II0312	-	hypothetical protein
312	 63.89	0	383053..383376	-	107	83717747	-	BTH_II0313	-	hypothetical protein
313	 65.34	0	383482..384237	-	251	83718284	-	BTH_II0314	-	inner membrane protein
314	 72.74	+1	384348..385253	+	301	83718121	nhaR	BTH_II0315	-	transcriptional activator protein NhaR
315	 70.17	0	385281..385823	-	180	83717921	hpaC	BTH_II0316	-	4-hydroxyphenylacetate 3-monooxygenase, reductase component
316	 64.81	0	386078..386830	+	250	83716609	-	BTH_II0317	-	LuxR family DNA-binding response regulator
317	 62.60	-1	386893..388368	-	491	83716889	-	BTH_II0318	-	putative oxidoreductase, oxygen dependent, FAD-dependent protein
318	 68.82	0	388614..389357	-	247	83717431	-	BTH_II0319	-	3-oxoacyl-acyl carrier protein reductase
319	 73.32	+1	389432..390559	-	375	83718103	-	BTH_II0320	-	pyrazinamidase/nicotinamidase
320	 71.59	0	390590..391117	-	175	83716970	-	BTH_II0321	-	hypothetical protein
321	 68.75	0	391315..391698	-	127	83717676	-	BTH_II0322	-	hypothetical protein
322	 73.02	+1	391819..393015	-	398	83718348	-	BTH_II0323	-	phenol hydroxylase, putative
323	 70.12	0	393427..394728	+	433	83717193	-	BTH_II0324	-	sensory box histidine kinase, putative
324	 69.78	0	394773..395222	-	149	83716956	-	BTH_II0325	-	putative tautomerase
325	 67.66	0	395235..395735	-	166	83717595	-	BTH_II0326	-	ring hydroxylating beta subunit
326	 66.51	0	395732..397015	-	427	83718159	-	BTH_II0327	-	benzoate 1,2-dioxygenase, alpha subunit
327	 68.95	0	397170..398090	+	306	83716312	-	BTH_II0328	-	LysR family transcriptional regulator
328	 68.84	0	398524..399489	-	321	83717111	-	BTH_II0329	-	oxidoreductase
329	 66.33	0	399978..401465	-	495	83717643	pad	BTH_II0330	-	phenylacetaldehyde dehydrogenase
330	 67.80	0	401482..403155	-	557	83716139	-	BTH_II0331	-	GMC oxidoreductase
331	 68.00	0	403444..404871	-	475	83716652	-	BTH_II0332	-	major facilitator superfamily transporter phthalate permease
332	 68.12	0	405234..406331	+	365	83716188	-	BTH_II0333	-	outer membrane porin, putative
333	 71.78	0	406328..407383	-	351	83716999	-	BTH_II0334	-	LysR family transcriptional regulator
334	 73.88	+1	407380..408447	-	355	83716335	-	BTH_II0335	-	AraC family transcriptional regulator
335	 71.82	0	408633..409739	+	368	83718389	-	BTH_II0336	-	hypothetical protein
336	 71.30	0	409751..410743	+	330	83717842	-	BTH_II0337	-	3-hydroxybutyryl-CoA dehydrogenase
337	 70.12	0	410887..412188	-	433	83717302	-	BTH_II0338	-	major facilitator family transporter
338	 68.27	0	413300..414730	-	476	83717331	wecB	BTH_II0340	-	UDP-N-acetylglucosamine 2-epimerase
339	 75.98	+1	414927..415130	-	67	83717001	-	BTH_II0341	-	ribosomal protein L15
340	 68.51	0	415448..417349	+	633	83716324	-	BTH_II0342	-	glycosyl transferase, group 2 family protein, putative
341	 72.83	+1	417389..418345	+	318	83718335	-	BTH_II0343	-	hypothetical protein
342	 71.46	0	418359..419609	+	416	83718247	-	BTH_II0344	-	putative lipoprotein
343	 67.67	0	419621..420421	+	266	83717541	-	BTH_II0345	-	hypothetical protein
344	 63.59	0	420745..422892	+	715	83716510	-	BTH_II0346	-	hypothetical protein
345	 69.82	0	422889..424061	+	390	83717196	-	BTH_II0347	-	hypothetical protein
346	 67.66	0	424106..425923	+	605	83716539	glmS-2	BTH_II0348	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
347	 62.14	-1	426274..427047	-	257	83717950	-	BTH_II0349	-	short chain dehydrogenase/reductase family oxidoreductase
348	 66.22	0	427198..428085	+	295	83717454	-	BTH_II0350	-	LysR family transcriptional regulator
349	 62.96	-1	428174..428308	+	44	83716904	-	BTH_II0351	-	hypothetical protein
350	 55.62	-2	428980..429486	+	168	83716382	-	BTH_II0352	-	thermoresistant gluconokinase
351	 53.89	-2	429534..430832	+	432	83718367	-	BTH_II0353	-	major facilitator family transporter
352	 55.88	-2	430917..431324	+	135	83717099	-	BTH_II0354	-	transposase, putative
353	 58.53	-2	431294..431674	+	126	83716690	-	BTH_II0355	-	IS4 family transposase
354	 59.18	-1	431951..432217	+	88	83717032	-	BTH_II0356	-	IS407A, transposase OrfA
355	 60.08	-1	432031..432531	+	166	83716746	-	BTH_II0357	-	putative transposase
356	 62.22	-1	432555..433814	+	419	83717711	-	BTH_II0358	-	transposase mutator family protein
357	 57.47	-2	434146..434721	-	191	83716303	-	BTH_II0359	-	hypothetical protein
358	 62.99	-1	434705..435058	-	117	83716964	-	BTH_II0360	-	carboxymuconolactone decarboxylase
359	 59.77	-1	435462..435809	-	115	83718272	-	BTH_II0361	-	hypothetical protein
360	 60.03	-1	435827..436534	-	235	83717349	-	BTH_II0362	-	succinate dehydrogenase, iron-sulfur protein
361	 52.74	-2	436888..437088	-	66	83717971	-	BTH_II0363	-	hypothetical protein
362	 56.99	-2	437267..437638	-	123	83716925	-	BTH_II0364	-	hypothetical protein
363	 64.15	0	438445..439041	-	198	83717535	-	BTH_II0365	-	RC180
364	 62.50	-1	439734..440621	-	295	83717446	-	BTH_II0366	-	transposase
365	 62.84	-1	440579..440944	-	121	83716530	-	BTH_II0367	-	transposase
366	 67.18	0	441011..441205	+	64	83717017	-	BTH_II0368	-	hypothetical protein
367	 64.21	0	441986..442351	+	121	83717271	-	BTH_II0369	-	hypothetical protein
368	 66.08	0	442438..443292	+	284	83718392	-	BTH_II0370	-	hypothetical protein
369	 68.12	0	443132..443338	+	68	83716047	-	BTH_II0371	-	hypothetical protein
370	 65.27	0	443404..443904	+	166	83716772	-	BTH_II0372	-	beta-lactamase
371	 64.44	0	443933..444742	+	269	83716841	oxa	BTH_II0373	-	beta-lactamase precursor
372	 65.50	0	444896..445237	-	113	83717844	-	BTH_II0374	-	hypothetical protein
373	 65.15	0	445388..446839	-	483	83717886	-	BTH_II0375	-	sensor protein irlS
374	 63.78	0	446839..447531	-	230	83716332	-	BTH_II0376	-	DNA-binding response regulator IrlR
375	 56.14	-2	447609..447893	-	94	83716844	-	BTH_II0377	-	hypothetical protein
376	 61.11	-1	448054..448377	+	107	83717673	-	BTH_II0378	-	hypothetical protein
377	 69.78	0	448966..450474	+	502	83717656	-	BTH_II0379	-	serine metalloprotease precursor
378	 70.80	0	450529..452706	+	725	83718167	-	BTH_II0380	-	x-prolyl-dipeptidyl aminopeptidase
379	 69.19	0	452842..453516	-	224	83716775	-	BTH_II0381	-	uracil DNA glycosylase superfamily protein
380	 63.75	0	453749..454501	+	250	83717108	-	BTH_II0382	-	hypothetical protein
381	 65.45	0	454602..455756	-	384	83717268	-	BTH_II0383	-	hypothetical protein
382	 64.86	0	455779..456717	-	312	83716492	-	BTH_II0384	-	hypothetical protein
383	 66.54	0	456793..458415	-	540	83718137	-	BTH_II0385	-	Ser/Thr protein phosphatase family protein family
384	 69.65	0	458416..459219	-	267	83716419	-	BTH_II0386	-	hypothetical protein
385	 67.43	0	459216..459998	-	260	83716193	-	BTH_II0387	-	hypothetical protein
386	 67.18	0	459995..462901	-	968	83716241	-	BTH_II0388	-	hypothetical protein
387	 62.68	-1	462969..464021	-	350	83717648	-	BTH_II0389	-	deoxyribonuclease II superfamilyprotein
388	 64.41	0	464850..466133	-	427	83716598	-	BTH_II0390	-	cation efflux system protein
389	 60.87	-1	466146..466421	-	91	83716600	-	BTH_II0391	-	hypothetical protein
390	 67.43	0	466752..467144	-	130	83717756	-	BTH_II0392	-	signal peptide protein
391	 63.80	0	467421..468605	-	394	83716230	-	BTH_II0393	-	hypothetical protein
392	 67.77	0	469078..471441	-	787	83717919	-	BTH_II0394	-	exopolysaccharide tyrosine-protein kinase, putative
393	 68.37	0	471565..472917	-	450	83717552	-	BTH_II0395	-	hypothetical protein
394	 68.60	0	472925..474268	-	447	83718228	-	BTH_II0396	-	hypothetical protein
395	 67.45	0	475013..476296	-	427	83716516	-	BTH_II0397	-	hypothetical protein
396	 72.26	+1	476386..478191	-	601	83718254	-	BTH_II0398	-	putative lipoprotein
397	 67.86	0	478710..480719	-	669	83717441	-	BTH_II0399	-	serine protease
398	 67.33	0	481581..482030	-	149	83718353	-	BTH_II0400	-	hypothetical protein
399	 68.44	0	482160..483683	-	507	83716350	-	BTH_II0401	-	GGDEF domain-containing protein
400	 68.72	0	484399..485373	-	324	83716105	-	BTH_II0402	-	alpha/beta fold family hydrolase
401	 68.11	0	485379..486977	-	532	83716767	-	BTH_II0403	-	arylesterase/monoxygenase
402	 69.53	0	486974..487882	-	302	83717397	-	BTH_II0404	-	short chain dehydrogenase/reductase family oxidoreductase
403	 67.56	0	487971..488639	+	222	83718063	-	BTH_II0405	-	TetR family transcriptional regulator
404	 73.64	+1	488731..489648	-	305	83716587	-	BTH_II0406	-	LysR family transcriptional regulator
405	 72.48	+1	489861..490514	+	217	83717112	-	BTH_II0407	-	glutathione S-transferase
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.