IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.58   STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
259	 65.81	0	317896..319404	+	502	83717013	-	BTH_II0259	-	hypothetical protein
260	 64.63	0	319462..319953	+	163	83717048	-	BTH_II0260	-	hypothetical protein
261	 74.15	+1	319972..320532	+	186	83716379	-	BTH_II0261	-	hypothetical protein
262	 71.21	0	320537..322408	+	623	83717522	-	BTH_II0262	-	hypothetical protein
263	 74.14	+1	322405..323688	+	427	83716780	-	BTH_II0263	-	hypothetical protein
264	 70.58	0	323701..326358	+	885	83717896	-	BTH_II0264	-	ClpA/B type protease
265	 64.75	0	326364..328559	+	731	83717324	-	BTH_II0265	-	Rhs element Vgr protein
266	 66.51	0	328575..329840	+	421	83716814	-	BTH_II0266	-	hypothetical protein
267	 61.32	-1	329863..334482	+	1539	83716862	-	BTH_II0267	-	rhsD protein
268	 52.25	-2	334616..334726	-	36	83718106	-	BTH_II0268	-	isrso7-transposase protein
269	 61.75	-1	334727..334909	-	60	83716429	-	BTH_II0269	-	transposase
270	 59.10	-1	334964..335452	-	162	83716583	-	BTH_II0270	-	putative transposase
271	 61.07	-1	335205..336473	-	422	83717124	-	BTH_II0271	-	transposase mutator family protein
272	 63.36	0	336667..337332	-	221	83717766	-	BTH_II0272	-	HAD-superfamily hydrolase
273	 62.59	-1	337540..338127	-	195	83716564	-	BTH_II0273	-	hypothetical protein
274	 69.43	0	338605..339510	-	301	83717145	-	BTH_II0274	-	hypothetical protein
275	 65.71	0	339583..340002	-	139	83716805	-	BTH_II0275	-	comA operon protein 2
276	 69.08	0	340016..341878	-	620	83717253	-	BTH_II0276	-	AMP-binding domain-containing protein
277	 67.93	0	341875..342900	-	341	83716261	-	BTH_II0277	-	amidohydrolase
278	 72.53	+1	342941..343981	-	346	83717126	-	BTH_II0278	-	JamB
279	 65.49	0	343978..344913	-	311	83716784	-	BTH_II0279	-	methoxy mycolic acid synthase 2
280	 60.70	-1	344926..345210	-	94	83716295	-	BTH_II0280	-	polyketide synthase, putative
281	 68.21	0	345236..346270	-	344	83717334	-	BTH_II0281	-	JamB
282	 69.48	0	346913..347941	-	342	83716794	-	BTH_II0282	-	AraC family transcriptional regulator
283	 69.28	0	348017..348667	+	216	83716304	-	BTH_II0283	-	isochorismatase family protein family
284	 69.98	0	348926..350587	-	553	83718025	-	BTH_II0284	-	long-chain-fatty-acid-CoA ligase, putative
285	 68.81	0	350911..351795	-	294	83716978	-	BTH_II0285	-	hypothetical protein
286	 73.51	+1	351829..353802	-	657	83716445	-	BTH_II0286	-	acetyl-/propionyl-coenzyme a carboxylase alpha chain
287	 74.38	+1	353853..354695	-	280	83718289	-	BTH_II0287	-	enoyl-CoA hydratase/isomerase family protein
288	 66.32	0	354702..355853	-	383	83717376	-	BTH_II0288	-	acyl-CoA dehydrogenase
289	 69.57	0	355866..357482	-	538	83716733	-	BTH_II0289	-	acetyl-CoA carboxylase carboxyltransferase
290	 70.15	0	357484..358344	-	286	83716072	-	BTH_II0291	-	2-deoxy-D-gluconate 3-dehydrogenase
291	 67.77	0	358650..359822	+	390	83718162	-	BTH_II0292	-	acyl-CoA dehydrogenase
292	 67.69	0	360119..360799	+	226	83717366	-	BTH_II0293	-	TetR family transcriptional regulator
293	 59.30	-1	361305..362363	-	352	83717135	-	BTH_II0294	-	putative transcription regulator protein
294	 68.43	0	362716..364413	-	565	83716351	-	BTH_II0295	-	EmrB/QacA family drug resistance transporter
295	 65.43	0	364459..365592	-	377	83717278	-	BTH_II0296	-	hypothetical protein
296	 66.88	0	365714..366634	-	306	83717710	-	BTH_II0297	-	lpqC, putative
297	 67.29	0	366739..367383	-	214	83716232	-	BTH_II0298	-	hypothetical protein
298	 62.32	-1	367699..369171	-	490	83718156	-	BTH_II0299	-	putative coproporphyrinogen III oxidase
299	 70.24	0	369277..369864	-	195	83717450	-	BTH_II0300	-	hypothetical protein
300	 67.31	0	370681..371454	+	257	83717297	-	BTH_II0301	-	UbiE/COQ5 family methlytransferase
301	 63.46	0	371832..372299	+	155	83717778	-	BTH_II0302	-	hypothetical protein
302	 63.67	0	372337..373170	+	277	83718283	-	BTH_II0303	-	hypothetical protein
303	 59.11	-1	373217..373507	+	96	83716430	-	BTH_II0304	-	ThiS domain-containing protein
304	 67.31	0	373513..374748	+	411	83717632	-	BTH_II0305	-	isovaleryl-CoA dehydrogenase, putative
305	 63.66	0	374752..375582	+	276	83717771	-	BTH_II0306	-	hypothetical protein
306	 68.33	0	375597..377522	+	641	83717761	-	BTH_II0307	-	carbohydrate kinase
307	 58.33	-2	377553..377732	+	59	83718268	-	BTH_II0308	-	hypothetical protein
308	 66.53	0	377857..379278	+	473	83716086	-	BTH_II0309	-	sphingosine-1-phosphate lyase
309	 64.65	0	379615..380307	-	230	83716914	-	BTH_II0310	-	antifungal protein precursor, putative
310	 65.19	0	380699..382120	+	473	83718034	-	BTH_II0311	-	sphingosine-1-phosphate lyase
311	 69.26	0	382415..382993	-	192	83717056	-	BTH_II0312	-	hypothetical protein
312	 63.89	0	383053..383376	-	107	83717747	-	BTH_II0313	-	hypothetical protein
313	 65.34	0	383482..384237	-	251	83718284	-	BTH_II0314	-	inner membrane protein
314	 72.74	+1	384348..385253	+	301	83718121	nhaR	BTH_II0315	-	transcriptional activator protein NhaR
315	 70.17	0	385281..385823	-	180	83717921	hpaC	BTH_II0316	-	4-hydroxyphenylacetate 3-monooxygenase, reductase component
316	 64.81	0	386078..386830	+	250	83716609	-	BTH_II0317	-	LuxR family DNA-binding response regulator
317	 62.60	-1	386893..388368	-	491	83716889	-	BTH_II0318	-	putative oxidoreductase, oxygen dependent, FAD-dependent protein
318	 68.82	0	388614..389357	-	247	83717431	-	BTH_II0319	-	3-oxoacyl-acyl carrier protein reductase
319	 73.32	+1	389432..390559	-	375	83718103	-	BTH_II0320	-	pyrazinamidase/nicotinamidase
320	 71.59	0	390590..391117	-	175	83716970	-	BTH_II0321	-	hypothetical protein
321	 68.75	0	391315..391698	-	127	83717676	-	BTH_II0322	-	hypothetical protein
322	 73.02	+1	391819..393015	-	398	83718348	-	BTH_II0323	-	phenol hydroxylase, putative
323	 70.12	0	393427..394728	+	433	83717193	-	BTH_II0324	-	sensory box histidine kinase, putative
324	 69.78	0	394773..395222	-	149	83716956	-	BTH_II0325	-	putative tautomerase
325	 67.66	0	395235..395735	-	166	83717595	-	BTH_II0326	-	ring hydroxylating beta subunit
326	 66.51	0	395732..397015	-	427	83718159	-	BTH_II0327	-	benzoate 1,2-dioxygenase, alpha subunit
327	 68.95	0	397170..398090	+	306	83716312	-	BTH_II0328	-	LysR family transcriptional regulator
328	 68.84	0	398524..399489	-	321	83717111	-	BTH_II0329	-	oxidoreductase
329	 66.33	0	399978..401465	-	495	83717643	pad	BTH_II0330	-	phenylacetaldehyde dehydrogenase
330	 67.80	0	401482..403155	-	557	83716139	-	BTH_II0331	-	GMC oxidoreductase
331	 68.00	0	403444..404871	-	475	83716652	-	BTH_II0332	-	major facilitator superfamily transporter phthalate permease
332	 68.12	0	405234..406331	+	365	83716188	-	BTH_II0333	-	outer membrane porin, putative
333	 71.78	0	406328..407383	-	351	83716999	-	BTH_II0334	-	LysR family transcriptional regulator
334	 73.88	+1	407380..408447	-	355	83716335	-	BTH_II0335	-	AraC family transcriptional regulator
335	 71.82	0	408633..409739	+	368	83718389	-	BTH_II0336	-	hypothetical protein
336	 71.30	0	409751..410743	+	330	83717842	-	BTH_II0337	-	3-hydroxybutyryl-CoA dehydrogenase
337	 70.12	0	410887..412188	-	433	83717302	-	BTH_II0338	-	major facilitator family transporter
338	 68.27	0	413300..414730	-	476	83717331	wecB	BTH_II0340	-	UDP-N-acetylglucosamine 2-epimerase
339	 75.98	+1	414927..415130	-	67	83717001	-	BTH_II0341	-	ribosomal protein L15
340	 68.51	0	415448..417349	+	633	83716324	-	BTH_II0342	-	glycosyl transferase, group 2 family protein, putative
341	 72.83	+1	417389..418345	+	318	83718335	-	BTH_II0343	-	hypothetical protein
342	 71.46	0	418359..419609	+	416	83718247	-	BTH_II0344	-	putative lipoprotein
343	 67.67	0	419621..420421	+	266	83717541	-	BTH_II0345	-	hypothetical protein
344	 63.59	0	420745..422892	+	715	83716510	-	BTH_II0346	-	hypothetical protein
345	 69.82	0	422889..424061	+	390	83717196	-	BTH_II0347	-	hypothetical protein
346	 67.66	0	424106..425923	+	605	83716539	glmS-2	BTH_II0348	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
347	 62.14	-1	426274..427047	-	257	83717950	-	BTH_II0349	-	short chain dehydrogenase/reductase family oxidoreductase
348	 66.22	0	427198..428085	+	295	83717454	-	BTH_II0350	-	LysR family transcriptional regulator
349	 62.96	-1	428174..428308	+	44	83716904	-	BTH_II0351	-	hypothetical protein
350	 55.62	-2	428980..429486	+	168	83716382	-	BTH_II0352	-	thermoresistant gluconokinase
351	 53.89	-2	429534..430832	+	432	83718367	-	BTH_II0353	-	major facilitator family transporter
352	 55.88	-2	430917..431324	+	135	83717099	-	BTH_II0354	-	transposase, putative
353	 58.53	-2	431294..431674	+	126	83716690	-	BTH_II0355	-	IS4 family transposase
354	 59.18	-1	431951..432217	+	88	83717032	-	BTH_II0356	-	IS407A, transposase OrfA
355	 60.08	-1	432031..432531	+	166	83716746	-	BTH_II0357	-	putative transposase
356	 62.22	-1	432555..433814	+	419	83717711	-	BTH_II0358	-	transposase mutator family protein
357	 57.47	-2	434146..434721	-	191	83716303	-	BTH_II0359	-	hypothetical protein
358	 62.99	-1	434705..435058	-	117	83716964	-	BTH_II0360	-	carboxymuconolactone decarboxylase
67.58	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.