IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.58   STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
195	 72.10	+1	226471..227538	+	355	83717252	-	BTH_II0195	-	hypothetical protein
196	 66.92	0	227653..228054	+	133	83716355	-	BTH_II0196	-	hypothetical protein
197	 63.28	0	228094..228861	-	255	83716239	-	BTH_II0197	-	transcriptional regulator, putative
198	 57.72	-2	231062..231754	+	230	83717719	-	BTH_II0198	-	DNA-binding response regulator
199	 58.50	-2	231957..232250	-	97	83718376	-	BTH_II0199	-	H-NS histone family protein
200	 68.48	0	232965..234290	+	441	83716102	-	BTH_II0200	-	major facilitator family transporter
201	 75.61	+1	234365..235549	+	394	83716231	-	BTH_II0201	-	glycerate kinase
202	 70.72	0	235608..237062	+	484	83718223	pyk-2	BTH_II0202	-	pyruvate kinase
203	 71.55	0	237154..238362	+	402	83717559	-	BTH_II0203	-	carbohydrate diacid regulator
204	 68.16	0	239300..242251	+	983	83716490	-	BTH_II0204	-	peptide synthetase, putative
205	 69.43	0	242291..243268	+	325	83717292	-	BTH_II0205	-	hypothetical protein
206	 68.43	0	243292..243687	+	131	83717817	-	BTH_II0206	-	hypothetical protein
207	 68.13	0	243841..244866	+	341	83716646	-	BTH_II0207	-	hypothetical protein
208	 68.68	0	244934..246322	-	462	83716280	-	BTH_II0208	-	GGDEF domain-containing protein
209	 65.08	0	247314..248258	-	314	83718224	-	BTH_II0209	-	ribose ABC transporter, periplasmic ribose-binding protein
210	 69.90	0	248338..249357	-	339	83717568	-	BTH_II0210	-	ribose ABC transporter, permease protein
211	 69.82	0	249412..250965	-	517	83717329	-	BTH_II0211	-	ribose ABC transporter, ATP-binding protein
212	 71.54	0	250952..252202	-	416	83716917	-	BTH_II0212	-	transcription regulator ROK family protein
213	 67.08	0	253045..255690	-	881	83717267	-	BTH_II0213	-	glucan 1,4- a-glucosidase
214	 68.88	0	256014..257411	-	465	161723115	-	BTH_II0214	-	ATP-dependent RNA helicase DbpA
215	 64.58	0	257620..258768	-	382	83716388	-	BTH_II0215	-	outer membrane porin OpcP
216	 70.85	0	259034..260347	-	437	83717150	-	BTH_II0216	-	major facilitator family transporter
217	 70.19	0	260388..261578	-	396	83717682	-	BTH_II0217	-	hippurate hydolase
218	 68.77	0	261762..262664	+	300	83716129	-	BTH_II0218	-	LysR family transcriptional regulator
219	 74.19	+1	262935..263771	-	278	83716638	-	BTH_II0219	-	hypothetical protein
220	 68.88	0	263907..265079	+	390	83716134	-	BTH_II0220	-	fatty acid desaturase domain-containing protein
221	 71.78	0	265156..265977	+	273	83716856	-	BTH_II0221	-	hypothetical protein
222	 62.67	-1	266516..267415	-	299	83717385	-	BTH_II0222	-	glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein
223	 71.67	0	267561..268898	-	445	83717946	-	BTH_II0223	-	D-amino acid dehydrogenase, small subunit
224	 72.04	+1	268931..269860	-	309	83717418	-	BTH_II0224	-	LysR family transcriptional regulator
225	 71.15	0	269956..270891	-	311	83718093	-	BTH_II0225	-	short chain dehydrogenase
226	 62.84	-1	271109..271474	+	121	83716349	-	BTH_II0226	-	hypothetical protein
227	 65.96	0	271634..273769	+	711	83717737	-	BTH_II0227	-	hypothetical protein
228	 67.98	0	274067..276961	+	964	83718372	-	BTH_II0228	-	alpha-1,2-mannosidase family protein
229	 66.01	0	277580..278641	+	353	83716637	-	BTH_II0229	-	pyoverdine chromophore biosynthetic protein PvcA
230	 68.31	0	278638..279549	+	303	83718140	pvcB	BTH_II0230	-	pyoverdine biosynthesis protein PvcB
231	 66.73	0	279575..281080	+	501	83717205	-	BTH_II0231	-	pyoverdin chromophore biosynthetic protein PvcC
232	 69.18	0	281105..282973	+	622	83718070	asnB-1	BTH_II0232	-	asparagine synthase (glutamine-hydrolyzing)
233	 70.47	0	283002..283973	+	323	83717308	-	BTH_II0233	-	quinone oxidoreductase
234	 68.34	0	283921..284937	+	338	83718071	-	BTH_II0234	-	class III extradiol-type catecholic dioxygenase, putative
235	 64.91	0	284996..286360	-	454	83717382	-	BTH_II0235	-	LysR family transcriptional regulator
236	 65.23	0	287110..287526	+	138	83717038	-	BTH_II0236	-	hypothetical protein
237	 70.16	0	288326..289414	+	362	83716405	-	BTH_II0237	-	hypothetical protein
238	 70.13	0	289407..290387	+	326	83718382	-	BTH_II0238	-	pyruvate dehydrogenase E1 beta subunit
239	 73.01	+1	290392..291495	+	367	83717179	-	BTH_II0239	-	branched-chain alpha-keto acid dehydrogenase subunit E2
240	 74.01	+1	291420..292127	-	235	83717582	-	BTH_II0240	-	L-lactate dehydrogenase
241	 68.13	0	292278..293852	-	524	83716340	-	BTH_II0241	-	major facilitator family transporter
242	 66.57	0	294046..295089	-	347	83716683	-	BTH_II0242	-	isochorismatase
243	 65.35	0	295181..296089	+	302	83716184	-	BTH_II0243	-	LysR family transcriptional regulator
244	 69.60	0	296377..297330	-	317	83718032	-	BTH_II0244	-	LysR family transcriptional regulator
245	 72.66	+1	297421..298755	+	444	83717457	dsdA	BTH_II0245	-	D-serine dehydratase
246	 70.68	0	299015..299911	-	298	83716438	-	BTH_II0246	-	LysR family transcriptional regulator
247	 71.63	0	300115..300819	+	234	83717769	-	BTH_II0247	-	short chain dehydrogenase/reductase family oxidoreductase
248	 71.72	0	301071..303068	+	665	83717274	-	BTH_II0248	-	putative lipoprotein
249	 70.86	0	303044..304426	-	460	83717306	-	BTH_II0249	-	FHA domain-containing protein
250	 64.16	0	304544..304942	-	132	83717834	-	BTH_II0250	-	putative lipoprotein
251	 66.28	0	305598..306116	+	172	83716922	-	BTH_II0251	-	putative lipoprotein
252	 69.51	0	306113..307519	+	468	83717553	-	BTH_II0252	-	hypothetical protein
253	 73.29	+1	307535..308848	+	437	83718191	-	BTH_II0253	-	hypothetical protein
254	 71.10	0	308851..312480	+	1209	83716527	-	BTH_II0254	-	putative lipoprotein
255	 73.13	+1	312486..313352	+	288	83716732	-	BTH_II0255	-	hypothetical protein
256	 73.54	+1	313510..316143	+	877	83716861	-	BTH_II0256	-	serine/threonine protein kinase
257	 74.08	+1	316196..317260	+	354	83717862	-	BTH_II0257	-	ImpA-like N-terminal family protein
258	 66.67	0	317322..317903	+	193	83717683	-	BTH_II0258	-	hypothetical protein
259	 65.81	0	317896..319404	+	502	83717013	-	BTH_II0259	-	hypothetical protein
260	 64.63	0	319462..319953	+	163	83717048	-	BTH_II0260	-	hypothetical protein
261	 74.15	+1	319972..320532	+	186	83716379	-	BTH_II0261	-	hypothetical protein
262	 71.21	0	320537..322408	+	623	83717522	-	BTH_II0262	-	hypothetical protein
263	 74.14	+1	322405..323688	+	427	83716780	-	BTH_II0263	-	hypothetical protein
264	 70.58	0	323701..326358	+	885	83717896	-	BTH_II0264	-	ClpA/B type protease
265	 64.75	0	326364..328559	+	731	83717324	-	BTH_II0265	-	Rhs element Vgr protein
266	 66.51	0	328575..329840	+	421	83716814	-	BTH_II0266	-	hypothetical protein
267	 61.32	-1	329863..334482	+	1539	83716862	-	BTH_II0267	-	rhsD protein
268	 52.25	-2	334616..334726	-	36	83718106	-	BTH_II0268	-	isrso7-transposase protein
269	 61.75	-1	334727..334909	-	60	83716429	-	BTH_II0269	-	transposase
270	 59.10	-1	334964..335452	-	162	83716583	-	BTH_II0270	-	putative transposase
271	 61.07	-1	335205..336473	-	422	83717124	-	BTH_II0271	-	transposase mutator family protein
272	 63.36	0	336667..337332	-	221	83717766	-	BTH_II0272	-	HAD-superfamily hydrolase
273	 62.59	-1	337540..338127	-	195	83716564	-	BTH_II0273	-	hypothetical protein
274	 69.43	0	338605..339510	-	301	83717145	-	BTH_II0274	-	hypothetical protein
275	 65.71	0	339583..340002	-	139	83716805	-	BTH_II0275	-	comA operon protein 2
276	 69.08	0	340016..341878	-	620	83717253	-	BTH_II0276	-	AMP-binding domain-containing protein
277	 67.93	0	341875..342900	-	341	83716261	-	BTH_II0277	-	amidohydrolase
278	 72.53	+1	342941..343981	-	346	83717126	-	BTH_II0278	-	JamB
279	 65.49	0	343978..344913	-	311	83716784	-	BTH_II0279	-	methoxy mycolic acid synthase 2
280	 60.70	-1	344926..345210	-	94	83716295	-	BTH_II0280	-	polyketide synthase, putative
281	 68.21	0	345236..346270	-	344	83717334	-	BTH_II0281	-	JamB
282	 69.48	0	346913..347941	-	342	83716794	-	BTH_II0282	-	AraC family transcriptional regulator
283	 69.28	0	348017..348667	+	216	83716304	-	BTH_II0283	-	isochorismatase family protein family
284	 69.98	0	348926..350587	-	553	83718025	-	BTH_II0284	-	long-chain-fatty-acid-CoA ligase, putative
285	 68.81	0	350911..351795	-	294	83716978	-	BTH_II0285	-	hypothetical protein
286	 73.51	+1	351829..353802	-	657	83716445	-	BTH_II0286	-	acetyl-/propionyl-coenzyme a carboxylase alpha chain
287	 74.38	+1	353853..354695	-	280	83718289	-	BTH_II0287	-	enoyl-CoA hydratase/isomerase family protein
288	 66.32	0	354702..355853	-	383	83717376	-	BTH_II0288	-	acyl-CoA dehydrogenase
289	 69.57	0	355866..357482	-	538	83716733	-	BTH_II0289	-	acetyl-CoA carboxylase carboxyltransferase
290	 70.15	0	357484..358344	-	286	83716072	-	BTH_II0291	-	2-deoxy-D-gluconate 3-dehydrogenase
291	 67.77	0	358650..359822	+	390	83718162	-	BTH_II0292	-	acyl-CoA dehydrogenase
292	 67.69	0	360119..360799	+	226	83717366	-	BTH_II0293	-	TetR family transcriptional regulator
293	 59.30	-1	361305..362363	-	352	83717135	-	BTH_II0294	-	putative transcription regulator protein
294	 68.43	0	362716..364413	-	565	83716351	-	BTH_II0295	-	EmrB/QacA family drug resistance transporter
67.58	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.