IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2248	 69.96	0	2775346..2776590	-	414	83716743	-	BTH_II2262	-	hypothetical protein
2249	 55.56	-2	2777694..2777864	+	56	83717167	-	BTH_II2263	-	PilA-related protein
2250	 63.93	0	2777972..2778190	+	72	83717974	-	BTH_II2264	-	Flp/Fap pilin component superfamily protein
2251	 72.96	+1	2778282..2778821	+	179	83718194	-	BTH_II2265	-	peptidase, putative
2252	 70.35	0	2778863..2780245	+	460	83718049	-	BTH_II2266	-	ATPase with chaperone activity, putative
2253	 70.24	0	2780291..2781130	+	279	83717368	-	BTH_II2267	-	pilus assembly protein
2254	 74.07	+1	2781243..2783282	+	679	83716099	-	BTH_II2268	-	type II and III secretion system protein
2255	 69.28	0	2783304..2783609	+	101	83718384	-	BTH_II2269	-	hypothetical protein
2256	 67.14	0	2783635..2784891	+	418	83717579	-	BTH_II2270	-	hypothetical protein
2257	 66.67	0	2784915..2785457	+	180	83717072	-	BTH_II2271	-	hypothetical protein
2258	 68.40	0	2785454..2785915	+	153	83716499	-	BTH_II2272	-	hypothetical protein
2259	 70.55	0	2785938..2787146	+	402	83717074	cpaE	BTH_II2273	-	putative pilus assembly protein CpaE
2260	 67.25	0	2787168..2788535	+	455	83716156	-	BTH_II2274	-	type II secretion system protein
2261	 66.97	0	2788546..2789523	+	325	83716413	-	BTH_II2275	-	Flp pilus assembly protein TadB
2262	 69.92	0	2789647..2790537	+	296	83718164	-	BTH_II2276	-	hypothetical protein
2263	 55.88	-2	2790943..2791350	+	135	83718380	-	BTH_II2277	-	transposase, putative
2264	 58.53	-2	2791320..2791700	+	126	83718101	-	BTH_II2278	-	IS4 family transposase
2265	 63.43	0	2791713..2792237	-	174	83717383	-	BTH_II2279	-	AsnC family transcriptional regulator
2266	 70.28	0	2792427..2793644	+	405	161723125	-	BTH_II2280	-	aromatic amino acid aminotransferase
2267	 70.95	0	2793704..2794333	+	209	83718315	-	BTH_II2281	-	translation initiation inhibitor
2268	 68.90	0	2794498..2795571	+	357	83717499	-	BTH_II2282	-	porin
2269	 67.65	0	2795654..2797084	+	476	83717889	-	BTH_II2283	-	amino acid permease
2270	 73.26	+1	2797145..2798464	-	439	83717416	-	BTH_II2284	-	GntR family transcriptional regulator
2271	 71.54	0	2798582..2800120	-	512	83716744	-	BTH_II2285	-	MlrC C-terminus family protein
2272	 65.98	0	2800117..2801424	-	435	83716803	-	BTH_II2286	-	major facilitator family transporter
2273	 63.13	-1	2801535..2802467	+	310	83716081	-	BTH_II2287	-	nitrogen assimilation regulatory protein Nac, putative
2274	 65.30	0	2802796..2804922	-	708	83718075	-	BTH_II2288	-	hypothetical protein
2275	 70.08	0	2805466..2805993	+	175	83717392	-	BTH_II2289	-	hypothetical protein
2276	 70.23	0	2806395..2807291	-	298	83716367	-	BTH_II2290	-	MipA family MltA-interacting protein
2277	 67.42	0	2807591..2808250	-	219	83716222	-	BTH_II2292	-	hypothetical protein
2278	 70.54	0	2808858..2809193	-	111	83718139	-	BTH_II2293	-	phosphatidylserine decarboxylase, putative
2279	 69.22	0	2809190..2810089	-	299	83717791	-	BTH_II2294	-	2-hydroxy-3-oxopropionate reductase
2280	 66.89	0	2810208..2811557	-	449	83718304	-	BTH_II2295	-	nitrilotriacetate monooxygenase component A
2281	 69.73	0	2811820..2812635	-	271	83716738	-	BTH_II2296	-	4-phosphopantetheinyl transferase family protein
2282	 69.19	0	2812761..2814347	-	528	83717983	-	BTH_II2297	-	hypothetical protein
2283	 73.72	+1	2814378..2815058	-	226	83717442	-	BTH_II2298	-	flavin reductase domain-containing protein
2284	 72.44	+1	2815058..2815438	-	126	83716930	-	BTH_II2299	-	hypothetical protein
2285	 68.55	0	2815767..2817095	-	442	83717004	-	BTH_II2300	-	hypothetical protein
2286	 70.38	0	2817575..2818975	-	466	83717960	lpdA-2	BTH_II2301	-	dihydrolipoamide dehydrogenase
2287	 71.97	0	2818980..2820431	-	483	83716049	-	BTH_II2302	-	branched-chain alpha-keto acid dehydrogenase subunit E2
2288	 67.91	0	2820433..2821476	-	347	83716737	-	BTH_II2303	-	2-oxoisovalerate dehydrogenase, E1 component, beta subunit
2289	 67.07	0	2821482..2822714	-	410	83717236	-	BTH_II2304	-	2-oxoisovalerate dehydrogenase, E1 component, alpha subunit
2290	 69.61	0	2823191..2824480	+	429	83718009	-	BTH_II2305	-	hypothetical protein
2291	 64.40	0	2824799..2825371	+	190	83717538	-	BTH_II2306	-	hypothetical protein
2292	 68.10	0	2825622..2826737	-	371	83718347	-	BTH_II2307	-	hypothetical protein
2293	 67.74	0	2827041..2827976	+	311	83717619	-	BTH_II2308	-	LysR family transcriptional regulator
2294	 69.15	0	2828407..2830497	+	696	83718281	-	BTH_II2309	-	iron-sulfur cluster-binding domain-containing protein
2295	 69.79	0	2830711..2832984	-	757	83716250	-	BTH_II2310	-	pyridine nucleotide-disulphide oxidoreductase family protein
2296	 71.46	0	2833036..2833431	-	131	83716934	-	BTH_II2311	-	C4-type zinc finger DksA/TraR family protein
2297	 73.35	+1	2834374..2835645	+	423	83717460	-	BTH_II2312	-	intracellular polyhydroxyalkanoate depolymerase
2298	 74.68	+1	2835700..2837547	+	615	83717836	-	BTH_II2313	-	hypothetical protein
2299	 73.62	+1	2837585..2839426	+	613	83716385	-	BTH_II2314	-	hypothetical protein
2300	 70.64	0	2839740..2840771	+	343	83716810	-	BTH_II2315	-	hypothetical protein
2301	 73.93	+1	2840768..2842585	+	605	83718381	-	BTH_II2316	-	sulfate permease family protein
2302	 68.44	0	2842617..2843066	-	149	83716336	-	BTH_II2317	-	CBS domain-containing protein
2303	 70.34	0	2843391..2844044	+	217	83717255	-	BTH_II2318	-	hypothetical protein
2304	 67.68	0	2844115..2844312	+	65	83716873	-	BTH_II2319	-	hypothetical protein
2305	 72.40	+1	2844339..2844530	+	63	83717533	-	BTH_II2320	-	hypothetical protein
2306	 68.42	0	2844523..2846064	-	513	83716278	-	BTH_II2321	-	stress response protein
2307	 70.53	0	2846158..2847090	+	310	83716498	-	BTH_II2322	-	polysaccharide deacetylase family protein
2308	 71.21	0	2847404..2848789	+	461	83717223	-	BTH_II2323	-	hypothetical protein
2309	 71.11	0	2848811..2851174	-	787	83716830	-	BTH_II2324	-	1A family penicillin-binding protein
2310	 74.21	+1	2851592..2852002	-	136	83716326	-	BTH_II2325	-	putative lipoprotein
2311	 58.40	-2	2852169..2852870	-	233	83716827	-	BTH_II2326	-	hypothetical protein
2312	 57.66	-2	2852873..2853316	-	147	83716224	-	BTH_II2327	-	hypothetical protein
2313	 66.03	0	2853351..2853824	-	157	83716601	-	BTH_II2328	-	hypothetical protein
2314	 70.00	0	2853817..2854326	-	169	83718144	-	BTH_II2329	-	hypothetical protein
2315	 70.42	0	2854323..2854748	-	141	83717234	-	BTH_II2330	-	PAAR motif-containing protein
2316	 73.38	+1	2855425..2857047	-	540	83717180	-	BTH_II2331	-	amidase
2317	 66.95	0	2857097..2857801	+	234	83716124	-	BTH_II2332	-	putative lipoprotein
2318	 71.72	0	2857767..2858300	-	177	83716662	-	BTH_II2333	-	hydrophobe/amphiphile efflux family protein
2319	 68.86	0	2858348..2859760	+	470	83717988	-	BTH_II2334	-	sensor histidine kinase
2320	 67.90	0	2859757..2860404	+	215	83717466	-	BTH_II2335	-	LuxR family DNA-binding response regulator
2321	 66.50	0	2860542..2861138	-	198	83716763	-	BTH_II2336	-	Ttg2 family toluene tolerance protein
2322	 66.13	0	2861429..2862169	-	246	83717556	-	BTH_II2337	-	hypothetical protein
2323	 65.92	0	2862202..2864604	-	800	83718235	-	BTH_II2338	-	sensory box protein
2324	 67.39	0	2864960..2866063	-	367	83716483	-	BTH_II2339	-	lipase
2325	 70.87	0	2866151..2866816	-	221	83717678	-	BTH_II2340	-	4-phosphopantetheinyl transferase family protein
2326	 66.92	0	2866987..2867385	-	132	83717897	-	BTH_II2341	-	hypothetical protein
2327	 70.52	0	2867424..2868722	-	432	83716037	-	BTH_II2342	-	hypothetical protein
2328	 66.03	0	2868719..2869501	-	260	83716674	-	BTH_II2343	-	hypothetical protein
2329	 69.04	0	2869558..2870991	-	477	83717341	-	BTH_II2344	-	ABC transporter, permease protein, putative
2330	 69.37	0	2870991..2871692	-	233	83718017	-	BTH_II2345	-	ABC transporter, ATP-binding protein
2331	 67.63	0	2871692..2873140	-	482	83718128	-	BTH_II2346	-	monooxygenase flavin-binding family protein
2332	 72.12	+1	2873173..2877315	-	1380	83717534	-	BTH_II2347	-	cytochrome P450-related protein
2333	 71.28	0	2877312..2883725	-	2137	83716192	-	BTH_II2348	-	polyketide synthase, putative
2334	 65.74	0	2883827..2885443	-	538	83716857	-	BTH_II2349	-	acyl transferase domain-containing protein
2335	 70.43	0	2886029..2888662	+	877	83718007	-	BTH_II2350	-	hypothetical protein
2336	 70.29	0	2888664..2889629	+	321	83717052	-	BTH_II2351	-	lipoprotein VacJ
2337	 68.44	0	2889754..2890317	-	187	83717813	-	BTH_II2352	-	hypothetical protein
2338	 69.71	0	2890354..2891700	-	448	83718291	-	BTH_II2353	-	hypothetical protein
2339	 72.42	+1	2891697..2892686	-	329	83717206	-	BTH_II2354	-	hypothetical protein
2340	 65.02	0	2892780..2893508	-	242	83716664	glnQ	BTH_II2355	-	glutamine ABC transporter ATP-binding protein
2341	 64.21	0	2893505..2894197	-	230	83718147	glnP	BTH_II2356	-	glutamine ABC transporter permease protein
2342	 63.52	0	2894226..2894987	-	253	83717600	glnH	BTH_II2357	-	glutamine ABC transporter periplasmic protein
2343	 76.27	+1	2895429..2896136	-	235	83717788	-	BTH_II2358	-	hypothetical protein
2344	 69.40	0	2896143..2898116	-	657	83716953	shc	BTH_II2359	-	squalene-hopene cyclase
2345	 78.51	+2	2898146..2898508	-	120	83716140	-	BTH_II2360	-	hypothetical protein
2346	 68.09	0	2898483..2899676	-	397	83718303	-	BTH_II2361	-	phytoene synthase, putative
2347	 72.74	+1	2899868..2900773	+	301	83716578	-	BTH_II2362	-	esterase EstC
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.