IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2164	 73.36	+1	2675115..2675996	-	293	83716979	-	BTH_II2178	-	LysR family transcriptional regulator
2165	 73.53	+1	2676032..2677795	+	587	83717273	-	BTH_II2179	-	EmrB/QacA family drug resistance transporter
2166	 70.51	0	2677841..2679454	-	537	83717947	-	BTH_II2180	-	methyl-accepting chemotaxis protein
2167	 67.95	0	2679636..2681111	-	491	83717227	-	BTH_II2181	-	radical SAM domain-containing protein
2168	 65.99	0	2681173..2681763	-	196	83717924	-	BTH_II2182	-	hypothetical protein
2169	 67.45	0	2681816..2682454	-	212	83716493	-	BTH_II2183	-	hypothetical protein
2170	 60.10	-1	2682542..2682937	-	131	83717204	-	BTH_II2184	-	hypothetical protein
2171	 68.06	0	2683097..2683813	+	238	83717545	-	BTH_II2185	-	hypothetical protein
2172	 69.95	0	2683888..2685198	-	436	83716268	prpF	BTH_II2186	-	AcnD-accessory protein PrpF
2173	 68.90	0	2685232..2687826	-	864	83716822	acnD	BTH_II2187	-	aconitate hydratase
2174	 65.30	0	2687900..2689072	-	390	83717345	-	BTH_II2188	-	methylcitrate synthase
2175	 66.78	0	2689121..2690014	-	297	83716500	prpB	BTH_II2189	-	2-methylisocitrate lyase
2176	 72.46	+1	2690109..2692316	+	735	83717932	prpR	BTH_II2190	-	propionate catabolism operon regulatory protein PrpR
2177	 70.36	0	2692288..2694288	+	666	83716741	-	BTH_II2191	-	methyl-accepting chemotaxis protein
2178	 70.71	0	2694337..2694534	-	65	83716084	-	BTH_II2192	-	hypothetical protein
2179	 70.12	0	2694759..2696003	-	414	83717984	-	BTH_II2193	-	proline iminopeptidase
2180	 70.57	0	2696245..2697372	+	375	83717022	-	BTH_II2194	-	hypothetical protein
2181	 68.29	0	2697582..2698013	+	143	83716365	-	BTH_II2195	-	glyoxalase family protein
2182	 67.28	0	2698256..2699557	+	433	83718082	-	BTH_II2196	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
2183	 70.69	0	2699794..2700738	-	314	83717266	-	BTH_II2197	-	AraC family transcriptional regulator
2184	 63.75	0	2700841..2701149	+	102	83718364	-	BTH_II2198	-	membrane-associated protein
2185	 70.15	0	2701146..2701547	+	133	83716408	-	BTH_II2199	-	hypothetical protein
2186	 70.96	0	2701755..2702966	-	403	83717064	-	BTH_II2200	-	fumarylacetoacetate hydrolase family protein
2187	 67.93	0	2703054..2704001	+	315	83716731	-	BTH_II2201	-	IclR family transcriptional regulator
2188	 66.89	0	2704129..2704575	+	148	83716354	-	BTH_II2202	-	transposase, degenerate
2189	 63.68	0	2704870..2705070	+	66	83717309	-	BTH_II2203	-	transposase, degenerate
2190	 72.15	+1	2705250..2706653	+	467	83717410	-	BTH_II2204	-	indole acetimide hydrolase
2191	 63.95	0	2706767..2707318	+	183	83716041	-	BTH_II2205	-	hypothetical protein
2192	 68.86	0	2707737..2710247	-	836	83716704	-	BTH_II2206	-	acetyltransferase
2193	 59.11	-1	2711669..2711959	-	96	83717705	-	BTH_II2207	-	H-NS histone family protein
2194	 59.70	-1	2712417..2712890	-	157	83718360	-	BTH_II2208	-	hypothetical protein
2195	 64.36	0	2712838..2713314	+	158	83717257	-	BTH_II2209	-	hypothetical protein
2196	 69.56	0	2713278..2714765	-	495	83717957	-	BTH_II2210	-	sigma-54 dependent DNA-binding transcriptional regulator
2197	 66.95	0	2715131..2716534	+	467	83716729	-	BTH_II2211	-	hypothetical protein
2198	 63.30	0	2716806..2717132	+	108	83716370	-	BTH_II2212	-	hypothetical protein
2199	 70.09	0	2717287..2718279	+	330	83717374	-	BTH_II2213	-	dedA family protein
2200	 65.80	0	2718469..2719974	-	501	83717014	-	BTH_II2214	-	OprD family outer membrane porin
2201	 70.56	0	2720087..2721217	-	376	83716110	-	BTH_II2215	-	peptide ABC transporter, ATP-binding protein
2202	 67.27	0	2721214..2722203	-	329	83718057	-	BTH_II2216	-	oligopeptide ABC transporter, ATP-binding protein
2203	 69.66	0	2722205..2723107	-	300	83718115	-	BTH_II2217	-	oligopeptide ABC transporter, permease protein
2204	 67.09	0	2723120..2724058	-	312	83717739	-	BTH_II2218	-	oligopeptide ABC transporter, permease protein
2205	 63.94	0	2724072..2725724	-	550	83716534	-	BTH_II2219	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
2206	 61.60	-1	2725872..2726582	-	236	83717916	-	BTH_II2220	-	DNA-binding protein
2207	 67.15	0	2726936..2728591	+	551	83717230	-	BTH_II2221	-	amino acid/peptide transporter
2208	 71.57	0	2728704..2728907	+	67	83716036	-	BTH_II2222	-	hypothetical protein
2209	 63.80	0	2729847..2730788	-	313	83718058	-	BTH_II2223	-	LysR family transcriptional regulator
2210	 68.64	0	2731062..2732072	-	336	83717390	-	BTH_II2224	-	hypothetical protein
2211	 73.68	+1	2732065..2733576	-	503	83717055	-	BTH_II2225	-	MmgE/PrpD family protein
2212	 70.68	0	2733573..2734445	-	290	83717462	-	BTH_II2226	-	citrate lyase beta subunit
2213	 72.32	+1	2734442..2735680	-	412	83717966	-	BTH_II2227	-	CAIB/BAIF family protein
2214	 66.07	0	2735789..2736952	-	387	83716449	-	BTH_II2228	-	alcohol dehydrogenase BadC
2215	 66.84	0	2737011..2737598	-	195	83716950	-	BTH_II2229	-	isochorismatase family protein family
2216	 71.50	0	2737610..2739058	-	482	83718250	-	BTH_II2230	-	drug resistance transporter, EmrB/QacA family protein, putative
2217	 69.70	0	2739602..2741050	-	482	83716400	-	BTH_II2231	-	major facilitator family transporter
2218	 68.35	0	2741147..2742154	-	335	83717191	-	BTH_II2232	-	hypothetical protein
2219	 69.56	0	2742219..2743496	-	425	83717698	-	BTH_II2233	-	CAIB/BAIF family protein
2220	 70.40	0	2743559..2744308	-	249	83717295	-	BTH_II2234	-	IclR family transcriptional regulator
2221	 73.73	+1	2744531..2745436	+	301	83716208	-	BTH_II2235	-	citrate lyase, beta subunit
2222	 69.91	0	2745725..2746804	+	359	83716882	-	BTH_II2236	-	porin
2223	 70.42	0	2746848..2748311	+	487	83717754	-	BTH_II2237	-	MmgE/PrpD family protein
2224	 70.39	0	2748379..2749479	-	366	83718198	-	BTH_II2238	-	OpgC protein, putative
2225	 71.14	0	2749947..2750840	-	297	83716494	rarD	BTH_II2239	-	rarD protein
2226	 67.74	0	2750837..2751304	-	155	83717125	-	BTH_II2240	-	acylphosphatase
2227	 70.11	0	2751285..2752301	+	338	83717247	-	BTH_II2241	-	dihydroflavonol-4-reductase family protein
2228	 72.61	+1	2754016..2755209	-	397	83716209	-	BTH_II2242	-	glycosyl transferase, group 2 family protein
2229	 67.41	0	2755594..2756535	+	313	83717856	ispH	BTH_II2243	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
2230	 63.35	0	2756593..2757708	+	371	83717731	-	BTH_II2244	-	radical SAM domain-containing protein
2231	 67.23	0	2758257..2758610	+	117	83718370	-	BTH_II2245	-	hypothetical protein
2232	 60.29	-1	2758820..2759431	+	203	83716183	-	BTH_II2246	-	ISBm1, transposase orfB, degenerate
2233	 70.78	0	2759946..2760869	+	307	83716666	-	BTH_II2247	-	LysR family transcriptional regulator
2234	 73.47	+1	2761165..2761884	+	239	83717515	-	BTH_II2248	-	hypothetical protein
2235	 70.55	0	2761844..2763517	+	557	83718039	-	BTH_II2249	-	aminotransferase
2236	 65.10	0	2763827..2764273	+	148	83717080	-	BTH_II2250	-	hypothetical protein
2237	 67.15	0	2764443..2764649	-	68	83717024	-	BTH_II2251	-	hypothetical protein
2238	 67.00	0	2764662..2766740	-	692	83717530	cstA	BTH_II2252	-	carbon starvation protein A
2239	 69.59	0	2766999..2767511	-	170	83716569	-	BTH_II2253	-	cytochrome p460
2240	 69.16	0	2767529..2768572	-	347	83718293	-	BTH_II2254	-	epoxide hydrolase
2241	 70.66	0	2768751..2770328	-	525	83717814	-	BTH_II2255	-	MlrC C-terminus family protein
2242	 66.77	0	2770419..2771420	+	333	83716189	-	BTH_II2256	-	LysR family transcriptional regulator
2243	 65.13	0	2771396..2771590	-	64	83718261	-	BTH_II2257	-	glyoxalase family protein superfamily
2244	 70.80	0	2771722..2772108	-	128	83718218	-	BTH_II2258	-	GtrA-like protein family protein
2245	 70.41	0	2772105..2772851	-	248	83716590	-	BTH_II2259	-	Generic methyltransferase
2246	 67.42	0	2772879..2773940	-	353	83717999	-	BTH_II2260	-	bactoprenol glucosyl transferase
2247	 73.47	+1	2773925..2775349	-	474	83716297	-	BTH_II2261	-	hypothetical protein
2248	 69.96	0	2775346..2776590	-	414	83716743	-	BTH_II2262	-	hypothetical protein
2249	 55.56	-2	2777694..2777864	+	56	83717167	-	BTH_II2263	-	PilA-related protein
2250	 63.93	0	2777972..2778190	+	72	83717974	-	BTH_II2264	-	Flp/Fap pilin component superfamily protein
2251	 72.96	+1	2778282..2778821	+	179	83718194	-	BTH_II2265	-	peptidase, putative
2252	 70.35	0	2778863..2780245	+	460	83718049	-	BTH_II2266	-	ATPase with chaperone activity, putative
2253	 70.24	0	2780291..2781130	+	279	83717368	-	BTH_II2267	-	pilus assembly protein
2254	 74.07	+1	2781243..2783282	+	679	83716099	-	BTH_II2268	-	type II and III secretion system protein
2255	 69.28	0	2783304..2783609	+	101	83718384	-	BTH_II2269	-	hypothetical protein
2256	 67.14	0	2783635..2784891	+	418	83717579	-	BTH_II2270	-	hypothetical protein
2257	 66.67	0	2784915..2785457	+	180	83717072	-	BTH_II2271	-	hypothetical protein
2258	 68.40	0	2785454..2785915	+	153	83716499	-	BTH_II2272	-	hypothetical protein
2259	 70.55	0	2785938..2787146	+	402	83717074	cpaE	BTH_II2273	-	putative pilus assembly protein CpaE
2260	 67.25	0	2787168..2788535	+	455	83716156	-	BTH_II2274	-	type II secretion system protein
2261	 66.97	0	2788546..2789523	+	325	83716413	-	BTH_II2275	-	Flp pilus assembly protein TadB
2262	 69.92	0	2789647..2790537	+	296	83718164	-	BTH_II2276	-	hypothetical protein
2263	 55.88	-2	2790943..2791350	+	135	83718380	-	BTH_II2277	-	transposase, putative
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.