IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2093	 70.87	0	2590519..2591469	-	316	83718043	-	BTH_II2107	-	hypothetical protein
2094	 65.77	0	2591562..2592566	+	334	83716061	-	BTH_II2108	-	LysR family transcriptional regulator
2095	 55.88	-2	2592616..2593023	+	135	83717159	-	BTH_II2109	-	transposase, putative
2096	 58.53	-2	2592993..2593373	+	126	83716701	-	BTH_II2110	-	IS4 family transposase
2097	 74.83	+1	2594043..2594336	+	97	83717002	-	BTH_II2111	-	hypothetical protein
2098	 66.67	0	2594540..2595601	-	353	83718193	-	BTH_II2112	-	putative lipoprotein
2099	 75.39	+1	2595679..2596125	-	148	83716094	-	BTH_II2113	-	hypothetical protein
2100	 63.54	0	2596303..2596494	-	63	83716482	-	BTH_II2114	-	putative 4-oxalocrotonate tautomerase
2101	 70.63	0	2596595..2597503	+	302	83717422	-	BTH_II2115	-	LysR family transcriptional regulator
2102	 72.14	+1	2597687..2598856	-	389	83718102	selD	BTH_II2116	-	selenophosphate synthetase
2103	 72.58	+1	2598914..2599792	+	292	83716665	-	BTH_II2117	-	hypothetical protein
2104	 72.76	+1	2600064..2601752	-	562	83717504	-	BTH_II2118	-	GntR family transcriptional regulator
2105	 69.55	0	2601894..2603177	+	427	83718286	gabT	BTH_II2119	-	4-aminobutyrate aminotransferase
2106	 68.10	0	2603271..2604740	+	489	83716627	-	BTH_II2120	-	succinate-semialdehyde dehydrogenase
2107	 70.90	0	2606460..2607452	+	330	83718255	-	BTH_II2121	-	Rieske (2Fe-2S) domain-containing protein
2108	 64.10	0	2608034..2608189	+	51	83718287	-	BTH_II2122	-	hypothetical protein
2109	 62.35	-1	2608235..2608489	+	84	83716948	-	BTH_II2123	-	hypothetical protein
2110	 64.87	0	2608589..2609704	+	371	83716284	-	BTH_II2124	-	O-methyltransferase family protein
2111	 69.19	0	2609998..2611542	-	514	83717972	-	BTH_II2125	-	methyl-accepting chemotaxis protein
2112	 71.82	0	2612307..2613509	-	400	161723114	-	BTH_II2126	-	beta-ketoadipyl CoA thiolase
2113	 67.37	0	2613673..2614530	+	285	83716226	-	BTH_II2127	-	IclR family transcriptional regulator
2114	 72.09	+1	2614820..2615575	+	251	83716895	-	BTH_II2128	-	TetR family transcriptional regulator
2115	 69.80	0	2615855..2616301	-	148	83717245	-	BTH_II2129	-	major facilitator family transporter
2116	 71.38	0	2616216..2616788	+	190	83717228	-	BTH_II2130	-	LysR family transcriptional regulator
2117	 62.74	-1	2617010..2617798	+	262	83717417	-	BTH_II2131	-	amino acid ABC transporter, periplasmic amino acid-binding protein
2118	 68.55	0	2617985..2620267	-	760	83717571	-	BTH_II2132	-	O-antigen acetylase, putative
2119	 68.67	0	2620286..2621482	+	398	83717173	-	BTH_II2133	-	succinylglutamate desuccinylase/aspartoacylase family protein
2120	 64.09	0	2621744..2622637	-	297	83716401	-	BTH_II2134	-	D-methionine-binding lipoprotein metQ
2121	 64.70	0	2622737..2624005	+	422	83717961	-	BTH_II2135	-	porin
2122	 65.86	0	2624101..2624472	+	123	83716205	-	BTH_II2136	-	hypothetical protein
2123	 66.45	0	2624837..2625292	+	151	83716443	-	BTH_II2137	-	hypothetical protein
2124	 64.91	0	2625807..2626034	+	75	83718152	-	BTH_II2138	-	hypothetical protein
2125	 68.80	0	2626527..2628827	+	766	83717803	-	BTH_II2139	-	TonB-dependent heme/hemoglobin receptor family protein
2126	 69.64	0	2628827..2630035	+	402	83717128	-	BTH_II2140	-	hemin transport protein HmuS
2127	 74.54	+1	2630032..2630958	+	308	83717872	-	BTH_II2141	-	hemin ABC transporter, periplasmic hemin-binding protein
2128	 76.25	+1	2631089..2632309	+	406	83716313	-	BTH_II2142	-	hemin ABC transporter, permease protein
2129	 73.63	+1	2632470..2633288	+	272	83717874	-	BTH_II2143	-	hemin importer ATP-binding subunit
2130	 69.46	0	2633314..2633922	-	202	83716309	-	BTH_II2144	-	hypothetical protein
2131	 71.59	0	2633935..2636067	-	710	83716831	-	BTH_II2145	-	1A family penicillin-binding protein
2132	 71.91	0	2636250..2637221	+	323	83718200	-	BTH_II2146	-	chromosome replication initiation inhibitor protein
2133	 71.21	0	2637190..2638575	-	461	83717655	-	BTH_II2147	-	L-allo-threonine aldolase
2134	 65.16	0	2638558..2640219	+	553	83716617	-	BTH_II2148	-	ubiquinol oxidase family protein
2135	 66.37	0	2640255..2641262	+	335	83717283	cydB-2	BTH_II2149	-	cytochrome d ubiquinol oxidase, subunit II
2136	 66.08	0	2641234..2641404	+	56	83717822	-	BTH_II2150	-	hypothetical protein
2137	 63.59	0	2641622..2641816	-	64	83716691	-	BTH_II2151	-	hypothetical protein
2138	 71.51	0	2642188..2643303	-	371	83718257	-	BTH_II2152	-	oxidoreductase, FMN-binding
2139	 68.65	0	2643373..2644179	-	268	83716234	dkgB	BTH_II2153	-	2,5-diketo-D-gluconate reductase B
2140	 71.24	0	2644206..2645408	-	400	83717642	-	BTH_II2154	-	major facilitator family transporter
2141	 68.72	0	2645512..2646438	+	308	83716924	-	BTH_II2155	-	LysR family transcriptional regulator
2142	 69.14	0	2646485..2648179	-	564	83717902	-	BTH_II2156	-	squalene/phytoene synthase family protein
2143	 64.20	0	2648923..2649813	-	296	83717276	-	BTH_II2157	-	transcriptional regulator
2144	 65.37	0	2650194..2650808	+	204	83717170	-	BTH_II2158	-	NAD(P)H nitroreductase
2145	 66.14	0	2650757..2652091	+	444	83716549	-	BTH_II2159	-	hypothetical protein
2146	 65.60	0	2652134..2653261	+	375	83717998	-	BTH_II2160	-	LysR family transcriptional regulator
2147	 66.61	0	2653326..2655092	+	588	83717453	-	BTH_II2161	-	choline dehydrogenase
2148	 69.34	0	2655112..2656569	+	485	83717965	-	BTH_II2162	-	aldehyde dehydrogenase (NAD) family protein superfamily
2149	 64.43	0	2656665..2657558	+	297	83717434	-	BTH_II2163	-	amidohydrolase
2150	 63.64	0	2658071..2658334	+	87	83716642	-	BTH_II2164	-	hypothetical protein
2151	 68.93	0	2658347..2662495	-	1382	83716151	-	BTH_II2165	-	hypothetical protein
2152	 74.36	+1	2662434..2663888	-	484	83718322	-	BTH_II2166	-	putative lipoprotein
2153	 74.70	+1	2664332..2665588	-	418	83717801	-	BTH_II2167	-	hypothetical protein
2154	 74.59	+1	2665683..2668598	+	971	83716339	-	BTH_II2168	-	copper-translocating P-type ATPase
2155	 69.34	0	2668803..2669213	+	136	83717095	-	BTH_II2169	-	hypothetical protein
2156	 65.42	0	2669436..2669915	-	159	83716395	-	BTH_II2170	-	acetyltransferase
2157	 73.73	+1	2670167..2670520	+	117	83716765	-	BTH_II2171	-	hypothetical protein
2158	 62.82	-1	2670794..2670949	-	51	83716040	-	BTH_II2172	-	hypothetical protein
2159	 75.53	+1	2671147..2672985	-	612	83718078	-	BTH_II2174	-	hypothetical protein
2160	 74.07	+1	2671601..2671816	+	71	83717437	-	BTH_II2173	-	hypothetical protein
2161	 77.85	+2	2672416..2672898	+	160	83716417	-	BTH_II2175	-	hypothetical protein
2162	 69.40	0	2673016..2673711	-	231	83718259	-	BTH_II2176	-	MgtC family protein
2163	 72.25	+1	2673724..2674923	+	399	83717492	-	BTH_II2177	-	N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) superfamily protein
2164	 73.36	+1	2675115..2675996	-	293	83716979	-	BTH_II2178	-	LysR family transcriptional regulator
2165	 73.53	+1	2676032..2677795	+	587	83717273	-	BTH_II2179	-	EmrB/QacA family drug resistance transporter
2166	 70.51	0	2677841..2679454	-	537	83717947	-	BTH_II2180	-	methyl-accepting chemotaxis protein
2167	 67.95	0	2679636..2681111	-	491	83717227	-	BTH_II2181	-	radical SAM domain-containing protein
2168	 65.99	0	2681173..2681763	-	196	83717924	-	BTH_II2182	-	hypothetical protein
2169	 67.45	0	2681816..2682454	-	212	83716493	-	BTH_II2183	-	hypothetical protein
2170	 60.10	-1	2682542..2682937	-	131	83717204	-	BTH_II2184	-	hypothetical protein
2171	 68.06	0	2683097..2683813	+	238	83717545	-	BTH_II2185	-	hypothetical protein
2172	 69.95	0	2683888..2685198	-	436	83716268	prpF	BTH_II2186	-	AcnD-accessory protein PrpF
2173	 68.90	0	2685232..2687826	-	864	83716822	acnD	BTH_II2187	-	aconitate hydratase
2174	 65.30	0	2687900..2689072	-	390	83717345	-	BTH_II2188	-	methylcitrate synthase
2175	 66.78	0	2689121..2690014	-	297	83716500	prpB	BTH_II2189	-	2-methylisocitrate lyase
2176	 72.46	+1	2690109..2692316	+	735	83717932	prpR	BTH_II2190	-	propionate catabolism operon regulatory protein PrpR
2177	 70.36	0	2692288..2694288	+	666	83716741	-	BTH_II2191	-	methyl-accepting chemotaxis protein
2178	 70.71	0	2694337..2694534	-	65	83716084	-	BTH_II2192	-	hypothetical protein
2179	 70.12	0	2694759..2696003	-	414	83717984	-	BTH_II2193	-	proline iminopeptidase
2180	 70.57	0	2696245..2697372	+	375	83717022	-	BTH_II2194	-	hypothetical protein
2181	 68.29	0	2697582..2698013	+	143	83716365	-	BTH_II2195	-	glyoxalase family protein
2182	 67.28	0	2698256..2699557	+	433	83718082	-	BTH_II2196	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
2183	 70.69	0	2699794..2700738	-	314	83717266	-	BTH_II2197	-	AraC family transcriptional regulator
2184	 63.75	0	2700841..2701149	+	102	83718364	-	BTH_II2198	-	membrane-associated protein
2185	 70.15	0	2701146..2701547	+	133	83716408	-	BTH_II2199	-	hypothetical protein
2186	 70.96	0	2701755..2702966	-	403	83717064	-	BTH_II2200	-	fumarylacetoacetate hydrolase family protein
2187	 67.93	0	2703054..2704001	+	315	83716731	-	BTH_II2201	-	IclR family transcriptional regulator
2188	 66.89	0	2704129..2704575	+	148	83716354	-	BTH_II2202	-	transposase, degenerate
2189	 63.68	0	2704870..2705070	+	66	83717309	-	BTH_II2203	-	transposase, degenerate
2190	 72.15	+1	2705250..2706653	+	467	83717410	-	BTH_II2204	-	indole acetimide hydrolase
2191	 63.95	0	2706767..2707318	+	183	83716041	-	BTH_II2205	-	hypothetical protein
2192	 68.86	0	2707737..2710247	-	836	83716704	-	BTH_II2206	-	acetyltransferase
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.