IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2052	 74.25	+1	2517590..2518723	-	377	83716292	-	BTH_II2066	-	oxidoreductase, FAD-binding family protein
2053	 72.56	+1	2518720..2519652	-	310	83718189	-	BTH_II2067	-	proline racemase, putative
2054	 66.75	0	2519651..2520823	+	390	83717672	-	BTH_II2068	-	dihydrodipicolinate synthetase family protein
2055	 68.76	0	2521302..2522927	+	541	83717321	-	BTH_II2069	-	amino acid permease
2056	 74.58	+1	2523002..2524594	+	530	83716491	-	BTH_II2070	-	aldehyde dehydrogenase family protein
2057	 72.75	+1	2524587..2525621	+	344	83716318	-	BTH_II2071	-	malate/L-lactate dehydrogenase family protein
2058	 68.74	0	2525888..2527288	+	466	83716115	-	BTH_II2072	-	major facilitator family transporter
2059	 73.67	+1	2527311..2528996	+	561	83717938	-	BTH_II2073	-	drug resistance transporter, EmrB/QacA family protein
2060	 67.58	0	2529104..2529541	-	145	83717730	-	BTH_II2074	-	DoxD-like family protein
2061	 58.65	-2	2530743..2531054	-	103	83717679	-	BTH_II2075	-	hypothetical protein
2062	 69.11	0	2531437..2531559	-	40	83717214	-	BTH_II2076	-	hypothetical protein
2063	 69.11	0	2531579..2533300	-	573	83716397	-	BTH_II2077	-	lactate permease family protein
2064	 75.45	+1	2533610..2534338	-	242	83717357	-	BTH_II2078	-	hypothetical protein
2065	 69.50	0	2534335..2535783	-	482	83716547	-	BTH_II2079	-	iron-sulfur cluster binding protein
2066	 70.76	0	2535780..2536586	-	268	83716055	-	BTH_II2080	-	hypothetical protein
2067	 68.85	0	2536585..2537685	+	366	83717887	-	BTH_II2081	-	GntR family transcriptional regulator
2068	 71.38	0	2537974..2538801	+	275	83716761	-	BTH_II2082	-	hypothetical protein
2069	 72.80	+1	2538883..2540154	-	423	83717758	-	BTH_II2083	-	monoxygenase
2070	 75.09	+1	2540712..2540984	-	90	83718298	-	BTH_II2084	-	hypothetical protein
2071	 68.39	0	2541005..2542399	-	464	83716472	-	BTH_II2085	-	monoxygenase
2072	 63.70	0	2542420..2542992	-	190	83717011	-	BTH_II2086	-	D-methionine ABC transporter, periplasmic D-methionine-binding protein
2073	 67.61	0	2543245..2544522	-	425	83716463	-	BTH_II2087	-	ATP-dependent transcription regulator LuxR
2074	 73.91	+1	2545193..2553571	+	2792	83718314	-	BTH_II2088	-	thiotemplate mechanism natural product synthetase
2075	 66.86	0	2553671..2554189	+	172	83716692	-	BTH_II2089	-	hypothetical protein
2076	 71.90	0	2554346..2555740	+	464	83717350	-	BTH_II2090	-	syringomycin synthesis regulator SyrP, putative
2077	 70.25	0	2555749..2557170	+	473	83717738	-	BTH_II2091	-	hypothetical protein
2078	 72.05	+1	2557164..2558576	+	470	83717226	-	BTH_II2092	-	gamma-aminobutyraldehyde dehydrogenase
2079	 72.40	+1	2558633..2570779	+	4048	83717907	-	BTH_II2093	-	polyketide synthase, putative
2080	 70.34	0	2570785..2571846	+	353	83717037	ilvC-2	BTH_II2094	-	ketol-acid reductoisomerase
2081	 73.05	+1	2571743..2574466	+	907	83716834	-	BTH_II2095	-	diaminopimelate decarboxylase, putative
2082	 69.07	0	2574496..2576364	+	622	83716457	-	BTH_II2096	-	long-chain-fatty-acid--CoA ligase, putative
2083	 64.12	0	2576437..2576868	+	143	83716966	-	BTH_II2097	-	putative lipoprotein
2084	 70.78	0	2576869..2577768	+	299	83717685	fabD-2	BTH_II2098	-	malonyl CoA-acyl carrier protein transacylase
2085	 70.14	0	2577785..2579653	+	622	83718033	-	BTH_II2099	-	AMP-binding domain-containing protein
2086	 69.67	0	2580041..2580940	+	299	83718072	-	BTH_II2100	-	auxin efflux carrier, putative
2087	 66.67	0	2581139..2581624	-	161	83716098	-	BTH_II2101	-	acetyltransferase
2088	 61.52	-1	2581765..2582424	+	219	83716347	-	BTH_II2102	-	GntR family transcriptional regulator
2089	 66.51	0	2582408..2583649	+	413	83717139	-	BTH_II2103	-	sodium:dicarboxylate symporter family protein
2090	 70.65	0	2584453..2585985	-	510	83717404	-	BTH_II2104	-	RND efflux system outer membrane lipoprotein
2091	 66.45	0	2585996..2589181	-	1061	83718161	-	BTH_II2105	-	hydrophobe/amphiphile efflux family protein
2092	 70.99	0	2589243..2590469	-	408	83717393	-	BTH_II2106	-	RND family efflux transporter MFP subunit
2093	 70.87	0	2590519..2591469	-	316	83718043	-	BTH_II2107	-	hypothetical protein
2094	 65.77	0	2591562..2592566	+	334	83716061	-	BTH_II2108	-	LysR family transcriptional regulator
2095	 55.88	-2	2592616..2593023	+	135	83717159	-	BTH_II2109	-	transposase, putative
2096	 58.53	-2	2592993..2593373	+	126	83716701	-	BTH_II2110	-	IS4 family transposase
2097	 74.83	+1	2594043..2594336	+	97	83717002	-	BTH_II2111	-	hypothetical protein
2098	 66.67	0	2594540..2595601	-	353	83718193	-	BTH_II2112	-	putative lipoprotein
2099	 75.39	+1	2595679..2596125	-	148	83716094	-	BTH_II2113	-	hypothetical protein
2100	 63.54	0	2596303..2596494	-	63	83716482	-	BTH_II2114	-	putative 4-oxalocrotonate tautomerase
2101	 70.63	0	2596595..2597503	+	302	83717422	-	BTH_II2115	-	LysR family transcriptional regulator
2102	 72.14	+1	2597687..2598856	-	389	83718102	selD	BTH_II2116	-	selenophosphate synthetase
2103	 72.58	+1	2598914..2599792	+	292	83716665	-	BTH_II2117	-	hypothetical protein
2104	 72.76	+1	2600064..2601752	-	562	83717504	-	BTH_II2118	-	GntR family transcriptional regulator
2105	 69.55	0	2601894..2603177	+	427	83718286	gabT	BTH_II2119	-	4-aminobutyrate aminotransferase
2106	 68.10	0	2603271..2604740	+	489	83716627	-	BTH_II2120	-	succinate-semialdehyde dehydrogenase
2107	 70.90	0	2606460..2607452	+	330	83718255	-	BTH_II2121	-	Rieske (2Fe-2S) domain-containing protein
2108	 64.10	0	2608034..2608189	+	51	83718287	-	BTH_II2122	-	hypothetical protein
2109	 62.35	-1	2608235..2608489	+	84	83716948	-	BTH_II2123	-	hypothetical protein
2110	 64.87	0	2608589..2609704	+	371	83716284	-	BTH_II2124	-	O-methyltransferase family protein
2111	 69.19	0	2609998..2611542	-	514	83717972	-	BTH_II2125	-	methyl-accepting chemotaxis protein
2112	 71.82	0	2612307..2613509	-	400	161723114	-	BTH_II2126	-	beta-ketoadipyl CoA thiolase
2113	 67.37	0	2613673..2614530	+	285	83716226	-	BTH_II2127	-	IclR family transcriptional regulator
2114	 72.09	+1	2614820..2615575	+	251	83716895	-	BTH_II2128	-	TetR family transcriptional regulator
2115	 69.80	0	2615855..2616301	-	148	83717245	-	BTH_II2129	-	major facilitator family transporter
2116	 71.38	0	2616216..2616788	+	190	83717228	-	BTH_II2130	-	LysR family transcriptional regulator
2117	 62.74	-1	2617010..2617798	+	262	83717417	-	BTH_II2131	-	amino acid ABC transporter, periplasmic amino acid-binding protein
2118	 68.55	0	2617985..2620267	-	760	83717571	-	BTH_II2132	-	O-antigen acetylase, putative
2119	 68.67	0	2620286..2621482	+	398	83717173	-	BTH_II2133	-	succinylglutamate desuccinylase/aspartoacylase family protein
2120	 64.09	0	2621744..2622637	-	297	83716401	-	BTH_II2134	-	D-methionine-binding lipoprotein metQ
2121	 64.70	0	2622737..2624005	+	422	83717961	-	BTH_II2135	-	porin
2122	 65.86	0	2624101..2624472	+	123	83716205	-	BTH_II2136	-	hypothetical protein
2123	 66.45	0	2624837..2625292	+	151	83716443	-	BTH_II2137	-	hypothetical protein
2124	 64.91	0	2625807..2626034	+	75	83718152	-	BTH_II2138	-	hypothetical protein
2125	 68.80	0	2626527..2628827	+	766	83717803	-	BTH_II2139	-	TonB-dependent heme/hemoglobin receptor family protein
2126	 69.64	0	2628827..2630035	+	402	83717128	-	BTH_II2140	-	hemin transport protein HmuS
2127	 74.54	+1	2630032..2630958	+	308	83717872	-	BTH_II2141	-	hemin ABC transporter, periplasmic hemin-binding protein
2128	 76.25	+1	2631089..2632309	+	406	83716313	-	BTH_II2142	-	hemin ABC transporter, permease protein
2129	 73.63	+1	2632470..2633288	+	272	83717874	-	BTH_II2143	-	hemin importer ATP-binding subunit
2130	 69.46	0	2633314..2633922	-	202	83716309	-	BTH_II2144	-	hypothetical protein
2131	 71.59	0	2633935..2636067	-	710	83716831	-	BTH_II2145	-	1A family penicillin-binding protein
2132	 71.91	0	2636250..2637221	+	323	83718200	-	BTH_II2146	-	chromosome replication initiation inhibitor protein
2133	 71.21	0	2637190..2638575	-	461	83717655	-	BTH_II2147	-	L-allo-threonine aldolase
2134	 65.16	0	2638558..2640219	+	553	83716617	-	BTH_II2148	-	ubiquinol oxidase family protein
2135	 66.37	0	2640255..2641262	+	335	83717283	cydB-2	BTH_II2149	-	cytochrome d ubiquinol oxidase, subunit II
2136	 66.08	0	2641234..2641404	+	56	83717822	-	BTH_II2150	-	hypothetical protein
2137	 63.59	0	2641622..2641816	-	64	83716691	-	BTH_II2151	-	hypothetical protein
2138	 71.51	0	2642188..2643303	-	371	83718257	-	BTH_II2152	-	oxidoreductase, FMN-binding
2139	 68.65	0	2643373..2644179	-	268	83716234	dkgB	BTH_II2153	-	2,5-diketo-D-gluconate reductase B
2140	 71.24	0	2644206..2645408	-	400	83717642	-	BTH_II2154	-	major facilitator family transporter
2141	 68.72	0	2645512..2646438	+	308	83716924	-	BTH_II2155	-	LysR family transcriptional regulator
2142	 69.14	0	2646485..2648179	-	564	83717902	-	BTH_II2156	-	squalene/phytoene synthase family protein
2143	 64.20	0	2648923..2649813	-	296	83717276	-	BTH_II2157	-	transcriptional regulator
2144	 65.37	0	2650194..2650808	+	204	83717170	-	BTH_II2158	-	NAD(P)H nitroreductase
2145	 66.14	0	2650757..2652091	+	444	83716549	-	BTH_II2159	-	hypothetical protein
2146	 65.60	0	2652134..2653261	+	375	83717998	-	BTH_II2160	-	LysR family transcriptional regulator
2147	 66.61	0	2653326..2655092	+	588	83717453	-	BTH_II2161	-	choline dehydrogenase
2148	 69.34	0	2655112..2656569	+	485	83717965	-	BTH_II2162	-	aldehyde dehydrogenase (NAD) family protein superfamily
2149	 64.43	0	2656665..2657558	+	297	83717434	-	BTH_II2163	-	amidohydrolase
2150	 63.64	0	2658071..2658334	+	87	83716642	-	BTH_II2164	-	hypothetical protein
2151	 68.93	0	2658347..2662495	-	1382	83716151	-	BTH_II2165	-	hypothetical protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.