IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2011	 65.69	0	2468692..2470227	+	511	83717018	-	BTH_II2020	-	tartrate/fumarate family Fe-S type hydro-lyase
2012	 53.33	-2	2470185..2470859	+	224	83717287	-	BTH_II2021	-	bacterioferritin
2013	 71.97	0	2470905..2471771	+	288	83716465	murI	BTH_II2022	-	glutamate racemase
2014	 64.17	0	2471906..2472145	+	79	83718020	-	BTH_II2023	-	bacterioferritin-associated ferredoxin, putative
2015	 71.70	0	2472373..2473107	+	244	83716958	-	BTH_II2024	-	TonB protein, putative
2016	 64.53	0	2473168..2473869	+	233	83716181	-	BTH_II2025	-	MotA/TolQ/ExbB proton channel family protein
2017	 63.40	0	2473883..2474311	+	142	83716621	-	BTH_II2026	-	biopolymer ExbD/TolR family transporter
2018	 65.42	0	2474677..2475642	-	321	83718146	-	BTH_II2027	-	LysR family transcriptional regulator
2019	 64.69	0	2475625..2476638	+	337	83718085	-	BTH_II2028	-	pirin family protein
2020	 61.90	-1	2476697..2477242	+	181	83716459	-	BTH_II2029	-	hypothetical protein
2021	 65.54	0	2477386..2477652	+	88	83717134	-	BTH_II2030	-	hypothetical protein
2022	 67.88	0	2477949..2478359	-	136	83717909	-	BTH_II2031	-	glcG protein
2023	 66.24	0	2478419..2479819	-	466	83717092	-	BTH_II2032	-	hypothetical protein
2024	 66.07	0	2479816..2480658	-	280	83716902	-	BTH_II2033	-	FTR1 family iron permease
2025	 62.73	-1	2480718..2481047	-	109	83716087	-	BTH_II2034	-	hypothetical protein
2026	 63.59	0	2481107..2481658	-	183	83718227	-	BTH_II2035	-	antigen, putative
2027	 64.28	0	2481881..2483971	-	696	83717423	uvrB	BTH_II2036	-	excinuclease ABC subunit B
2028	 66.33	0	2484260..2485459	+	399	83717885	-	BTH_II2037	-	aromatic amino acid aminotransferase
2029	 65.15	0	2485665..2486453	-	262	83716677	-	BTH_II2038	-	3-hydroxybutyrate dehydrogenase
2030	 61.52	-1	2486641..2487612	+	323	83716170	-	BTH_II2039	-	aldo/keto reductase family oxidoreductase
2031	 57.92	-2	2487691..2488605	+	304	83718004	-	BTH_II2040	-	hypothetical protein
2032	 58.52	-2	2489453..2489857	-	134	83717479	cueR	BTH_II2041	-	Cu(I)-responsive transcriptional regulator
2033	 61.07	-1	2490052..2490426	-	124	83717602	-	BTH_II2042	-	TnpC protein
2034	 68.32	0	2496382..2496927	-	181	83717963	-	BTH_II2048	-	hypothetical protein
2035	 68.80	0	2496932..2498386	-	484	83716266	-	BTH_II2049	-	glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent
2036	 70.21	0	2498383..2499624	-	413	83716649	phnA-2	BTH_II2050	-	phosphonoacetate hydrolase
2037	 76.14	+1	2499722..2500576	-	284	83716753	-	BTH_II2051	-	ABC transporter, permease protein
2038	 72.05	+1	2500566..2501513	-	315	83717094	-	BTH_II2052	-	ABC transporter, permease protein
2039	 72.39	+1	2501491..2502504	-	337	83717012	-	BTH_II2053	-	ABC transporter, ATP-binding protein
2040	 65.65	0	2502649..2503731	-	360	83716448	-	BTH_II2054	-	ABC transporter, periplasmic substrate-binding protein
2041	 72.16	+1	2503970..2505079	+	369	83717456	phnW	BTH_II2055	-	2-aminoethylphosphonate--pyruvate transaminase
2042	 67.71	0	2505168..2506514	-	448	83716801	-	BTH_II2056	-	major facilitator superfamily transporter phthalate permease
2043	 72.63	+1	2506561..2507415	-	284	83716706	-	BTH_II2057	-	shikimate 5-dehydrogenase
2044	 64.95	0	2507412..2507993	-	193	83716203	-	BTH_II2058	-	3-dehydroquinate dehydratase
2045	 70.20	0	2508127..2510190	+	687	83718326	-	BTH_II2059	-	4-hydroxyphenylpyruvate dioxygenase, putative
2046	 68.30	0	2510258..2511907	-	549	83717222	-	BTH_II2060	-	L-lactate transporter
2047	 69.70	0	2511998..2514172	-	724	83717677	glcB	BTH_II2061	-	malate synthase G
2048	 66.30	0	2514623..2514892	+	89	83718219	-	BTH_II2062	-	hypothetical protein
2049	 68.70	0	2515096..2516031	-	311	83717821	-	BTH_II2063	-	AraC family transcriptional regulator
2050	 77.58	+2	2516071..2517408	-	445	83717149	-	BTH_II2064	-	oxidoreductase, putative
2051	 71.68	0	2517360..2517758	-	132	83716808	-	BTH_II2065	-	NAD-dependent formate dehydrogenase, alpha subunit
2052	 74.25	+1	2517590..2518723	-	377	83716292	-	BTH_II2066	-	oxidoreductase, FAD-binding family protein
2053	 72.56	+1	2518720..2519652	-	310	83718189	-	BTH_II2067	-	proline racemase, putative
2054	 66.75	0	2519651..2520823	+	390	83717672	-	BTH_II2068	-	dihydrodipicolinate synthetase family protein
2055	 68.76	0	2521302..2522927	+	541	83717321	-	BTH_II2069	-	amino acid permease
2056	 74.58	+1	2523002..2524594	+	530	83716491	-	BTH_II2070	-	aldehyde dehydrogenase family protein
2057	 72.75	+1	2524587..2525621	+	344	83716318	-	BTH_II2071	-	malate/L-lactate dehydrogenase family protein
2058	 68.74	0	2525888..2527288	+	466	83716115	-	BTH_II2072	-	major facilitator family transporter
2059	 73.67	+1	2527311..2528996	+	561	83717938	-	BTH_II2073	-	drug resistance transporter, EmrB/QacA family protein
2060	 67.58	0	2529104..2529541	-	145	83717730	-	BTH_II2074	-	DoxD-like family protein
2061	 58.65	-2	2530743..2531054	-	103	83717679	-	BTH_II2075	-	hypothetical protein
2062	 69.11	0	2531437..2531559	-	40	83717214	-	BTH_II2076	-	hypothetical protein
2063	 69.11	0	2531579..2533300	-	573	83716397	-	BTH_II2077	-	lactate permease family protein
2064	 75.45	+1	2533610..2534338	-	242	83717357	-	BTH_II2078	-	hypothetical protein
2065	 69.50	0	2534335..2535783	-	482	83716547	-	BTH_II2079	-	iron-sulfur cluster binding protein
2066	 70.76	0	2535780..2536586	-	268	83716055	-	BTH_II2080	-	hypothetical protein
2067	 68.85	0	2536585..2537685	+	366	83717887	-	BTH_II2081	-	GntR family transcriptional regulator
2068	 71.38	0	2537974..2538801	+	275	83716761	-	BTH_II2082	-	hypothetical protein
2069	 72.80	+1	2538883..2540154	-	423	83717758	-	BTH_II2083	-	monoxygenase
2070	 75.09	+1	2540712..2540984	-	90	83718298	-	BTH_II2084	-	hypothetical protein
2071	 68.39	0	2541005..2542399	-	464	83716472	-	BTH_II2085	-	monoxygenase
2072	 63.70	0	2542420..2542992	-	190	83717011	-	BTH_II2086	-	D-methionine ABC transporter, periplasmic D-methionine-binding protein
2073	 67.61	0	2543245..2544522	-	425	83716463	-	BTH_II2087	-	ATP-dependent transcription regulator LuxR
2074	 73.91	+1	2545193..2553571	+	2792	83718314	-	BTH_II2088	-	thiotemplate mechanism natural product synthetase
2075	 66.86	0	2553671..2554189	+	172	83716692	-	BTH_II2089	-	hypothetical protein
2076	 71.90	0	2554346..2555740	+	464	83717350	-	BTH_II2090	-	syringomycin synthesis regulator SyrP, putative
2077	 70.25	0	2555749..2557170	+	473	83717738	-	BTH_II2091	-	hypothetical protein
2078	 72.05	+1	2557164..2558576	+	470	83717226	-	BTH_II2092	-	gamma-aminobutyraldehyde dehydrogenase
2079	 72.40	+1	2558633..2570779	+	4048	83717907	-	BTH_II2093	-	polyketide synthase, putative
2080	 70.34	0	2570785..2571846	+	353	83717037	ilvC-2	BTH_II2094	-	ketol-acid reductoisomerase
2081	 73.05	+1	2571743..2574466	+	907	83716834	-	BTH_II2095	-	diaminopimelate decarboxylase, putative
2082	 69.07	0	2574496..2576364	+	622	83716457	-	BTH_II2096	-	long-chain-fatty-acid--CoA ligase, putative
2083	 64.12	0	2576437..2576868	+	143	83716966	-	BTH_II2097	-	putative lipoprotein
2084	 70.78	0	2576869..2577768	+	299	83717685	fabD-2	BTH_II2098	-	malonyl CoA-acyl carrier protein transacylase
2085	 70.14	0	2577785..2579653	+	622	83718033	-	BTH_II2099	-	AMP-binding domain-containing protein
2086	 69.67	0	2580041..2580940	+	299	83718072	-	BTH_II2100	-	auxin efflux carrier, putative
2087	 66.67	0	2581139..2581624	-	161	83716098	-	BTH_II2101	-	acetyltransferase
2088	 61.52	-1	2581765..2582424	+	219	83716347	-	BTH_II2102	-	GntR family transcriptional regulator
2089	 66.51	0	2582408..2583649	+	413	83717139	-	BTH_II2103	-	sodium:dicarboxylate symporter family protein
2090	 70.65	0	2584453..2585985	-	510	83717404	-	BTH_II2104	-	RND efflux system outer membrane lipoprotein
2091	 66.45	0	2585996..2589181	-	1061	83718161	-	BTH_II2105	-	hydrophobe/amphiphile efflux family protein
2092	 70.99	0	2589243..2590469	-	408	83717393	-	BTH_II2106	-	RND family efflux transporter MFP subunit
2093	 70.87	0	2590519..2591469	-	316	83718043	-	BTH_II2107	-	hypothetical protein
2094	 65.77	0	2591562..2592566	+	334	83716061	-	BTH_II2108	-	LysR family transcriptional regulator
2095	 55.88	-2	2592616..2593023	+	135	83717159	-	BTH_II2109	-	transposase, putative
2096	 58.53	-2	2592993..2593373	+	126	83716701	-	BTH_II2110	-	IS4 family transposase
2097	 74.83	+1	2594043..2594336	+	97	83717002	-	BTH_II2111	-	hypothetical protein
2098	 66.67	0	2594540..2595601	-	353	83718193	-	BTH_II2112	-	putative lipoprotein
2099	 75.39	+1	2595679..2596125	-	148	83716094	-	BTH_II2113	-	hypothetical protein
2100	 63.54	0	2596303..2596494	-	63	83716482	-	BTH_II2114	-	putative 4-oxalocrotonate tautomerase
2101	 70.63	0	2596595..2597503	+	302	83717422	-	BTH_II2115	-	LysR family transcriptional regulator
2102	 72.14	+1	2597687..2598856	-	389	83718102	selD	BTH_II2116	-	selenophosphate synthetase
2103	 72.58	+1	2598914..2599792	+	292	83716665	-	BTH_II2117	-	hypothetical protein
2104	 72.76	+1	2600064..2601752	-	562	83717504	-	BTH_II2118	-	GntR family transcriptional regulator
2105	 69.55	0	2601894..2603177	+	427	83718286	gabT	BTH_II2119	-	4-aminobutyrate aminotransferase
2106	 68.10	0	2603271..2604740	+	489	83716627	-	BTH_II2120	-	succinate-semialdehyde dehydrogenase
2107	 70.90	0	2606460..2607452	+	330	83718255	-	BTH_II2121	-	Rieske (2Fe-2S) domain-containing protein
2108	 64.10	0	2608034..2608189	+	51	83718287	-	BTH_II2122	-	hypothetical protein
2109	 62.35	-1	2608235..2608489	+	84	83716948	-	BTH_II2123	-	hypothetical protein
2110	 64.87	0	2608589..2609704	+	371	83716284	-	BTH_II2124	-	O-methyltransferase family protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.