IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1978	 67.35	0	2413868..2416501	-	877	83717486	-	BTH_II1986	-	polysaccharide biosynthesis protein, putative
1979	 66.92	0	2417537..2418319	+	260	83718006	-	BTH_II1987	-	hypothetical protein
1980	 67.11	0	2418390..2421308	+	972	83716206	o698	BTH_II1988	-	otnG protein
1981	 65.48	0	2421667..2423514	-	615	83716876	-	BTH_II1989	-	acetolactate synthase II, large subunit
1982	 57.35	-2	2423607..2424014	-	135	83716751	-	BTH_II1990	-	hypothetical protein
1983	 64.10	0	2424391..2424819	+	142	83716281	-	BTH_II1991	-	hypothetical protein
1984	 60.75	-1	2424935..2425627	+	230	83717401	-	BTH_II1992	-	hypothetical protein
1985	 64.76	0	2425760..2429323	+	1187	83716535	-	BTH_II1993	-	hypothetical protein
1986	 65.74	0	2429307..2441705	+	4132	83716175	-	BTH_II1994	-	LysM domain-containing protein
1987	 67.89	0	2441696..2442430	+	244	83716130	-	BTH_II1995	-	hypothetical protein
1988	 54.45	-2	2442483..2443055	+	190	83717581	-	BTH_II1996	-	bacteriophage integrase family protein
1989	 51.81	-2	2443674..2444171	+	165	83716698	-	BTH_II1997	-	hypothetical protein
1990	 54.68	-2	2444600..2445016	-	138	83717087	-	BTH_II1998	-	hypothetical protein
1991	 52.78	-2	2445060..2445239	-	59	83718197	-	BTH_II1999	-	hypothetical protein
1992	 64.20	0	2445519..2446046	+	175	83716506	-	BTH_II2000	-	hypothetical protein
1993	 60.41	-1	2446043..2446777	+	244	83717994	-	BTH_II2001	-	gp30
1994	 61.93	-1	2446910..2447902	+	330	83717469	-	BTH_II2002	-	gp31
1995	 57.25	-2	2447973..2448641	-	222	83716663	-	BTH_II2003	-	transposon Tn2501 resolvase
1996	 53.32	-2	2450618..2452303	-	561	83716069	-	BTH_II2004	-	adenylosuccinate synthase
1997	 58.45	-2	2453278..2454384	+	368	83718307	-	BTH_II2005	-	hypothetical protein
1998	 66.21	0	2454477..2454695	+	72	83716059	-	BTH_II2006	-	prophage regulatory protein AlpA family protein
1999	 71.98	0	2454942..2455148	+	68	83717796	-	BTH_II2007	-	splicing coactivator subunit-like protein
2000	 67.64	0	2455275..2458142	+	955	83717727	-	BTH_II2008	-	DNA primase
2001	 56.72	-2	2458273..2458473	-	66	83717192	-	BTH_II2009	-	DNA-binding protein
2002	 57.33	-2	2458778..2459077	+	99	83717865	-	BTH_II2010	-	H-NS histone family protein
2003	 57.43	-2	2459227..2459529	+	100	83717360	-	BTH_II2011	-	hypothetical protein
2004	 55.88	-2	2459661..2459864	-	67	83717317	-	BTH_II2012	-	DNA-binding protein
2005	 61.87	-1	2460611..2461840	-	409	83716799	-	BTH_II2013	-	integrase
2006	 65.82	0	2462155..2464170	-	671	83716273	-	BTH_II2015	-	sodium:solute symporter family protein
2007	 66.40	0	2464164..2464544	-	126	83718176	-	BTH_II2016	-	hypothetical protein
2008	 67.93	0	2464642..2466624	-	660	83717525	acsA	BTH_II2017	-	acetyl-CoA synthetase
2009	 67.00	0	2466914..2467813	+	299	83716871	-	BTH_II2018	-	hypothetical protein
2010	 64.68	0	2467948..2468652	+	234	83717639	-	BTH_II2019	-	hypothetical protein
2011	 65.69	0	2468692..2470227	+	511	83717018	-	BTH_II2020	-	tartrate/fumarate family Fe-S type hydro-lyase
2012	 53.33	-2	2470185..2470859	+	224	83717287	-	BTH_II2021	-	bacterioferritin
2013	 71.97	0	2470905..2471771	+	288	83716465	murI	BTH_II2022	-	glutamate racemase
2014	 64.17	0	2471906..2472145	+	79	83718020	-	BTH_II2023	-	bacterioferritin-associated ferredoxin, putative
2015	 71.70	0	2472373..2473107	+	244	83716958	-	BTH_II2024	-	TonB protein, putative
2016	 64.53	0	2473168..2473869	+	233	83716181	-	BTH_II2025	-	MotA/TolQ/ExbB proton channel family protein
2017	 63.40	0	2473883..2474311	+	142	83716621	-	BTH_II2026	-	biopolymer ExbD/TolR family transporter
2018	 65.42	0	2474677..2475642	-	321	83718146	-	BTH_II2027	-	LysR family transcriptional regulator
2019	 64.69	0	2475625..2476638	+	337	83718085	-	BTH_II2028	-	pirin family protein
2020	 61.90	-1	2476697..2477242	+	181	83716459	-	BTH_II2029	-	hypothetical protein
2021	 65.54	0	2477386..2477652	+	88	83717134	-	BTH_II2030	-	hypothetical protein
2022	 67.88	0	2477949..2478359	-	136	83717909	-	BTH_II2031	-	glcG protein
2023	 66.24	0	2478419..2479819	-	466	83717092	-	BTH_II2032	-	hypothetical protein
2024	 66.07	0	2479816..2480658	-	280	83716902	-	BTH_II2033	-	FTR1 family iron permease
2025	 62.73	-1	2480718..2481047	-	109	83716087	-	BTH_II2034	-	hypothetical protein
2026	 63.59	0	2481107..2481658	-	183	83718227	-	BTH_II2035	-	antigen, putative
2027	 64.28	0	2481881..2483971	-	696	83717423	uvrB	BTH_II2036	-	excinuclease ABC subunit B
2028	 66.33	0	2484260..2485459	+	399	83717885	-	BTH_II2037	-	aromatic amino acid aminotransferase
2029	 65.15	0	2485665..2486453	-	262	83716677	-	BTH_II2038	-	3-hydroxybutyrate dehydrogenase
2030	 61.52	-1	2486641..2487612	+	323	83716170	-	BTH_II2039	-	aldo/keto reductase family oxidoreductase
2031	 57.92	-2	2487691..2488605	+	304	83718004	-	BTH_II2040	-	hypothetical protein
2032	 58.52	-2	2489453..2489857	-	134	83717479	cueR	BTH_II2041	-	Cu(I)-responsive transcriptional regulator
2033	 61.07	-1	2490052..2490426	-	124	83717602	-	BTH_II2042	-	TnpC protein
2034	 68.32	0	2496382..2496927	-	181	83717963	-	BTH_II2048	-	hypothetical protein
2035	 68.80	0	2496932..2498386	-	484	83716266	-	BTH_II2049	-	glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent
2036	 70.21	0	2498383..2499624	-	413	83716649	phnA-2	BTH_II2050	-	phosphonoacetate hydrolase
2037	 76.14	+1	2499722..2500576	-	284	83716753	-	BTH_II2051	-	ABC transporter, permease protein
2038	 72.05	+1	2500566..2501513	-	315	83717094	-	BTH_II2052	-	ABC transporter, permease protein
2039	 72.39	+1	2501491..2502504	-	337	83717012	-	BTH_II2053	-	ABC transporter, ATP-binding protein
2040	 65.65	0	2502649..2503731	-	360	83716448	-	BTH_II2054	-	ABC transporter, periplasmic substrate-binding protein
2041	 72.16	+1	2503970..2505079	+	369	83717456	phnW	BTH_II2055	-	2-aminoethylphosphonate--pyruvate transaminase
2042	 67.71	0	2505168..2506514	-	448	83716801	-	BTH_II2056	-	major facilitator superfamily transporter phthalate permease
2043	 72.63	+1	2506561..2507415	-	284	83716706	-	BTH_II2057	-	shikimate 5-dehydrogenase
2044	 64.95	0	2507412..2507993	-	193	83716203	-	BTH_II2058	-	3-dehydroquinate dehydratase
2045	 70.20	0	2508127..2510190	+	687	83718326	-	BTH_II2059	-	4-hydroxyphenylpyruvate dioxygenase, putative
2046	 68.30	0	2510258..2511907	-	549	83717222	-	BTH_II2060	-	L-lactate transporter
2047	 69.70	0	2511998..2514172	-	724	83717677	glcB	BTH_II2061	-	malate synthase G
2048	 66.30	0	2514623..2514892	+	89	83718219	-	BTH_II2062	-	hypothetical protein
2049	 68.70	0	2515096..2516031	-	311	83717821	-	BTH_II2063	-	AraC family transcriptional regulator
2050	 77.58	+2	2516071..2517408	-	445	83717149	-	BTH_II2064	-	oxidoreductase, putative
2051	 71.68	0	2517360..2517758	-	132	83716808	-	BTH_II2065	-	NAD-dependent formate dehydrogenase, alpha subunit
2052	 74.25	+1	2517590..2518723	-	377	83716292	-	BTH_II2066	-	oxidoreductase, FAD-binding family protein
2053	 72.56	+1	2518720..2519652	-	310	83718189	-	BTH_II2067	-	proline racemase, putative
2054	 66.75	0	2519651..2520823	+	390	83717672	-	BTH_II2068	-	dihydrodipicolinate synthetase family protein
2055	 68.76	0	2521302..2522927	+	541	83717321	-	BTH_II2069	-	amino acid permease
2056	 74.58	+1	2523002..2524594	+	530	83716491	-	BTH_II2070	-	aldehyde dehydrogenase family protein
2057	 72.75	+1	2524587..2525621	+	344	83716318	-	BTH_II2071	-	malate/L-lactate dehydrogenase family protein
2058	 68.74	0	2525888..2527288	+	466	83716115	-	BTH_II2072	-	major facilitator family transporter
2059	 73.67	+1	2527311..2528996	+	561	83717938	-	BTH_II2073	-	drug resistance transporter, EmrB/QacA family protein
2060	 67.58	0	2529104..2529541	-	145	83717730	-	BTH_II2074	-	DoxD-like family protein
2061	 58.65	-2	2530743..2531054	-	103	83717679	-	BTH_II2075	-	hypothetical protein
2062	 69.11	0	2531437..2531559	-	40	83717214	-	BTH_II2076	-	hypothetical protein
2063	 69.11	0	2531579..2533300	-	573	83716397	-	BTH_II2077	-	lactate permease family protein
2064	 75.45	+1	2533610..2534338	-	242	83717357	-	BTH_II2078	-	hypothetical protein
2065	 69.50	0	2534335..2535783	-	482	83716547	-	BTH_II2079	-	iron-sulfur cluster binding protein
2066	 70.76	0	2535780..2536586	-	268	83716055	-	BTH_II2080	-	hypothetical protein
2067	 68.85	0	2536585..2537685	+	366	83717887	-	BTH_II2081	-	GntR family transcriptional regulator
2068	 71.38	0	2537974..2538801	+	275	83716761	-	BTH_II2082	-	hypothetical protein
2069	 72.80	+1	2538883..2540154	-	423	83717758	-	BTH_II2083	-	monoxygenase
2070	 75.09	+1	2540712..2540984	-	90	83718298	-	BTH_II2084	-	hypothetical protein
2071	 68.39	0	2541005..2542399	-	464	83716472	-	BTH_II2085	-	monoxygenase
2072	 63.70	0	2542420..2542992	-	190	83717011	-	BTH_II2086	-	D-methionine ABC transporter, periplasmic D-methionine-binding protein
2073	 67.61	0	2543245..2544522	-	425	83716463	-	BTH_II2087	-	ATP-dependent transcription regulator LuxR
2074	 73.91	+1	2545193..2553571	+	2792	83718314	-	BTH_II2088	-	thiotemplate mechanism natural product synthetase
2075	 66.86	0	2553671..2554189	+	172	83716692	-	BTH_II2089	-	hypothetical protein
2076	 71.90	0	2554346..2555740	+	464	83717350	-	BTH_II2090	-	syringomycin synthesis regulator SyrP, putative
2077	 70.25	0	2555749..2557170	+	473	83717738	-	BTH_II2091	-	hypothetical protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.