IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.58   STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1926	 72.34	+1	2353157..2354038	-	293	83716903	-	BTH_II1934	-	hypothetical protein
1927	 69.74	0	2354118..2355743	-	541	83716442	-	BTH_II1935	-	acetyl-CoA synthetase, putative
1928	 67.88	0	2356823..2359468	-	881	83717926	-	BTH_II1936	-	ribonucleotide reductase system
1929	 64.16	0	2359857..2360414	+	185	83717249	-	BTH_II1937	-	hypothetical protein
1930	 67.09	0	2360812..2362452	-	546	83716843	groEL	BTH_II1938	-	chaperonin GroEL
1931	 64.60	0	2362465..2362755	-	96	83716291	groES	BTH_II1939	-	co-chaperonin GroES
1932	 64.73	0	2362917..2363330	-	137	83717828	-	BTH_II1940	-	hypothetical protein
1933	 66.98	0	2363388..2364350	-	320	83717304	-	BTH_II1941	-	agmatinase
1934	 68.08	0	2364482..2365972	-	496	83717700	-	BTH_II1942	-	aldehyde dehydrogenase family protein
1935	 62.63	-1	2366090..2366659	-	189	83717911	-	BTH_II1943	-	Cro/CI family transcriptional regulator putative
1936	 62.21	-1	2366923..2367348	-	141	83718288	-	BTH_II1944	-	hypothetical protein
1937	 69.00	0	2367439..2368380	+	313	83717081	-	BTH_II1945	-	glutamine amidotransferase, class I
1938	 63.60	0	2368407..2369741	+	444	83716572	-	BTH_II1946	-	glutamine synthetase family protein
1939	 66.60	0	2369777..2371210	+	477	83717599	-	BTH_II1947	-	putative aminotransferase
1940	 62.92	-1	2371278..2372399	+	373	83718182	-	BTH_II1948	-	putrescine ABC transporter, periplasmic putrescine-binding protein
1941	 64.59	0	2372590..2373744	+	384	83718054	-	BTH_II1949	-	putrescine ABC transporter, ATP-binding protein
1942	 64.93	0	2373741..2374721	+	326	83716200	-	BTH_II1950	-	putrescine ABC transporter, permease protein
1943	 65.05	0	2374718..2375647	+	309	83716719	-	BTH_II1951	-	putrescine ABC transporter, permease protein
1944	 65.97	0	2375713..2377293	+	526	83717238	-	BTH_II1952	-	hypothetical protein
1945	 71.70	0	2377398..2378729	+	443	83718209	-	BTH_II1953	-	oxidoreductase, FAD-binding
1946	 69.45	0	2378797..2380089	+	430	83717016	-	BTH_II1954	-	oxidoreductase, FAD-binding
1947	 65.99	0	2380267..2382324	-	685	83717565	-	BTH_II1955	-	methyl-accepting chemotaxis protein
1948	 70.68	0	2382350..2383297	-	315	83718099	-	BTH_II1956	-	copper resistance protein, putative
1949	 67.80	0	2383297..2383737	-	146	83716127	-	BTH_II1957	-	copper resistance protein, putative
1950	 62.64	-1	2383734..2384081	-	115	83716689	-	BTH_II1958	-	RND family efflux transporter MFP subunit
1951	 66.28	0	2384177..2385478	-	433	83717420	-	BTH_II1959	-	multicopper oxidase
1952	 70.39	0	2385475..2387085	-	536	83717855	-	BTH_II1960	-	copper tolerance protein
1953	 73.67	+1	2387082..2387381	-	99	83716136	-	BTH_II1961	-	hypothetical protein
1954	 68.48	0	2387475..2388137	-	220	83716435	-	BTH_II1962	-	hypothetical protein
1955	 69.00	0	2388143..2389987	-	614	83716502	-	BTH_II1963	-	phosphotransferase domain-containing protein
1956	 63.90	0	2391056..2392177	+	373	83717156	-	BTH_II1964	-	D-alanyl-D-alanine carboxypeptidase family protein
1957	 76.39	+1	2392177..2392320	+	47	83716823	-	BTH_II1965	-	hypothetical protein
1958	 68.44	0	2392490..2393110	-	206	83717328	-	BTH_II1966	-	DJ-1/PfpI family protein, putative
1959	 73.56	+1	2393196..2394530	+	444	83717880	-	BTH_II1967	-	aminotransferase family protein
1960	 73.29	+1	2394909..2395814	-	301	83716614	-	BTH_II1968	-	hypothetical protein
1961	 66.12	0	2395890..2396615	-	241	83717131	-	BTH_II1969	-	hypothetical protein
1962	 65.75	0	2396445..2397644	+	399	83717647	-	BTH_II1970	-	LysR family transcriptional regulator
1963	 68.52	0	2397731..2397946	+	71	83718184	-	BTH_II1971	-	hypothetical protein
1964	 56.91	-2	2398500..2398622	+	40	83716307	-	BTH_II1972	-	hypothetical protein
1965	 65.72	0	2398681..2399634	+	317	83716846	-	BTH_II1973	-	hypothetical protein
1966	 60.95	-1	2399895..2400944	-	349	83717300	-	BTH_II1974	-	hypothetical protein
1967	 66.00	0	2400948..2401994	-	348	83717263	-	BTH_II1975	-	hypothetical protein
1968	 67.02	0	2402007..2402576	-	189	83716440	-	BTH_II1976	-	galactoside O-acetyltransferase
1969	 62.93	-1	2402569..2403666	-	365	83716955	-	BTH_II1977	-	lipopolysaccharide core biosynthesis heptosyltransferase, putative
1970	 59.97	-1	2403530..2404738	-	402	83716375	-	BTH_II1978	-	lipopolysaccharide heptosyltransferase II rfaC2
1971	 64.18	0	2404962..2406005	-	347	83716957	-	BTH_II1979	-	glycosyl transferase family protein
1972	 65.41	0	2406021..2407376	-	451	83718256	-	BTH_II1980	-	hypothetical protein
1973	 65.88	0	2407655..2409430	-	591	83718011	-	BTH_II1981	-	perosamine synthetase
1974	 66.22	0	2409441..2410793	-	450	83716159	rfbH	BTH_II1982	-	lipopolysaccharide biosynthesis protein (O-antigen-related)
1975	 69.74	0	2410797..2411870	-	357	83716161	rfbG	BTH_II1983	-	CDP-glucose 4,6-dehydratase (O-antigen-related)
1976	 62.16	-1	2411873..2412649	-	258	83717121	rfbF	BTH_II1984	-	glucose-1-phosphate cytidylyltransferase (O-antigen-related)
1977	 67.49	0	2412646..2413863	-	405	83718074	-	BTH_II1985	-	chain length determinant domain-containing protein
1978	 67.35	0	2413868..2416501	-	877	83717486	-	BTH_II1986	-	polysaccharide biosynthesis protein, putative
1979	 66.92	0	2417537..2418319	+	260	83718006	-	BTH_II1987	-	hypothetical protein
1980	 67.11	0	2418390..2421308	+	972	83716206	o698	BTH_II1988	-	otnG protein
1981	 65.48	0	2421667..2423514	-	615	83716876	-	BTH_II1989	-	acetolactate synthase II, large subunit
1982	 57.35	-2	2423607..2424014	-	135	83716751	-	BTH_II1990	-	hypothetical protein
1983	 64.10	0	2424391..2424819	+	142	83716281	-	BTH_II1991	-	hypothetical protein
1984	 60.75	-1	2424935..2425627	+	230	83717401	-	BTH_II1992	-	hypothetical protein
1985	 64.76	0	2425760..2429323	+	1187	83716535	-	BTH_II1993	-	hypothetical protein
1986	 65.74	0	2429307..2441705	+	4132	83716175	-	BTH_II1994	-	LysM domain-containing protein
1987	 67.89	0	2441696..2442430	+	244	83716130	-	BTH_II1995	-	hypothetical protein
1988	 54.45	-2	2442483..2443055	+	190	83717581	-	BTH_II1996	-	bacteriophage integrase family protein
1989	 51.81	-2	2443674..2444171	+	165	83716698	-	BTH_II1997	-	hypothetical protein
1990	 54.68	-2	2444600..2445016	-	138	83717087	-	BTH_II1998	-	hypothetical protein
1991	 52.78	-2	2445060..2445239	-	59	83718197	-	BTH_II1999	-	hypothetical protein
1992	 64.20	0	2445519..2446046	+	175	83716506	-	BTH_II2000	-	hypothetical protein
1993	 60.41	-1	2446043..2446777	+	244	83717994	-	BTH_II2001	-	gp30
1994	 61.93	-1	2446910..2447902	+	330	83717469	-	BTH_II2002	-	gp31
1995	 57.25	-2	2447973..2448641	-	222	83716663	-	BTH_II2003	-	transposon Tn2501 resolvase
1996	 53.32	-2	2450618..2452303	-	561	83716069	-	BTH_II2004	-	adenylosuccinate synthase
1997	 58.45	-2	2453278..2454384	+	368	83718307	-	BTH_II2005	-	hypothetical protein
1998	 66.21	0	2454477..2454695	+	72	83716059	-	BTH_II2006	-	prophage regulatory protein AlpA family protein
1999	 71.98	0	2454942..2455148	+	68	83717796	-	BTH_II2007	-	splicing coactivator subunit-like protein
2000	 67.64	0	2455275..2458142	+	955	83717727	-	BTH_II2008	-	DNA primase
2001	 56.72	-2	2458273..2458473	-	66	83717192	-	BTH_II2009	-	DNA-binding protein
2002	 57.33	-2	2458778..2459077	+	99	83717865	-	BTH_II2010	-	H-NS histone family protein
2003	 57.43	-2	2459227..2459529	+	100	83717360	-	BTH_II2011	-	hypothetical protein
2004	 55.88	-2	2459661..2459864	-	67	83717317	-	BTH_II2012	-	DNA-binding protein
2005	 61.87	-1	2460611..2461840	-	409	83716799	-	BTH_II2013	-	integrase
2006	 65.82	0	2462155..2464170	-	671	83716273	-	BTH_II2015	-	sodium:solute symporter family protein
2007	 66.40	0	2464164..2464544	-	126	83718176	-	BTH_II2016	-	hypothetical protein
2008	 67.93	0	2464642..2466624	-	660	83717525	acsA	BTH_II2017	-	acetyl-CoA synthetase
2009	 67.00	0	2466914..2467813	+	299	83716871	-	BTH_II2018	-	hypothetical protein
2010	 64.68	0	2467948..2468652	+	234	83717639	-	BTH_II2019	-	hypothetical protein
2011	 65.69	0	2468692..2470227	+	511	83717018	-	BTH_II2020	-	tartrate/fumarate family Fe-S type hydro-lyase
2012	 53.33	-2	2470185..2470859	+	224	83717287	-	BTH_II2021	-	bacterioferritin
2013	 71.97	0	2470905..2471771	+	288	83716465	murI	BTH_II2022	-	glutamate racemase
2014	 64.17	0	2471906..2472145	+	79	83718020	-	BTH_II2023	-	bacterioferritin-associated ferredoxin, putative
2015	 71.70	0	2472373..2473107	+	244	83716958	-	BTH_II2024	-	TonB protein, putative
2016	 64.53	0	2473168..2473869	+	233	83716181	-	BTH_II2025	-	MotA/TolQ/ExbB proton channel family protein
2017	 63.40	0	2473883..2474311	+	142	83716621	-	BTH_II2026	-	biopolymer ExbD/TolR family transporter
2018	 65.42	0	2474677..2475642	-	321	83718146	-	BTH_II2027	-	LysR family transcriptional regulator
2019	 64.69	0	2475625..2476638	+	337	83718085	-	BTH_II2028	-	pirin family protein
2020	 61.90	-1	2476697..2477242	+	181	83716459	-	BTH_II2029	-	hypothetical protein
2021	 65.54	0	2477386..2477652	+	88	83717134	-	BTH_II2030	-	hypothetical protein
2022	 67.88	0	2477949..2478359	-	136	83717909	-	BTH_II2031	-	glcG protein
2023	 66.24	0	2478419..2479819	-	466	83717092	-	BTH_II2032	-	hypothetical protein
2024	 66.07	0	2479816..2480658	-	280	83716902	-	BTH_II2033	-	FTR1 family iron permease
2025	 62.73	-1	2480718..2481047	-	109	83716087	-	BTH_II2034	-	hypothetical protein
67.58	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.