IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
145	 63.93	0	179572..181395	+	607	83716112	-	BTH_II0145	-	glycosyl transferase group 2 family protein
146	 60.47	-1	181392..182327	+	311	83716750	-	BTH_II0146	-	hypothetical protein
147	 60.58	-1	182320..183108	+	262	83717240	-	BTH_II0147	-	hypothetical protein
148	 57.80	-2	183105..183713	+	202	83718026	-	BTH_II0148	-	HAD family hydrolase
149	 58.94	-1	183689..184348	+	219	83716512	-	BTH_II0149	-	hypothetical protein
150	 60.26	-1	184329..185483	+	384	83716668	-	BTH_II0150	-	hypothetical protein
151	 63.86	0	185596..186486	+	296	83717540	-	BTH_II0151	-	flagellin D
152	 71.19	0	186543..186719	-	58	83718295	-	BTH_II0152	-	hypothetical protein
153	 62.09	-1	186899..187750	+	283	83717992	-	BTH_II0153	-	flagellar motor protein MotA
154	 67.95	0	187769..188704	+	311	83717140	-	BTH_II0154	-	chemotaxis lafU protein
155	 61.71	-1	188721..189083	+	120	83717918	-	BTH_II0155	-	chemotaxis response regulator
156	 66.76	0	189128..191371	+	747	83716091	-	BTH_II0156	-	chemotaxis protein CheA
157	 63.92	0	191381..191854	+	157	83717542	-	BTH_II0157	-	chemotaxis protein CheW
158	 66.41	0	191935..194274	+	779	83717148	-	BTH_II0158	-	chemotaxis protein
159	 63.63	0	194385..195206	+	273	83716910	-	BTH_II0159	-	chemotaxis protein methyltransferase CheR
160	 66.67	0	195211..195798	+	195	83716255	-	BTH_II0160	-	chemotaxis protein CheD
161	 69.78	0	195743..196930	+	395	83717224	-	BTH_II0161	-	protein-glutamate methylesterase CheB
162	 65.65	0	196955..198037	+	360	83716866	-	BTH_II0162	-	protein-glutamate methylesterase CheB
163	 66.43	0	198126..200216	-	696	83716612	-	BTH_II0163	-	flagellar biosynthesis protein FlhA
164	 67.02	0	200213..201352	-	379	83716504	flhB	BTH_II0164	-	flagellar biosynthesis protein FlhB
165	 66.54	0	201345..202121	-	258	83718195	-	BTH_II0165	-	flagellar biosynthetic protein FliR, putative
166	 65.93	0	202126..202398	-	90	83717562	-	BTH_II0166	-	flagellar biosynthetic protein FliQ, putative
167	 66.15	0	202398..203165	-	255	83716894	fliP	BTH_II0167	-	flagellar biosynthesis protein FliP
168	 63.79	0	203162..203509	-	115	83716202	-	BTH_II0168	-	flagellar motor switch protein FliN
169	 70.73	0	203513..204472	-	319	83717892	-	BTH_II0169	-	hypothetical protein
170	 64.26	0	205230..205562	+	110	83716521	fliE-2	BTH_II0170	-	flagellar hook-basal body complex protein FliE
171	 68.06	0	205598..207253	+	551	83718135	fliF	BTH_II0171	-	flagellar MS-ring protein
172	 65.98	0	207234..208247	+	337	83717505	fliG	BTH_II0172	-	flagellar motor switch protein G
173	 69.28	0	208244..208969	+	241	83717320	fliH	BTH_II0173	-	flagellar assembly protein H
174	 70.03	0	208966..210273	+	435	83716747	fliI	BTH_II0174	-	flagellum-specific ATP synthase
175	 73.29	+1	210270..210707	+	145	83716277	-	BTH_II0175	-	hypothetical protein
176	 61.96	-1	210784..212100	+	438	83717962	-	BTH_II0176	-	flagellar hook-associated protein, putative
177	 64.08	0	212134..212520	+	128	83718213	fliS-2	BTH_II0177	-	flagellar protein FliS
178	 72.42	+1	212507..212836	+	109	83717532	-	BTH_II0178	-	hypothetical protein
179	 72.34	+1	212833..213978	+	381	83717155	-	BTH_II0179	-	flagellar hook-length control protein, putative
180	 64.77	0	214074..215183	+	369	83716542	-	BTH_II0180	-	RNA polymerase sigma factor for flagellar operon FliA
181	 68.42	0	215232..215516	+	94	83717908	-	BTH_II0181	-	hypothetical protein
182	 72.08	+1	215925..216719	+	264	83717866	-	BTH_II0182	-	flagellar protein FlgJ
183	 70.80	0	216661..217434	-	257	83717277	-	BTH_II0183	-	flagella basal body P-ring formation protein FlgA
184	 63.73	0	217553..217927	+	124	83716884	flgB-2	BTH_II0184	-	flagellar basal-body rod protein FlgB
185	 64.75	0	217964..218380	+	138	83716764	flgC-2	BTH_II0185	-	flagellar basal-body rod protein FlgC
186	 63.79	0	218407..219102	+	231	83716169	flgD	BTH_II0186	-	flagellar basal body rod modification protein
187	 66.08	0	219099..220286	+	395	83718065	flgE	BTH_II0187	-	flagellar hook protein flgE
188	 68.46	0	220290..221015	+	241	83717394	-	BTH_II0188	-	flagellar basal-body rod protein FlgF
189	 63.24	0	221047..221835	+	262	83716996	flgG	BTH_II0189	-	flagellar basal body rod protein FlgG
190	 65.75	0	221835..222488	+	217	83716377	flgH	BTH_II0190	-	flagellar basal body L-ring protein
191	 68.13	0	222488..223651	+	387	83718393	flgI	BTH_II0191	-	flagellar basal body P-ring protein
192	 72.95	+1	223665..224030	+	121	83717917	-	BTH_II0192	-	peptidoglycan hydrolase
193	 65.12	0	224165..225523	+	452	83716869	flgK	BTH_II0193	-	flagellar hook-associated protein FlgK
194	 62.95	-1	225541..226455	+	304	83716911	flgL	BTH_II0194	-	flagellar hook-associated protein FlgL
195	 72.10	+1	226471..227538	+	355	83717252	-	BTH_II0195	-	hypothetical protein
196	 66.92	0	227653..228054	+	133	83716355	-	BTH_II0196	-	hypothetical protein
197	 63.28	0	228094..228861	-	255	83716239	-	BTH_II0197	-	transcriptional regulator, putative
198	 57.72	-2	231062..231754	+	230	83717719	-	BTH_II0198	-	DNA-binding response regulator
199	 58.50	-2	231957..232250	-	97	83718376	-	BTH_II0199	-	H-NS histone family protein
200	 68.48	0	232965..234290	+	441	83716102	-	BTH_II0200	-	major facilitator family transporter
201	 75.61	+1	234365..235549	+	394	83716231	-	BTH_II0201	-	glycerate kinase
202	 70.72	0	235608..237062	+	484	83718223	pyk-2	BTH_II0202	-	pyruvate kinase
203	 71.55	0	237154..238362	+	402	83717559	-	BTH_II0203	-	carbohydrate diacid regulator
204	 68.16	0	239300..242251	+	983	83716490	-	BTH_II0204	-	peptide synthetase, putative
205	 69.43	0	242291..243268	+	325	83717292	-	BTH_II0205	-	hypothetical protein
206	 68.43	0	243292..243687	+	131	83717817	-	BTH_II0206	-	hypothetical protein
207	 68.13	0	243841..244866	+	341	83716646	-	BTH_II0207	-	hypothetical protein
208	 68.68	0	244934..246322	-	462	83716280	-	BTH_II0208	-	GGDEF domain-containing protein
209	 65.08	0	247314..248258	-	314	83718224	-	BTH_II0209	-	ribose ABC transporter, periplasmic ribose-binding protein
210	 69.90	0	248338..249357	-	339	83717568	-	BTH_II0210	-	ribose ABC transporter, permease protein
211	 69.82	0	249412..250965	-	517	83717329	-	BTH_II0211	-	ribose ABC transporter, ATP-binding protein
212	 71.54	0	250952..252202	-	416	83716917	-	BTH_II0212	-	transcription regulator ROK family protein
213	 67.08	0	253045..255690	-	881	83717267	-	BTH_II0213	-	glucan 1,4- a-glucosidase
214	 68.88	0	256014..257411	-	465	161723115	-	BTH_II0214	-	ATP-dependent RNA helicase DbpA
215	 64.58	0	257620..258768	-	382	83716388	-	BTH_II0215	-	outer membrane porin OpcP
216	 70.85	0	259034..260347	-	437	83717150	-	BTH_II0216	-	major facilitator family transporter
217	 70.19	0	260388..261578	-	396	83717682	-	BTH_II0217	-	hippurate hydolase
218	 68.77	0	261762..262664	+	300	83716129	-	BTH_II0218	-	LysR family transcriptional regulator
219	 74.19	+1	262935..263771	-	278	83716638	-	BTH_II0219	-	hypothetical protein
220	 68.88	0	263907..265079	+	390	83716134	-	BTH_II0220	-	fatty acid desaturase domain-containing protein
221	 71.78	0	265156..265977	+	273	83716856	-	BTH_II0221	-	hypothetical protein
222	 62.67	-1	266516..267415	-	299	83717385	-	BTH_II0222	-	glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein
223	 71.67	0	267561..268898	-	445	83717946	-	BTH_II0223	-	D-amino acid dehydrogenase, small subunit
224	 72.04	+1	268931..269860	-	309	83717418	-	BTH_II0224	-	LysR family transcriptional regulator
225	 71.15	0	269956..270891	-	311	83718093	-	BTH_II0225	-	short chain dehydrogenase
226	 62.84	-1	271109..271474	+	121	83716349	-	BTH_II0226	-	hypothetical protein
227	 65.96	0	271634..273769	+	711	83717737	-	BTH_II0227	-	hypothetical protein
228	 67.98	0	274067..276961	+	964	83718372	-	BTH_II0228	-	alpha-1,2-mannosidase family protein
229	 66.01	0	277580..278641	+	353	83716637	-	BTH_II0229	-	pyoverdine chromophore biosynthetic protein PvcA
230	 68.31	0	278638..279549	+	303	83718140	pvcB	BTH_II0230	-	pyoverdine biosynthesis protein PvcB
231	 66.73	0	279575..281080	+	501	83717205	-	BTH_II0231	-	pyoverdin chromophore biosynthetic protein PvcC
232	 69.18	0	281105..282973	+	622	83718070	asnB-1	BTH_II0232	-	asparagine synthase (glutamine-hydrolyzing)
233	 70.47	0	283002..283973	+	323	83717308	-	BTH_II0233	-	quinone oxidoreductase
234	 68.34	0	283921..284937	+	338	83718071	-	BTH_II0234	-	class III extradiol-type catecholic dioxygenase, putative
235	 64.91	0	284996..286360	-	454	83717382	-	BTH_II0235	-	LysR family transcriptional regulator
236	 65.23	0	287110..287526	+	138	83717038	-	BTH_II0236	-	hypothetical protein
237	 70.16	0	288326..289414	+	362	83716405	-	BTH_II0237	-	hypothetical protein
238	 70.13	0	289407..290387	+	326	83718382	-	BTH_II0238	-	pyruvate dehydrogenase E1 beta subunit
239	 73.01	+1	290392..291495	+	367	83717179	-	BTH_II0239	-	branched-chain alpha-keto acid dehydrogenase subunit E2
240	 74.01	+1	291420..292127	-	235	83717582	-	BTH_II0240	-	L-lactate dehydrogenase
241	 68.13	0	292278..293852	-	524	83716340	-	BTH_II0241	-	major facilitator family transporter
242	 66.57	0	294046..295089	-	347	83716683	-	BTH_II0242	-	isochorismatase
243	 65.35	0	295181..296089	+	302	83716184	-	BTH_II0243	-	LysR family transcriptional regulator
244	 69.60	0	296377..297330	-	317	83718032	-	BTH_II0244	-	LysR family transcriptional regulator
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.