IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1838	 66.87	0	2235075..2235572	-	165	83716819	-	BTH_II1846	-	thioesterase, putative
1839	 68.07	0	2235575..2236570	-	331	83716574	-	BTH_II1847	-	3-hydroxybutyryl-CoA dehydrogenase
1840	 69.35	0	2236657..2237586	-	309	83717603	-	BTH_II1848	-	hypothetical protein
1841	 63.62	0	2237674..2238624	-	316	83717388	-	BTH_II1849	-	ABC transporter, periplasmic glycine/betaine-binding protein
1842	 66.88	0	2238892..2239836	+	314	83716859	-	BTH_II1850	-	AraC family transcriptional regulator
1843	 67.31	0	2240310..2242013	+	567	83716257	-	BTH_II1851	-	metallopeptidase domain-containing protein
1844	 65.53	0	2242132..2243358	+	408	83717945	-	BTH_II1852	-	leucine aminopeptidase, putative
1845	 62.10	-1	2243417..2244862	-	481	83717688	-	BTH_II1853	-	outer membrane porin OpcP
1846	 67.37	0	2244787..2245926	-	379	83717137	-	BTH_II1854	-	glycine betaine/L-proline ABC transporter, periplasmic glycine betaine/L-proline-binding protein
1847	 68.08	0	2245821..2247374	-	517	83716187	-	BTH_II1855	-	choline sulfatase
1848	 73.44	+1	2247510..2248409	+	299	83718066	-	BTH_II1856	-	LysR family transcriptional regulator
1849	 65.07	0	2248553..2249428	+	291	83718067	purU-2	BTH_II1857	-	formyltetrahydrofolate deformylase
1850	 64.79	0	2249515..2251170	-	551	83717369	-	BTH_II1858	-	amino acid transporter, putative
1851	 65.05	0	2251350..2252213	-	287	83716434	-	BTH_II1859	-	ABC transporter, periplasmic glycine/betaine-binding protein
1852	 66.49	0	2252323..2253462	-	379	83718170	-	BTH_II1860	-	iron-sulfur cluster-binding protein
1853	 63.20	0	2253483..2254724	-	413	83717184	-	BTH_II1861	-	Rieske family iron-sulfur cluster-binding protein
1854	 71.25	0	2254776..2255561	-	261	83716092	-	BTH_II1862	-	hypothetical protein
1855	 71.49	0	2255558..2256739	-	393	83718354	-	BTH_II1863	-	electron transfer flavoprotein, subunit alpha, putative
1856	 69.52	0	2256744..2258669	-	641	83717662	-	BTH_II1864	-	iron-sulfur cluster binding protein
1857	 67.01	0	2258672..2260735	-	687	83716998	-	BTH_II1865	-	oxidoreductase, FAD/FMN-binding
1858	 67.23	0	2260796..2261329	-	177	83716333	-	BTH_II1866	-	V4R domain-containing protein
1859	 62.86	-1	2261477..2262448	-	323	83718346	-	BTH_II1867	-	renal dipeptidase family protein
1860	 68.24	0	2262520..2263794	-	424	83717733	glyA	BTH_II1868	-	serine hydroxymethyltransferase
1861	 67.64	0	2264203..2265228	+	341	83716071	-	BTH_II1869	-	AraC family transcriptional regulator
1862	 67.64	0	2265414..2266847	-	477	83718047	-	BTH_II1870	-	glutathione-independent formaldehyde dehydrogenase
1863	 70.33	0	2266959..2267969	-	336	83717407	-	BTH_II1871	-	raffinose repressor, putative
1864	 67.25	0	2268204..2269733	+	509	83718265	-	BTH_II1872	-	levansucrase
1865	 67.32	0	2269852..2271525	+	557	83716475	-	BTH_II1873	-	levanase
1866	 62.75	-1	2271581..2271784	+	67	83716038	-	BTH_II1874	-	hypothetical protein
1867	 73.69	+1	2271977..2273443	-	488	83716678	-	BTH_II1875	-	multidrug resistance protein
1868	 74.49	+1	2273440..2275101	-	553	83717519	-	BTH_II1876	-	RND efflux system outer membrane lipoprotein
1869	 71.53	0	2275055..2276020	-	321	83718008	-	BTH_II1877	-	rhamnosyltransferase family protein
1870	 62.28	-1	2276017..2276130	-	37	83716421	-	BTH_II1878	-	hypothetical protein
1871	 70.17	0	2276153..2277724	-	523	83716944	-	BTH_II1879	-	EmrB/QacA family drug resistance transporter
1872	 74.65	+1	2277721..2279148	-	475	83716540	-	BTH_II1880	-	rhamnosyltransferase I, subunit B
1873	 67.67	0	2279278..2280177	-	299	83716935	-	BTH_II1881	-	rhamnosyltransferase 1, subunit A
1874	 56.45	-2	2280750..2281121	-	123	83717991	-	BTH_II1882	-	hypothetical protein
1875	 68.31	0	2281342..2281767	-	141	83718045	-	BTH_II1883	-	hypothetical protein
1876	 59.72	-1	2281790..2282149	-	119	83717690	-	BTH_II1884	-	hypothetical protein
1877	 69.53	0	2282208..2285702	-	1164	83716717	-	BTH_II1885	-	ImcF-like family protein
1878	 70.08	0	2285699..2287483	-	594	83717203	-	BTH_II1886	-	hypothetical protein
1879	 69.53	0	2287509..2288870	-	453	83716495	-	BTH_II1887	-	hypothetical protein
1880	 70.21	0	2288867..2289346	-	159	83718208	-	BTH_II1888	-	putative lipoprotein
1881	 62.82	-1	2289466..2289855	-	129	83717888	-	BTH_II1889	-	hypothetical protein
1882	 72.11	+1	2289895..2290611	-	238	83716070	-	BTH_II1890	-	hypothetical protein
1883	 68.72	0	2290614..2291684	-	356	83716702	-	BTH_II1891	-	pentapeptide repeat-containing protein
1884	 68.34	0	2291684..2293834	-	716	83717521	-	BTH_II1892	-	hypothetical protein
1885	 64.74	0	2293904..2296192	-	762	83716389	-	BTH_II1893	-	Rhs element Vgr protein
1886	 64.66	0	2296361..2298652	-	763	83717067	-	BTH_II1894	-	Rhs element Vgr protein
1887	 70.64	0	2298643..2301486	-	947	83717751	-	BTH_II1895	-	ATP-dependent Clp protease, ATP-binding subunit ClpB
1888	 68.38	0	2301489..2302478	-	329	83718279	-	BTH_II1896	-	hypothetical protein
1889	 70.10	0	2302475..2304337	-	620	83716407	-	BTH_II1897	-	hypothetical protein
1890	 62.04	-1	2304351..2304782	-	143	83717049	-	BTH_II1898	-	hypothetical protein
1891	 61.55	-1	2304861..2305388	-	175	83718015	-	BTH_II1899	-	hypothetical protein
1892	 62.88	-1	2305532..2307037	-	501	83718249	-	BTH_II1900	-	hypothetical protein
1893	 62.14	-1	2307040..2307591	-	183	83717753	-	BTH_II1901	-	hypothetical protein
1894	 62.65	-1	2307625..2308569	-	314	83717202	-	BTH_II1902	-	ImpA-like N-terminal family protein
1895	 65.47	0	2310190..2312109	-	639	83716517	-	BTH_II1903	-	coenzyme A transferase
1896	 70.11	0	2312067..2312762	+	231	83717914	-	BTH_II1904	-	CDP-alcohol phosphatidyltransferase family protein
1897	 66.28	0	2312759..2313532	+	257	83717482	-	BTH_II1905	-	2OG-Fe(II) oxygenase family oxidoreductase
1898	 74.67	+1	2313544..2314530	+	328	83716792	-	BTH_II1906	-	hypothetical protein
1899	 68.62	0	2314569..2315336	+	255	83716352	-	BTH_II1907	-	hypothetical protein
1900	 67.79	0	2315333..2317021	+	562	83716879	-	BTH_II1908	-	phosphoenolpyruvate phosphomutase
1901	 73.43	+1	2317018..2318199	+	393	83717922	-	BTH_II1909	-	3-phosphonopyruvate decarboxylase
1902	 70.22	0	2318214..2319281	+	355	83717353	-	BTH_II1910	-	2-aminoethylphosphonate-pyruvate transaminase
1903	 72.93	+1	2319411..2320001	-	196	83717212	-	BTH_II1911	-	DJ-1/PfpI family protein
1904	 69.91	0	2319931..2320578	+	215	83718243	-	BTH_II1912	-	AraC family transcriptional regulator
1905	 68.16	0	2320826..2321899	+	357	83717625	-	BTH_II1913	-	hypothetical protein
1906	 67.62	0	2322254..2322985	+	243	83716536	-	BTH_II1914	-	alpha/beta fold family hydrolase
1907	 66.99	0	2323172..2324407	-	411	83718120	-	BTH_II1915	-	Bcr/CflA subfamily drug resistance transporter
1908	 71.19	0	2324513..2326015	+	500	83718048	-	BTH_II1916	-	GntR family transcriptional regulator
1909	 72.74	+1	2326149..2327186	-	345	83717161	-	BTH_II1917	-	transglutaminase domain-containing protein
1910	 71.58	0	2327177..2329783	-	868	83717695	-	BTH_II1918	-	u1937b; B1937_F1_4
1911	 69.58	0	2330075..2333512	-	1145	83716604	-	BTH_II1919	-	transglutaminase domain-containing protein
1912	 69.91	0	2333637..2334593	-	318	83716850	-	BTH_II1920	-	transglutaminase-like domain-containing protein
1913	 63.48	0	2334602..2335543	-	313	83717377	-	BTH_II1921	-	hypothetical protein
1914	 65.89	0	2335638..2337053	-	471	83716427	-	BTH_II1922	-	u1937b; B1937_F1_4
1915	 71.31	0	2337783..2338406	+	207	83716954	-	BTH_II1923	-	nitroreductase family protein
1916	 71.40	0	2338471..2338956	+	161	83716125	-	BTH_II1924	-	hypothetical protein
1917	 67.70	0	2339057..2340406	+	449	83716748	-	BTH_II1925	-	chitin binding domain-containing protein
1918	 62.77	-1	2340662..2341225	+	187	83717689	-	BTH_II1926	-	alkyl hydroperoxide reductase, subunit c
1919	 68.99	0	2341168..2342973	+	601	83718356	ahpF	BTH_II1927	-	alkyl hydroperoxide reductase subunit
1920	 65.86	0	2343254..2343625	-	123	83718110	-	BTH_II1928	-	transmembrane protein
1921	 69.99	0	2343975..2346110	-	711	83716758	-	BTH_II1929	-	hypothetical protein
1922	 70.27	0	2346124..2350095	-	1323	83717455	-	BTH_II1930	-	AMP-binding domain-containing protein
1923	 69.68	0	2350152..2351048	-	298	83717835	-	BTH_II1931	-	metallo-beta-lactamase domain-containing protein
1924	 70.57	0	2351063..2352061	-	332	83716602	fabH	BTH_II1932	-	3-oxoacyl-(acyl carrier protein) synthase III
1925	 69.65	0	2352051..2353157	-	368	83717776	-	BTH_II1933	-	hypothetical protein
1926	 72.34	+1	2353157..2354038	-	293	83716903	-	BTH_II1934	-	hypothetical protein
1927	 69.74	0	2354118..2355743	-	541	83716442	-	BTH_II1935	-	acetyl-CoA synthetase, putative
1928	 67.88	0	2356823..2359468	-	881	83717926	-	BTH_II1936	-	ribonucleotide reductase system
1929	 64.16	0	2359857..2360414	+	185	83717249	-	BTH_II1937	-	hypothetical protein
1930	 67.09	0	2360812..2362452	-	546	83716843	groEL	BTH_II1938	-	chaperonin GroEL
1931	 64.60	0	2362465..2362755	-	96	83716291	groES	BTH_II1939	-	co-chaperonin GroES
1932	 64.73	0	2362917..2363330	-	137	83717828	-	BTH_II1940	-	hypothetical protein
1933	 66.98	0	2363388..2364350	-	320	83717304	-	BTH_II1941	-	agmatinase
1934	 68.08	0	2364482..2365972	-	496	83717700	-	BTH_II1942	-	aldehyde dehydrogenase family protein
1935	 62.63	-1	2366090..2366659	-	189	83717911	-	BTH_II1943	-	Cro/CI family transcriptional regulator putative
1936	 62.21	-1	2366923..2367348	-	141	83718288	-	BTH_II1944	-	hypothetical protein
1937	 69.00	0	2367439..2368380	+	313	83717081	-	BTH_II1945	-	glutamine amidotransferase, class I
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.