IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1789	 66.78	0	2170072..2170986	+	304	83716898	-	BTH_II1797	-	acyl-CoA synthetase
1790	 69.29	0	2171101..2172243	-	380	83717427	-	BTH_II1798	-	enoyl-CoA hydratase/isomerase family protein
1791	 73.33	+1	2172240..2173034	-	264	83717948	-	BTH_II1799	-	enoyl-CoA hydratase
1792	 70.46	0	2173034..2173930	-	298	83716113	mmsB	BTH_II1800	-	3-hydroxyisobutyrate dehydrogenase
1793	 67.65	0	2173943..2175472	-	509	83717743	mmsA-3	BTH_II1801	-	methylmalonate-semialdehyde dehydrogenase
1794	 69.01	0	2175551..2177254	-	567	83716563	-	BTH_II1802	-	AMP-binding enzyme
1795	 67.99	0	2177560..2178693	-	377	83718149	-	BTH_II1803	-	acyl-CoA dehydrogenase
1796	 69.68	0	2178793..2179920	+	375	83717593	-	BTH_II1804	-	AraC family transcription regulator
1797	 75.27	+1	2179827..2181500	+	557	83716454	-	BTH_II1805	-	nodulation competitiveness protein nfeD
1798	 66.15	0	2181497..2182267	+	256	83716937	-	BTH_II1806	-	SPFH domain-containing protein/band 7 family protein
1799	 67.91	0	2182753..2183640	+	295	83718321	-	BTH_II1807	-	hypothetical protein
1800	 71.92	0	2183691..2185481	+	596	161723118	-	BTH_II1808	-	short chain dehydrogenase
1801	 65.02	0	2185518..2186426	+	302	83716669	-	BTH_II1809	-	FF domain-containing protein
1802	 69.77	0	2186859..2187245	+	128	83716164	-	BTH_II1810	-	hypothetical protein
1803	 70.49	0	2187434..2187616	-	60	83716404	-	BTH_II1811	-	hypothetical protein
1804	 68.07	0	2187834..2188118	-	94	83717508	-	BTH_II1812	-	hypothetical protein
1805	 67.47	0	2189001..2189621	-	206	83716575	-	BTH_II1813	-	hypothetical protein
1806	 65.82	0	2189863..2191164	+	433	83717083	-	BTH_II1814	-	permease
1807	 68.18	0	2191387..2191518	-	43	83717920	-	BTH_II1815	-	hypothetical protein
1808	 64.58	0	2191571..2191858	-	95	83716064	-	BTH_II1816	-	hypothetical protein
1809	 68.37	0	2192003..2192296	-	97	83716321	-	BTH_II1817	-	putative integral membrane protein
1810	 64.62	0	2192448..2192642	-	64	83716849	-	BTH_II1818	-	hypothetical protein
1811	 72.14	+1	2192912..2194867	+	651	83717601	-	BTH_II1819	-	sigma-54 activated regulatory protein
1812	 69.07	0	2195352..2195642	+	96	83718116	-	BTH_II1820	-	2Fe-2S iron-sulfur
1813	 72.13	+1	2195707..2197080	-	457	83717303	-	BTH_II1821	-	transporter
1814	 75.64	+1	2196971..2198485	-	504	83718094	-	BTH_II1822	-	PepSY-associated TM helix family protein
1815	 68.45	0	2198750..2200993	-	747	83716062	fptA	BTH_II1823	-	Fe(III)-pyochelin receptor precursor
1816	 74.73	+1	2201070..2202842	-	590	83717042	pchI	BTH_II1824	-	ABC transporter ATP-binding protein
1817	 74.18	+1	2202839..2204569	-	576	83716837	-	BTH_II1825	-	ABC transporter, ATP-binding/permease protein, putative
1818	 73.77	+1	2204566..2205621	-	351	83718122	pchG	BTH_II1826	-	pyochelin biosynthetic protein
1819	 72.93	+1	2205618..2211302	-	1894	83717875	-	BTH_II1827	-	pyochelin synthetase
1820	 73.66	+1	2211299..2215690	-	1463	83716174	pchE	BTH_II1828	-	pyochelin synthetase
1821	 68.62	0	2215817..2216788	-	323	83717721	pchR	BTH_II1829	-	AraC family transcription regulator
1822	 70.94	0	2216990..2218906	+	638	83718369	pchD	BTH_II1830	-	salicyl-AMP ligase
1823	 70.67	0	2218903..2219676	+	257	83716356	pchC	BTH_II1831	-	pyochelin biosynthetic protein
1824	 68.30	0	2219673..2219978	+	101	83717053	pchB	BTH_II1832	-	isochorismate-pyruvate lyase
1825	 73.44	+1	2219975..2221420	+	481	83716790	-	BTH_II1833	-	salicylate biosynthesis isochorismate synthase
1826	 69.32	0	2221648..2222892	-	414	83716755	-	BTH_II1834	-	LasA protease precursor
1827	 66.95	0	2223622..2224323	-	233	83716093	-	BTH_II1835	-	ABC transporter
1828	 66.15	0	2224323..2225096	-	257	83716525	livG	BTH_II1836	-	leucine/isoleucine/valine transporter ATP-binding subunit
1829	 66.90	0	2225093..2226364	-	423	83717622	livM	BTH_II1837	-	leucine/isoleucine/valine transporter permease subunit
1830	 65.16	0	2226373..2227299	-	308	83716942	braD	BTH_II1838	-	high-affinity branched-chain amino acid transport system permease protein
1831	 63.98	0	2227490..2228605	-	371	83716290	braC	BTH_II1839	-	leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor
1832	 73.09	+1	2229379..2230686	+	435	83717993	-	BTH_II1840	-	D-amino acid dehydrogenase, small subunit, putative
1833	 68.38	0	2231402..2231692	+	96	83716812	-	BTH_II1841	-	hypothetical protein
1834	 69.10	0	2231950..2232936	+	328	83717884	-	BTH_II1842	-	short chain dehydrogenase/reductase family oxidoreductase
1835	 67.63	0	2233168..2233479	+	103	83717110	-	BTH_II1843	-	hypothetical protein
1836	 71.17	0	2233479..2233589	+	36	83716633	-	BTH_II1844	-	hypothetical protein
1837	 73.56	+1	2234082..2235038	-	318	83717075	-	BTH_II1845	-	lipase, putative
1838	 66.87	0	2235075..2235572	-	165	83716819	-	BTH_II1846	-	thioesterase, putative
1839	 68.07	0	2235575..2236570	-	331	83716574	-	BTH_II1847	-	3-hydroxybutyryl-CoA dehydrogenase
1840	 69.35	0	2236657..2237586	-	309	83717603	-	BTH_II1848	-	hypothetical protein
1841	 63.62	0	2237674..2238624	-	316	83717388	-	BTH_II1849	-	ABC transporter, periplasmic glycine/betaine-binding protein
1842	 66.88	0	2238892..2239836	+	314	83716859	-	BTH_II1850	-	AraC family transcriptional regulator
1843	 67.31	0	2240310..2242013	+	567	83716257	-	BTH_II1851	-	metallopeptidase domain-containing protein
1844	 65.53	0	2242132..2243358	+	408	83717945	-	BTH_II1852	-	leucine aminopeptidase, putative
1845	 62.10	-1	2243417..2244862	-	481	83717688	-	BTH_II1853	-	outer membrane porin OpcP
1846	 67.37	0	2244787..2245926	-	379	83717137	-	BTH_II1854	-	glycine betaine/L-proline ABC transporter, periplasmic glycine betaine/L-proline-binding protein
1847	 68.08	0	2245821..2247374	-	517	83716187	-	BTH_II1855	-	choline sulfatase
1848	 73.44	+1	2247510..2248409	+	299	83718066	-	BTH_II1856	-	LysR family transcriptional regulator
1849	 65.07	0	2248553..2249428	+	291	83718067	purU-2	BTH_II1857	-	formyltetrahydrofolate deformylase
1850	 64.79	0	2249515..2251170	-	551	83717369	-	BTH_II1858	-	amino acid transporter, putative
1851	 65.05	0	2251350..2252213	-	287	83716434	-	BTH_II1859	-	ABC transporter, periplasmic glycine/betaine-binding protein
1852	 66.49	0	2252323..2253462	-	379	83718170	-	BTH_II1860	-	iron-sulfur cluster-binding protein
1853	 63.20	0	2253483..2254724	-	413	83717184	-	BTH_II1861	-	Rieske family iron-sulfur cluster-binding protein
1854	 71.25	0	2254776..2255561	-	261	83716092	-	BTH_II1862	-	hypothetical protein
1855	 71.49	0	2255558..2256739	-	393	83718354	-	BTH_II1863	-	electron transfer flavoprotein, subunit alpha, putative
1856	 69.52	0	2256744..2258669	-	641	83717662	-	BTH_II1864	-	iron-sulfur cluster binding protein
1857	 67.01	0	2258672..2260735	-	687	83716998	-	BTH_II1865	-	oxidoreductase, FAD/FMN-binding
1858	 67.23	0	2260796..2261329	-	177	83716333	-	BTH_II1866	-	V4R domain-containing protein
1859	 62.86	-1	2261477..2262448	-	323	83718346	-	BTH_II1867	-	renal dipeptidase family protein
1860	 68.24	0	2262520..2263794	-	424	83717733	glyA	BTH_II1868	-	serine hydroxymethyltransferase
1861	 67.64	0	2264203..2265228	+	341	83716071	-	BTH_II1869	-	AraC family transcriptional regulator
1862	 67.64	0	2265414..2266847	-	477	83718047	-	BTH_II1870	-	glutathione-independent formaldehyde dehydrogenase
1863	 70.33	0	2266959..2267969	-	336	83717407	-	BTH_II1871	-	raffinose repressor, putative
1864	 67.25	0	2268204..2269733	+	509	83718265	-	BTH_II1872	-	levansucrase
1865	 67.32	0	2269852..2271525	+	557	83716475	-	BTH_II1873	-	levanase
1866	 62.75	-1	2271581..2271784	+	67	83716038	-	BTH_II1874	-	hypothetical protein
1867	 73.69	+1	2271977..2273443	-	488	83716678	-	BTH_II1875	-	multidrug resistance protein
1868	 74.49	+1	2273440..2275101	-	553	83717519	-	BTH_II1876	-	RND efflux system outer membrane lipoprotein
1869	 71.53	0	2275055..2276020	-	321	83718008	-	BTH_II1877	-	rhamnosyltransferase family protein
1870	 62.28	-1	2276017..2276130	-	37	83716421	-	BTH_II1878	-	hypothetical protein
1871	 70.17	0	2276153..2277724	-	523	83716944	-	BTH_II1879	-	EmrB/QacA family drug resistance transporter
1872	 74.65	+1	2277721..2279148	-	475	83716540	-	BTH_II1880	-	rhamnosyltransferase I, subunit B
1873	 67.67	0	2279278..2280177	-	299	83716935	-	BTH_II1881	-	rhamnosyltransferase 1, subunit A
1874	 56.45	-2	2280750..2281121	-	123	83717991	-	BTH_II1882	-	hypothetical protein
1875	 68.31	0	2281342..2281767	-	141	83718045	-	BTH_II1883	-	hypothetical protein
1876	 59.72	-1	2281790..2282149	-	119	83717690	-	BTH_II1884	-	hypothetical protein
1877	 69.53	0	2282208..2285702	-	1164	83716717	-	BTH_II1885	-	ImcF-like family protein
1878	 70.08	0	2285699..2287483	-	594	83717203	-	BTH_II1886	-	hypothetical protein
1879	 69.53	0	2287509..2288870	-	453	83716495	-	BTH_II1887	-	hypothetical protein
1880	 70.21	0	2288867..2289346	-	159	83718208	-	BTH_II1888	-	putative lipoprotein
1881	 62.82	-1	2289466..2289855	-	129	83717888	-	BTH_II1889	-	hypothetical protein
1882	 72.11	+1	2289895..2290611	-	238	83716070	-	BTH_II1890	-	hypothetical protein
1883	 68.72	0	2290614..2291684	-	356	83716702	-	BTH_II1891	-	pentapeptide repeat-containing protein
1884	 68.34	0	2291684..2293834	-	716	83717521	-	BTH_II1892	-	hypothetical protein
1885	 64.74	0	2293904..2296192	-	762	83716389	-	BTH_II1893	-	Rhs element Vgr protein
1886	 64.66	0	2296361..2298652	-	763	83717067	-	BTH_II1894	-	Rhs element Vgr protein
1887	 70.64	0	2298643..2301486	-	947	83717751	-	BTH_II1895	-	ATP-dependent Clp protease, ATP-binding subunit ClpB
1888	 68.38	0	2301489..2302478	-	329	83718279	-	BTH_II1896	-	hypothetical protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.